Bmd85 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bmd85 (Bone mineral density QTL 85) Rattus norvegicus

Symbol: Bmd85
Name: Bone mineral density QTL 85
RGD ID: 5684996
Trait: tibia mineral mass   (VT:1000283)    
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: 4.7
P Value: 0.024
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2259,324,377 - 103,795,077RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0260,325,352 - 106,432,915RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0284,360,871 - 126,162,742RGDRnor5.0
RGSC_v3.4259,700,886 - 106,523,545RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: GK/KyoSwe F344/DuCrlSwe 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/DuCrlSwe  (IEA)
GK/KyoSwe  (IEA)

References

References - curated
1. Lagerholm S, etal., PLoS One. 2011;6(7):e22462. Epub 2011 Jul 27.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
61814Pex2peroxisomal biogenesis factor 229605038096072928Rat
2322Cdh6cadherin 626207913962225228Rat
619958Pdzd2PDZ domain containing 226138461461770516Rat
2240Car2carbonic anhydrase 228674162586756766Rat
2241Ca3carbonic anhydrase 328677041886780011Rat
69254Impa1inositol monophosphatase 129146278191484057Rat
69309Fabp4fatty acid binding protein 429158085891585578Rat
70997Fabp5fatty acid binding protein 529176505691768716Rat
619741Cdh10cadherin 1026862862368850995Rat
3196Npr3natriuretic peptide receptor 326086548360933432Rat
3407Prlrprolactin receptor25913414759324719Rat
2391Cpb1carboxypeptidase B12102755241102785628Rat
68391Pde7aphosphodiesterase 7A2101714767101806853Rat
628788Zfp455zinc finger protein 45528471243184733542Rat
621021PkiacAMP-dependent protein kinase inhibitor alpha29439886994473638Rat
621226Golph3golgi phosphoprotein 326134803061376051Rat
628722Lrrcc1leucine rich repeat and coiled-coil centrosomal protein 128702567187060313Rat
2390Cpa3carboxypeptidase A32102712483102744219Rat
2904Il7interleukin 729423521994280075Rat
621357E2f5E2F transcription factor 528699733187012901Rat
2387Cpceruloplasmin2102439433102498075Rat
621403Hey1hes-related family bHLH transcription factor with YRPW motif 129309670693100316Rat
621582Sub1SUB1 regulator of transcription26100564661020486Rat
621729Dnajc21DnaJ heat shock protein family (Hsp40) member C2125941950559446743Rat
620505Crhcorticotropin releasing hormone2102143055102144919Rat
621767Agxt2alanine-glyoxylate aminotransferase 225933625259377664Rat
2483Cyp7b1cytochrome P450 family 7 subfamily B member 12100502791100669713Rat
68947Stmn2stathmin 229320469093252011Rat
620295Snx16sorting nexin 1629133589691357622Rat
620734Ctnnd2catenin delta 228116897682016495Rat
1304936Mtfr1mitochondrial fission regulator 12101678331101713547Rat
3048Amacralpha-methylacyl-CoA racemase25994615859958255Rat
735161Cct5chaperonin containing TCP1 subunit 528259175082602903Rat
620733Tas2r119taste receptor, type 2, member 11928323759583238602Rat
620285Fabp9fatty acid binding protein 929159184291595873Rat
621785Gyg1glycogenin 12102611888102653916Rat
620394Pag1phosphoprotein membrane anchor with glycosphingolipid microdomains 129193537892076937Rat
1305010C1qtnf3C1q and TNF related 325991709959939519Rat
1305844RalylRALY RNA binding protein-like28748274788274329Rat
708377Zbtb10zinc finger and BTB domain containing 1029247525492509857Rat
1305813Fbxl7F-box and leucine-rich repeat protein 727713977577509223Rat
1306036Slc10a5solute carrier family 10, member 529145754091458844Rat
620641Dapdeath-associated protein28219920682251771Rat
621491Basp1brain abundant, membrane attached signal protein 127581613075863801Rat
1307323Adamts12ADAM metallopeptidase with thrombospondin type 1 motif, 1226003287360327629Rat
1308508Brix1biogenesis of ribosomes BRX125945060859461486Rat
1306690Slc45a2solute carrier family 45, member 225996359959996408Rat
1307193Myo10myosin X27610096276304164Rat
1309519Zfand1zinc finger AN1-type containing 129144443191457518Rat
1306767Tpd52tumor protein D5229273524692816079Rat
1309745Sirpb2signal-regulatory protein beta 228524867985278871Rat
1309146Zfp622zinc finger protein 62227647960576494405Rat
1309780Car1carbonic anhydrase 128682943686872209Rat
1311550Rxfp3relaxin family peptide receptor 326000325660004686Rat
1308360Triotrio Rho guanine nucleotide exchange factor27850506978801384Rat
1307626Droshadrosha ribonuclease III26186488661976688Rat
1311890Zfrzinc finger RNA binding protein26113761161200322Rat
1311970Zc2hc1azinc finger, C2HC-type containing 1A29428735294324655Rat
1309031Hltfhelicase-like transcription factor2102549724102609492Rat
1560393Armc1armadillo repeat containing 12101608173101652180Rat
1308650Sema5asemaphorin 5A28330984383741084Rat
1305234Ythdf3YTH N(6)-methyladenosine RNA binding protein 329835030498384608Rat
1305451Bhlhe22basic helix-loop-helix family, member e222100486400100489510Rat
1305942Rai14retinoic acid induced 1425954628459682687Rat
1309208Slc7a12solute carrier family 7 (cationic amino acid transporter, y+ system), member 1228707972487146875Rat
1306952Cmblcarboxymethylenebutenolidase homolog28256925782591007Rat
1310102Hnf4ghepatocyte nuclear factor 4, gamma29788577398036954Rat
1306496Rad1RAD1 checkpoint DNA exonuclease25946159759469707Rat
1306502RGD1306502similar to hypothetical protein FLJ1119326184871661864762Rat
1305430Cdh18cadherin 1827281807673820144Rat
1306943Trim55tripartite motif-containing 552102100229102142173Rat
1308343Cdh9cadherin 926628042266367121Rat
1310548Hps3HPS3, biogenesis of lysosomal organelles complex 2 subunit 12102484574102527580Rat
1307902Mtmr12myotubularin related protein 1226122371461293266Rat
1562486Dnajc5bDnaJ heat shock protein family (Hsp40) member C5 beta2101973726102066275Rat
1564928Ttc23ltetratricopeptide repeat domain 23-like25947666659538313Rat
1562936RGD1562936similar to Heat shock protein HSP 90-beta (HSP 84)27212525172129162Rat
2071Agtr1bangiotensin II receptor, type 1b2102844969102920232Rat
1563710LOC499565LRRGT0003828660052886613537Rat
1565000Fabp12fatty acid binding protein 1229153956891554999Rat
1560453Ca13carbonic anhydrase 1328692840186959525Rat
1565003Retreg1reticulophagy regulator 127633560976474817Rat
1566022LOC499573LRRGT0005629286223492884049Rat
1563869Zfp704zinc finger protein 70429217180492356059Rat
1563766LOC499542LRRGT0017826072684860735185Rat
1564227Ankrd33bankyrin repeat domain 33B28227760482359420Rat
1565757Marchf6membrane associated ring-CH-type finger 628245568682532917Rat
1559684Zfp458zinc finger protein 45828466115084705631Rat
1334307Olr389-psolfactory receptor pseudogene 38929068544990686491Rat
1563205OtulinlOTU deubiquitinase with linear linkage specificity like27840599478433860Rat
1564125RGD1564125similar to Cln5 protein26589349565902741Rat
1560629AtpsckmtATP synthase c subunit lysine N-methyltransferase28260308682618325Rat
1564247RGD1564247similar to SUMO/sentrin specific protease 529550132695504553Rat
1563022Zfhx4zinc finger homeobox 429622476396408245Rat
619925AnkhANKH inorganic pyrophosphate transport regulator27815302778280181Rat
1560001LOC499544LRRGT0015426097731561004442Rat
1359558tGap1GTPase activating protein testicular GAP129036277290436415Rat
1560828Dnah5dynein, axonemal, heavy chain 527893778879255551Rat
1561906RGD1561906similar to RIKEN cDNA 4930430F0827298438872986671Rat
1585807LOC680982hypothetical protein LOC68098226567090865672736Rat
1583285Hspd1-ps25heat shock protein 1, pseudogene 2527460975074613329Rat
1585655LOC683539similar to Nonhistone chromosomal protein HMG-17 (High-mobility group nucleosome binding domain 2)28407570184075971Rat
1565852LOC499541LRRGT0004526066714160673354Rat
1587796LOC685979similar to Transducin-like enhancer protein 4 (Groucho-related protein 4) (Grg-4)28631352786328412Rat
1562890RGD1562890RGD15628902102083834102087515Rat
1584592LOC682357similar to homolog of yeast ribosome biogenesis regulatory protein RRS12102363614102365829Rat
1583489LOC682402hypothetical protein LOC6824022102692061102697515Rat
1566350Cdh12cadherin 1227047467971705369Rat
1565641Rbisribosomal biogenesis factor28698131486997352Rat
1564543Chmp4ccharged multivesicular body protein 4C29139172991428652Rat
1559945Marchf11membrane associated ring-CH-type finger 1127689833076999690Rat
1589753LOC310177similar to RIKEN cDNA 0610040D2027601663676017401Rat
1588790LOC688498similar to Transcription factor Spi-C (Pu.1-related factor) (Prf)28947153489495857Rat
1592966LOC680363hypothetical protein LOC68036326045263060453393Rat
1593760LOC685499similar to MYST histone acetyltransferase 127948501279486383Rat
1591367Ropn1lrhophilin associated tail protein 1-like28244264582453332Rat
1586190LOC294831similar to ubiquitin-conjugating enzyme E2R 226955210069554245Rat
1589989LOC688389similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 1228721153487230685Rat
1587849Rsl1regulator of sex limited protein 128473969484763617Rat
1585218Pmp2peripheral myelin protein 229161133491615252Rat
1588803LOC688485similar to heat shock protein 228939201989413186Rat
1587814Sirpb2l1signal-regulatory protein beta 2-like 128626781686280536Rat
1586670LOC686026similar to eukaryotic translation initiation factor 5A28659869986599761Rat
1359527Tars1threonyl-tRNA synthetase 126036825160387733Rat
1590660LOC680500similar to CCR4-NOT transcription complex, subunit 82102238885102239831Rat
1585005LOC294909similar to Inosine-5-monophosphate dehydrogenase 1 (IMP dehydrogenase 1) (IMPDH-I) (IMPD 1)29641178396597628Rat
1585007LOC294901hypothetical LOC29490129318698793187785Rat
1588876LOC688412similar to Fructose-bisphosphate aldolase A (Muscle-type aldolase) (Aldolase 1)28840179088402960Rat
1583588LOC681102similar to synaptosomal-associated protein 23 isoform SNAP23B26760413067609584Rat
1589269LOC683212similar to keratin complex 1, acidic, gene 1827891040078911742Rat
1593212LOC365742similar to testis expressed gene 229472449594832001Rat
1593213LOC365740hypothetical LOC36574029391671293951253Rat
1593216LOC365729similar to N-terminal acetyltransferase complex ARD1 subunit homolog A28893544288937194Rat
1593219LOC365713similar to 60S ribosomal protein L927660246676603113Rat
1593220LOC365709similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin e126941461569417238Rat
1596656LOC682635similar to CG31855-PA27382393973841395Rat
1597461Mrps28mitochondrial ribosomal protein S2829285555792858805Rat
1596973LOC678711similar to tropomyosin 2 (beta) isoform 229297216292974217Rat
1592059LOC361908similar to 40S ribosomal protein S1028017473480175231Rat
1594163LOC680268hypothetical protein LOC68026826066996860670245Rat
1595140LOC685308similar to Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific transplantation 84 kDa antigen) (TSTA)27763955877641665Rat
1595487LOC680137similar to tropomyosin 3, gamma isoform 129897571098984032Rat
1594376LOC499576similar to phosphoglycerate kinase 12101036642101038488Rat
1591779LOC680421similar to 60S ribosomal protein L132101949431101950909Rat
1595053LOC685395hypothetical protein LOC68539527886883578869411Rat
1598157LOC679913similar to Chromobox protein homolog 3 (Heterochromatin protein 1 homolog gamma) (HP1 gamma) (Modifier 2 protein) (HECH)29574235195742892Rat
2318290LOC100362397ubiquitin-conjugating enzyme E2L 3-like27644003676441113Rat
2319479LOC100361795von Hippel-Lindau binding protein 1-like29098776090988271Rat
2319570LOC100361704eukaryotic translation initiation factor 1A, Y-linked29074415190745318Rat
2321312LOC100360846proteasome subunit beta type 6-like29383391493834630Rat
2322842LOC100363505hypothetical LOC10036350529412396094124766Rat
2320718LOC100361143ribosomal protein L30-like2100718361100718702Rat
2321484LOC100360774signal-regulatory protein alpha-like28570705185849969Rat
2322903LOC100360042ARP3 actin-related protein 3 homolog (yeast)-like28008312880084348Rat
2322273LOC100360380zinc finger protein 457-like28462536084642535Rat
2320742LOC100361118hypothetical LOC10036111828695946986967653Rat
2321536Sirpdsignal-regulatory protein delta28551348485702291Rat
2322932LOC100360013ubiquitin-associated protein 226600754266009900Rat
2320862LOC10036109828S ribosomal protein L42, mitochondrial-like29879353498794355Rat
2322522LOC100360228hypothetical LOC10036022828274957982751757Rat
2323466LOC100359774hypothetical LOC10035977426393638763937165Rat
2323519LOC100359721hypothetical LOC10035972126359223363595295Rat
2323618LOC100359576multifunctional protein ADE2-like29775675197760325Rat
2324500OtulinOTU deubiquitinase with linear linkage specificity27829043778316633Rat
2323921LOC100362858hypothetical LOC10036285828324721183247542Rat
2325576Mir124-2microRNA 124-22100134866100134974Rat
2324713LOC100363177ferritin light chain 1-like26154356361544581Rat
2324725LOC100363165thioredoxin-like 429037952790379911Rat
2324778LOC100363110thioredoxin-like 428893522189339701Rat
6485043LOC100912995zinc finger protein 733-like28453172684536653Rat
6492359LOC100911520killer cell lectin-like receptor 5-like26421267264217862Rat
6494071LOC100911298heterogeneous nuclear ribonucleoprotein M-like27649878076500974Rat
6502425LOC100909688zinc finger protein 43-like28447343684525070Rat
6496250LOC100910852uncharacterized LOC10091085228881243488947739Rat
6502911LOC100909539uncharacterized LOC10090953928330666783309688Rat
6500592LOC100909964tyrosine-protein phosphatase non-receptor type substrate 1-like28501110285049473Rat
6504200LOC100909396uncharacterized LOC10090939626182809661830209Rat
7523639LOC102554929uncharacterized LOC10255492927510102975109556Rat
7525762LOC102549474uncharacterized LOC1025494742103096291103101357Rat
7505957LOC102553625uncharacterized LOC10255362526877889068939928Rat
7530586LOC102551810uncharacterized LOC10255181028080543880830606Rat
7511798LOC102553273N-alpha-acetyltransferase 11-like29037877590379561Rat
7503607LOC10254829539S ribosomal protein L40, mitochondrial-like25946985759471850Rat
7662910LOC102552232uncharacterized LOC10255223226576716665819676Rat
7662935LOC102553734uncharacterized LOC10255373426898029469020038Rat
7621135LOC102546663tyrosine-protein phosphatase non-receptor type substrate 1-like28602086986029938Rat
7655727LOC102554147uncharacterized LOC10255414727215668172198344Rat
7595026LOC102553378uncharacterized LOC10255337828154639981547681Rat
7544216LOC102546353uncharacterized LOC10254635329162840391653943Rat
7561027LOC102553210uncharacterized LOC10255321029114641291174526Rat
7602661LOC102550295uncharacterized LOC10255029529498515695010035Rat
7603843LOC102551226uncharacterized LOC10255122627963411579641114Rat
7564391LOC102548546zinc finger protein 709-like28478246384812216Rat
41054385LOC120101168U6 spliceosomal RNA26108224061082346Rat
41054388LOC120101113U2 spliceosomal RNA29499570194995871Rat
7678070LOC102553736uncharacterized LOC10255373628245355282454675Rat
7740519LOC102551357uncharacterized LOC10255135727988846379939230Rat
7667725LOC102554526heterogeneous nuclear ribonucleoprotein A3-like27324733073249760Rat
7671897LOC102553574uncharacterized LOC10255357428214070782173924Rat
7672274LOC102550696uncharacterized LOC10255069629546978795483680Rat
9148085LOC103691502U1 small nuclear ribonucleoprotein C pseudogene28747630487479597Rat
9153014LOC103693953zinc finger protein 239-like28486716084869455Rat
9165344LOC103694578signal-regulatory protein beta-2-like28519107985237354Rat
9349712LOC103691511uncharacterized LOC10369151129127719591310476Rat
9271705LOC103691515uncharacterized LOC1036915152101871139101906931Rat
9387191LOC103691483uncharacterized LOC10369148325973429159747359Rat
9362373LOC103695100uncharacterized LOC10369510026207365762085399Rat
9304207LOC103691505uncharacterized LOC10369150528897087588980334Rat
9429209LOC103691486uncharacterized LOC10369148627481148974842763Rat
9437192LOC103695108cytochrome c, somatic pseudogene29287947592879918Rat
9444651LOC103690087uncharacterized LOC1036900872102968007103010870Rat
11359058LOC10834996760S ribosomal protein L7a pseudogene27636625476367092Rat
11367342LOC108350232uncharacterized LOC10835023229413026794134883Rat
11467539Trnay-gua2transfer RNA tyrosine (anticodon GUA) 22102088114102088203Rat
11457724LOC108349973zinc finger protein 728-like28466113584684994Rat
11445903LOC108350231uncharacterized LOC10835023127481003074811049Rat
11447466LOC108350175zinc finger protein 737-like28443107084479170Rat
11447753LOC108350179serine/arginine repetitive matrix protein 1 pseudogene29594844595950705Rat
11431841Trnar-acg1transfer RNA arginine (anticodon ACG) 12102087287102087359Rat
11441417LOC108349981uncharacterized LOC10834998129355442093631719Rat
11453461LOC108350230glyceraldehyde-3-phosphate dehydrogenase pseudogene26273716662738204Rat
11418901LOC10834997060S ribosomal protein L27 pseudogene27895282078953229Rat
11423168LOC108350235succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial pseudogene2102277631102278359Rat
11384865LOC108349983uncharacterized LOC10834998329958496799985951Rat
11373688LOC108350177voltage-dependent anion-selective channel protein 1 pseudogene29388395993885694Rat
11374486LOC108350233glyceraldehyde-3-phosphate dehydrogenase pseudogene29416530994166476Rat
11386721LOC108350173charged multivesicular body protein 5 pseudogene27598867576005457Rat
11378090LOC10835022960S ribosomal protein L17 pseudogene25984172659842316Rat
11380439LOC108349976eukaryotic translation initiation factor 1 pseudogene28778725287788140Rat
11403233LOC108349968uncharacterized LOC10834996827632408476333964Rat
11511747LOC108350170glyceraldehyde-3-phosphate dehydrogenase pseudogene26084791860848940Rat
11493630LOC10835017160S ribosomal protein L7a pseudogene26242432862430752Rat
41354863LOC120101000zinc finger protein 728-like28386111783866826Rat
41136923LOC120100756tubulin alpha-1C chain-like27923675079237720Rat
41137062LOC120101105U2 spliceosomal RNA27770271777702836Rat
41276753LOC120100740uncharacterized LOC12010074025960122159605292Rat
41356687LOC120101370small nucleolar RNA SNORD12328330691883306987Rat
41204371LOC120100776uncharacterized LOC12010077629618730696190772Rat
41204457LOC120101303small nucleolar RNA SNORA1728279041782790548Rat
41250438LOC120101317small nucleolar RNA SNORA1728089744680897577Rat
41250842LOC120100745uncharacterized LOC12010074526853932368628612Rat
41324318LOC120100741uncharacterized LOC12010074126001648260032748Rat
41324632LOC120101300small nucleolar RNA SNORA1728217729582177424Rat
41357925LOC12010099860S ribosomal protein L6-like26813098468132284Rat
41141530LOC120100773uncharacterized LOC12010077329306410293085050Rat
41251936NEWGENE_40961720transfer RNA tyrosine (anticodon GUA)2102087698102087791Rat
41384167LOC120100561ubiquitin-conjugating enzyme E2 N-like26977182569772236Rat
41090942LOC120100755uncharacterized LOC12010075527818296378184031Rat
41171310NEWGENE_40934091transfer RNA alanine (anticodon AGC)29024024290240315Rat
41206868LOC120100999glyceraldehyde-3-phosphate dehydrogenase-like27533303175333975Rat
41252796LOC120100565AP-2 complex subunit sigma-like28633722386341061Rat
41287396NEWGENE_40933816transfer RNA valine (anticodon AAC)27284242772842507Rat
41360714LOC120100772uncharacterized protein C14orf119 homolog29293158092935459Rat
41145215LOC120101135U6 spliceosomal RNA28294449282944598Rat
41173629LOC120100749uncharacterized LOC12010074927631401276334295Rat
41208025LOC120101223U7 small nuclear RNA28159992081599980Rat
41209199LOC120100758UPF0183 protein C16orf70 homolog28449504384497655Rat
41093744LOC120100752uncharacterized LOC12010075227726901677284684Rat
41119034LOC120101004phosphoglycerate kinase 1-like29597267495974057Rat
41261285LOC120101395U1 spliceosomal RNA27406126874061423Rat
41095331LOC120101114U2 spliceosomal RNA2103674535103674695Rat
41121272LOC120101252small nucleolar RNA SNORA2/SNORA34 family29490730594907427Rat
41121742LOC120100767uncharacterized LOC12010076729142682191427787Rat
41178063LOC12010056360S ribosomal protein L7a-like27551842375523313Rat
41099516LOC120101304small nucleolar RNA SNORA1729078950990789640Rat
41123498LOC120101245small nucleolar RNA SNORA4427044660770446735Rat
41180045LOC120101302small nucleolar RNA SNORA1727347496673475097Rat
41191856LOC120101085uncharacterized LOC12010108526102048861021424Rat
41215037LOC120101159U6 spliceosomal RNA29160059691600702Rat
41266464LOC120101217U7 small nuclear RNA28934485789344915Rat
41394827LOC120101002uncharacterized LOC12010100228827317088275569Rat
41156512LOC120100754uncharacterized LOC12010075427817275178179652Rat
41216266LOC120101293small nucleolar RNA SNORA1728098539980985530Rat
41369417LOC120100775uncharacterized LOC12010077529504909495142066Rat
41397126LOC120100771uncharacterized LOC12010077129259591192650648Rat
41102832LOC120101346small nucleolar RNA SNORA1727094241070942533Rat
41184907LOC120101260small nucleolar RNA SNORA4825946698059467107Rat
41270292LOC120101001solute carrier family 7 member 13-like28719242887193182Rat
41372438LOC120101326small nucleolar RNA SNORA1729308335293083478Rat
41196546LOC120100753uncharacterized LOC12010075327726176677268562Rat
41196986LOC120101348small nucleolar RNA SNORA1726516063165160712Rat
41400978LOC120100747uncharacterized LOC12010074727214718872156686Rat
41230892LOC120101390U1 spliceosomal RNA27517905275179214Rat
41231648LOC120101221U7 small nuclear RNA29502419395024260Rat
41294127LOC120100743ubiquitin-associated protein 2-like26600528266007542Rat
41403201LOC120101087uncharacterized LOC12010108727050893070511875Rat
41164169LOC120100568uncharacterized LOC12010056829875975998761425Rat
41231663LOC120100995dipeptidyl peptidase 3-like26429759364432049Rat
41232314LOC12010099660S ribosomal protein L13-like26459573764596270Rat
41275022LOC120101339small nucleolar RNA SNORA1729773968397739817Rat
41377065LOC120100569uncharacterized LOC1201005692101100447101112987Rat
41084533LOC12010056660S ribosomal protein L34-like29391420293914762Rat
41201453LOC120101380U1 spliceosomal RNA28214836482148523Rat
41232980LOC120100748uncharacterized LOC12010074827537125875412938Rat
40998260LOC120100766uncharacterized LOC12010076629131875891320523Rat
40948588LOC120100761zinc finger protein 728-like28456268584618998Rat
40949809LOC12010108860S ribosomal protein L34-like28810606688110170Rat
40973702LOC120100769uncharacterized LOC12010076929200585092006345Rat
40928086LOC120101219U7 small nuclear RNA27664811376648175Rat
40998579LOC120100770uncharacterized LOC12010077029219118092206415Rat
40929196LOC120101172U6 spliceosomal RNA29143141591431521Rat
40957973LOC120101264small nucleolar RNA SNORA482101035275101035413Rat
40982245LOC120101008mediator of RNA polymerase II transcription subunit 14-like2103120850103132587Rat
40958534LOC120101006actin-related protein 2/3 complex subunit 1A-like29958158399583561Rat
40960807LOC120100778uncharacterized LOC1201007782100126406100138972Rat
40934801LOC120100627protein dpy-30 homolog25952263859526672Rat
41006616LOC120100760uncharacterized LOC12010076028446722384470335Rat
41007168LOC120101141U6 spliceosomal RNA29486382594863931Rat
41007682LOC120101178U6 spliceosomal RNA29159791491598020Rat
40938094LOC120101358small nucleolar RNA SNORA1729432602094326096Rat
40938153LOC120100765solute carrier family 7 member 13-like28717656287177648Rat
40962450LOC120101086uncharacterized LOC12010108626132407061330556Rat
40962896LOC120101243small nucleolar RNA SNORA2428249077082490892Rat
40939054LOC120093158uncharacterized LOC12009315829150191891512455Rat
40992083LOC120100750uncharacterized LOC12010075027678800976854838Rat
40942995LOC120101256small nucleolar RNA SNORA3829291670592916823Rat
40992991LOC120101332small nucleolar RNA SNORA1729920127799201403Rat
40994990LOC120100997protein crumbs homolog 3-like26800073868003782Rat
40995327LOC120100779ras-related protein Rab-5C-like2101841519101843700Rat
40995943LOC120100742uncharacterized LOC12010074226558793765606771Rat
41024443LOC120101173U6 spliceosomal RNA26280651762806619Rat
41024587LOC120100780uncharacterized LOC1201007802101807523101830044Rat
41025341LOC120100764uncharacterized LOC12010076428639208286412960Rat
41050540LOC120100781uncharacterized LOC1201007812102111026102124407Rat
41316876LOC120100757uncharacterized LOC12010075728223303882239128Rat
41135571LOC120100560uncharacterized LOC12010056026902009469020818Rat
41338792LOC120101249small nucleolar RNA SNORA4429982670099826807Rat
41338841LOC120100763uncharacterized LOC12010076328621287186237979Rat
41056389LOC120101320small nucleolar RNA SNORA1727767562177675749Rat
41151337LOC120100567uncharacterized LOC12010056729454941894574278Rat
41257750LOC12010075960 kDa heat shock protein, mitochondrial-like28451519384518846Rat
41335676LOC120100744serine hydrolase RBBP9-like26867700268677554Rat
41220404LOC120100762uncharacterized LOC12010076228460088084606288Rat
41220494LOC120101003basic salivary proline-rich protein 1-like29309579093096641Rat
41317556LOC120100768uncharacterized LOC12010076829188775991893327Rat
41058740LOC120100774uncharacterized LOC12010077429420871694235985Rat
41315512LOC120100562RNA-binding protein FUS-like27413938274141230Rat
41337724LOC120100746uncharacterized LOC12010074626865085668670949Rat
41035132LOC120101115U2 spliceosomal RNA29541335995413467Rat
41303141LOC12010056440S ribosomal protein S19-like28024233180242836Rat
41016308LOC120101176U6 spliceosomal RNA28090851180908615Rat
41016982LOC120100777eukaryotic translation initiation factor 2 subunit 3-like29967190399686497Rat
41065891LOC120101005heterogeneous nuclear ribonucleoprotein K-like29955215599552870Rat
41066036LOC120101289small nucleolar RNA SNORA1726034044160340572Rat
41235934LOC120100751uncharacterized LOC12010075127724835477260551Rat
41237332LOC120101366U1 spliceosomal RNA27426084874261011Rat
41068304LOC120101139U6 spliceosomal RNA28378219383782299Rat
41307645LOC120101174U6 spliceosomal RNA2102241494102241597Rat
41073287LOC120100782uncharacterized LOC1201007822103099138103118399Rat
41074493LOC120101007pre-mRNA-splicing factor 38A-like2100370140100371030Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10121D2Mco341922102854285102854485Ratregion
10122D2Mco352762102853080102853371Ratregion
10319D2Mco4121227381172573811941Ratregion
10387D2Mgh261312102771168102771306Ratregion
11155D2Wox1418225932445459324636Ratregion
11156D2Mit2431025932437759324691Ratregion
33824D2Mit418826158212361582311Ratregion
34190D2Mgh1915028357507283575226Ratregion
34383D2Mgh51232103794961103795077Ratregion
34487D2Mgh330426251660962516896Ratregion
33620D2Mit618927653932276539510Ratregion
33739D2Mit531826611827566118463Ratregion
36017D2Rat7413026917384469173974Ratregion
37274D2Rat13524928745171787451978Ratregion
37474D2Rat27620928219398082194185Ratregion
36850D2Rat2016025994328659943463Ratregion
36918D2Rat2415629822659898226760Ratregion
37132D2Rat14412527689708576897216Ratregion
37664D2Rat16721527799114877991361Ratregion
37816D2Rat14521729044253590442742Ratregion
36693D2Rat7514227866561678665758Ratregion
34914D2Rat2317428766843287668614Ratregion
34914D2Rat2317428766843287668614Ratregion
35142D2Rat2212726846286068462973Ratregion
35148D2Rat2713029435940794359546Ratregion
35643D2Rat2111327478666474786777Ratregion
35729D2Rat2514929923679099236961Ratregion
35929D2Rat12212929634548996345626Ratregion
39828D2Rat20423527613654776136768Ratregion
40470D2Rat29917026353190063532066Ratregion
40478D2Rat27723728234589382346118Ratregion
40560D2Rat27316327441756774417754Ratregion
40612D2Rat2781302102104314102104430Ratregion
40612D2Rat2781302102104121102104430Ratregion
38592D2Rat11321429154614191546365Ratregion
38610D2Rat1432452103518774103519040Ratregion
38726D2Rat16314629032856090328721Ratregion
40074D2Rat20713727305587573056016Ratregion
39046D2Rat17522325943983459440061Ratregion
39170D2Rat17418225974481759745001Ratregion
39216D2Rat9521428231645282316662Ratregion
39370D2Rat21213828168982681689944Ratregion
39388D2Rat21320029511671195116915Ratregion
39512D2Rat21013828112456881124716Ratregion
42117D2Arb4223026499184564992091Ratregion
42119D2Arb633525932430759324662Ratregion
42287D2Rat37120727387824373878442Ratregion
42288D2Rat33024229175339291753616Ratregion
41188D2Rat20622226864256868642799Ratregion
41464D2Rat2153302103309145103309441Ratregion
42576D2Rat27114526030523460305371Ratregion
42577D2Rat32020726185874561858937Ratregion
42578D2Rat32223927324535973245596Ratregion
42579D2Rat32320727355816973558384Ratregion
42581D2Rat32412328197420681974307Ratregion
42582D2Rat32514328325069983250839Ratregion
42584D2Rat32724928409485284095107Ratregion
42585D2Rat32821028346875083468912Ratregion
42586D2Rat33221529415028194150482Ratregion
42587D2Rat32921929991151999911741Ratregion
40844D2Rat21120128182992381830126Ratregion
41000D2Rat20314927585924275859387Ratregion
41038D2Rat21411929265932992659444Ratregion
41744D2Rat27914929907464499074799Ratregion
41758D2Rat27220027668044076680636Ratregion
41788D2Rat27520828175453081754745Ratregion
41894D2Rat33113129895627398956398Ratregion
44552D9Wox2113627919041979190476Ratregion
44552D9Wox2113627196810571968162Ratregion
43494D2Got3210527548632275486427Ratregion
43500D2Got18314426630034766300491Ratregion
43501D2Got4421327036780870368021Ratregion
43502D2Got3624427750311977503363Ratregion
43503D2Got3812727734517377345300Ratregion
43505D2Got3712927772448077724609Ratregion
43507D2Wox2819027960689479607078Ratregion
43508D2Got4628628320380083204086Ratregion
43510D2Got3322928195690881957137Ratregion
43512D2Got4119728189140881891603Ratregion
43513D2Got4019727508870075088897Ratregion
43517D2Got6815829175339291753550Ratregion
43518D2Got7314529174503291745177Ratregion
43519D2Got6415129302661593026768Ratregion
43521D2Got7018729375581993756006Ratregion
43527D2Got5316729631930696319473Ratregion
43529D2Got5817129468053794680708Ratregion
60320D2Got3413027590413575904265Ratregion
60324D2Got4719126898344468983634Ratregion
60329D2Got521162101078143101078259Ratregion
60329D2Got521162101077038101078259Ratregion
60330D2Got5519529775616897756365Ratregion
60331D2Got5627029810354898103818Ratregion
60332D2Got5717129792988597930056Ratregion
60314D2Got19625129841090298411157Ratregion
67827D2Uwm2910726073165260731732Ratregion
625765D2Got601352100773874100774009Ratregion
66432D9Mco728526844340268443753Ratregion
66482D2Uia1621029978953899789748Ratregion
66651D2Mco1219428076214780762364Ratregion
66657D2Mco164002102202080102202499Ratregion
66659D2Mco1714327499775974997963Ratregion
66661D2Mco1813927866561978665763Ratregion
67749D2Uwm3022626198885061989099Ratregion
67750D2Uwm3119727899766278997855Ratregion
67770D2Uwm613729823746598237600Ratregion
1630515D2Ulb819927892342178923620Ratregion
1630974D2Got31411926111683761116951Ratregion
1631348D2Ulb1627427799718577997459Ratregion
1631772D2Uia1810529368481193684916Ratregion
1578914D2Chm29624427255502672555272Ratregion
1579021D2Chm17225027879433478794584Ratregion
1579111D2Chm29424126771746367717704Ratregion
1579114D2Chm29924227374444373744685Ratregion
1627859D2Got39728626244281862443104Ratregion
1628294D2Got40119426110233161102520Ratregion
1628349D2Wox4822429159359791593821Ratregion
1629043D2Got31617725996910259969279Ratregion
1629907D2Ulb1821329374284993743062Ratregion
1638728D2Got32322729142960791429834Ratregion
1638728D2Got32322729142947191429834Ratregion
1632736D2Got32014726404621364046360Ratregion
1632808D2Ulb714925979644859796597Ratregion
1633230D2Got31922226443107164431288Ratregion
1639967D2Got41621829627894296279160Ratregion
1640758D2Got32416128786440087864550Ratregion
1635087D2Ulb910829187251491872622Ratregion
1635435D2Got31711826358755263587670Ratregion
1635810D2Got40426328483136884831631Ratregion
1636242D2Got38027725996340259963675Ratregion
1636528D2Got33213129712193897121971Ratregion
1636921D2Got32110727548631975486426Ratregion
1637376D2Got31510726027751160277618Ratregion
1638455D2Got42716429434871394348877Ratregion
1638470D2Wox552352102438708102438945Ratregion
1633796D2Got38112027858043978580561Ratregion
1633857D2Got39129629822572398226023Ratregion
1633981D2Cebr211029302526093025370Ratregion
1634150D2Wox541802102437904102438084Ratregion
1634704D2Got32511228728944787289559Ratregion
7206294Spic60228949525389495855Ratregion
7205886px-34a8029561454495614717Ratregion
5035747D5S23179928201556082015659Ratregion
5035771PMC165967P743329564014295640575Ratregion
5035787PMC17879P158326093163460932217Ratregion
5038672BB21001212229940220199402323Ratregion
5038754RH1273131912102608853102609044Ratregion
5038880RH12738621925995793659958155Ratregion
5036370Il716529427864694278811Ratregion
5039234RH12758919028677048386770666Ratregion
5039124RH12752619228225150582251697Ratregion
5036701AU04892010328834051488340617Ratregion
5036761AU04911917026382061163820781Ratregion
5036855AU04942318627813367778133863Ratregion
5037031AU04998217126202042162020592Ratregion
5035526C130041O22Rik39129622746996227860Ratregion
5035542Mrpl40025947112759471615Ratregion
5035608D8S1385E11029320479093204900Ratregion
5035633A001Y0410729838443498384541Ratregion
5033855RH14037116327850521078505373Ratregion
5028713A009S3514828742665987426807Ratregion
5028735STS-AA00978116027649421376494373Ratregion
5028741RH4595015429622758096227734Ratregion
5031524AU04804523429042244190422692Ratregion
5031524AU04804523429042244190422672Ratregion
5029201RH1439011972100134296100134493Ratregion
5031896AU0467879029856139898561488Ratregion
5029241RH14404912127853262778532748Ratregion
5029543BG3754471372101255007101255143Ratregion
5032253AU017667902102612002102612092Ratregion
5032475D15Ertd600e20627630395576304161Ratregion
5035446BQ19355720229554450095544702Ratregion
5034884AI16976113329788598897886121Ratregion
5034966AI01017218528228051982280704Ratregion
5034980Agtr1a702102846542102846612Ratregion
5032807RH13537120628222298982223195Ratregion
5033003RH13725025028674167486741924Ratregion
5030251BE11149516029604975596049915Ratregion
5033095RH13757517127612891976129090Ratregion
5025128RH12660820627829279878293004Ratregion
5027769RH946701642100503471100503635Ratregion
5027811RH948359029427631194276401Ratregion
5033197RH1379411372102486358102486494Ratregion
5025534RH1286962002102611924102612124Ratregion
5025572RH12884116328259080182590964Ratregion
5030869BE12097015028151592181516071Ratregion
5025710RH12936120326119980461200010Ratregion
5025818RH12979721228699743786997649Ratregion
5055073RH14359012727861816778618294Ratregion
5053449RH14265514027829305478293194Ratregion
5052093RH948361052102712656102712761Ratregion
5054285RH14313621126100731961007530Ratregion
5057468AA85874821128827513788275348Ratregion
5054679RH14336310529940181599401920Ratregion
5055501RH14383811527647337576473490Ratregion
5055719RH14396326029840945098409710Ratregion
5057896BE1016801842102519250102519434Ratregion
5058590BE10212818228161148881611670Ratregion
5055923RH14408112028462264684622766Ratregion
5055175RH14364914629148612591486271Ratregion
5056289RH14429214427820429878204442Ratregion
5058734AI54954711128628036286280473Ratregion
5058734AI54954711128570211785702228Ratregion
5058094BE10196218828164847581648661Ratregion
5058198BF38679819828149899381499191Ratregion
5055497RH14383527827877444678774724Ratregion
5052569AI31466811929967240499672523Ratregion
5052897RH14233715529207665392076808Ratregion
5050762RH13424418529151178691511971Ratregion
5053689RH14279411927850624078506359Ratregion
5049834RH13370819527713995477140148Ratregion
5052565AA58950825926793198967932248Ratregion
5052565AA58950825926793198967932248Ratregion
5051296RH1345522012102755277102755478Ratregion
5051346AW06122414729285585592856002Ratregion
5050700RH13420818028447374784473927Ratregion
5053137RH14247529226207567362075965Ratregion
5053357RH1426021382101610125101610263Ratregion
5053403RH14262810027544081275440912Ratregion
5051485AW54596612128733261987332736Ratregion
5051000RH13438020527630980976310014Ratregion
5040948RH12857521128201540282015613Ratregion
5043368RH12998618428687192786872111Ratregion
5041296RH12877520929176510191765310Ratregion
5043540RH13008419129295105792951248Ratregion
5045008RH13093021029428031394280523Ratregion
5045628RH13128719329145406391454256Ratregion
5046154RH13158918825975390459754092Ratregion
5041834RH12908519628424289784243095Ratregion
5046554RH13182021129427888994279100Ratregion
5047450RH13233518927633667776336866Ratregion
5047494RH13236018129304474193044922Ratregion
5048876RH13315721528261747482617689Ratregion
5046626RH13186220428748282487483028Ratregion
5047932RH13261220626129283261293038Ratregion
5048002RH13265220325954642859546631Ratregion
5049412RH13346621525946897459469476Ratregion
5047226RH13220620925945066759450875Ratregion
5039408RH12768919025937769459377884Ratregion
5047338RH13227019828461863684618834Ratregion
5039706RH12786019128424273284242920Ratregion
5039830RH12793120929151212091512329Ratregion
5039928RH12798820426793187467932078Ratregion
5039928RH12798820426793187467932078Ratregion
5042452RH12944220629439905394399259Ratregion
5040210RH12815318127850567278505853Ratregion
5040252RH12817721726100573261005947Ratregion
5039426RH12769921929066991490670133Ratregion
5039534RH12776118728245587382456060Ratregion
5041944RH12914918129439890894399089Ratregion
7191218D2Mit618927653932276539510Ratregion
5042290RH12934921828677044986770661Ratregion
5043398RH13000318227814438578144567Ratregion
5043490RH13005521826088913460889352Ratregion
5042738RH1296162182102611995102612213Ratregion
5040464RH12829819429148362491483818Ratregion
7193028Krt1816727891141678911583Ratregion
5043006RH12977516128259080282590963Ratregion
5043014RH12977918829439896794400249Ratregion
5041466RH12887318629158416991585447Ratregion
5073828RH1376621272102642592102642719Ratregion
5075250RH13848616427851332078513484Ratregion
5074132RH13784015727840744278407599Ratregion
5076716RH13933712028234708282347202Ratregion
5076898RH13944315426566903865669208Ratregion
5077060RH13953618027850521078505390Ratregion
5077360RH13971218125945187859452059Ratregion
5076068RH13896017729428761394287790Ratregion
5075112RH13840518829161294891614449Ratregion
5079442RH14100020727601672176017269Ratregion
5079444RH14100119129247550092475691Ratregion
5076620RH13928122629320330093203526Ratregion
5076410RH1391591202102141308102141428Ratregion
5077418RH13974518229940246299402644Ratregion
5077462RH13977018129428761394287794Ratregion
5077480RH1397802152101716101101716316Ratregion
5078262RH14023718426924979369249977Ratregion
5079840RH1412331882101712146101712334Ratregion
5078516RH1403881862102609025102609211Ratregion
5078078RH14013122027601708576017305Ratregion
5080072RH14136718127424652074246703Ratregion
5080138RH14140620728373511083735317Ratregion
5079258RH14087521629251219092512406Ratregion
5079272RH14088518128464224084642421Ratregion
5079302RH14090319028259166482591854Ratregion
5080300RH1415001822102497797102497979Ratregion
5071086RH13487821526086810960868324Ratregion
5080502RH1416162172100488307100488524Ratregion
5078624RH14045113926271483462714974Ratregion
5071228RH13496121628552648285526698Ratregion
5070814RH13472118727586425875864445Ratregion
5074148RH13784913329677958296779715Ratregion
5070984RH13481919726207501062075207Ratregion
5074228RH13789515129216920492169355Ratregion
5073534RH13749221228201089282011104Ratregion
5073764RH13762522028220168182201901Ratregion
5074856RH13825817727815796778158144Ratregion
5071858RH13532519827948508479485282Ratregion
5061768AW5332909828675547786755575Ratregion
5063374BI30178121329103455191034764Ratregion
5063424BF4042461732101714403101714576Ratregion
5066688AU04820920929448336194483570Ratregion
5067456AU04773229028141490681415196Ratregion
5067508AU04770217327429776074297933Ratregion
5067724AU04757420429364029993640503Ratregion
5068062AU0473701512102560975102561122Ratregion
5068356AU04719616829276243092762600Ratregion
5068358AU04719414227798317077983314Ratregion
5068646AU04701222129838001698380231Ratregion
5068700AU0469879929676505296765151Ratregion
5070311RH12647724527828050178280746Ratregion
5070342AI504870832102755452102755535Ratregion
5069754AU02910912126352924663529367Ratregion
5062018AI45412618829320485193205039Ratregion
5065292BE12139717426113401361134187Ratregion
5062204BE10632215127869822178698372Ratregion
5062274BE10646418426849729068497474Ratregion
5062310BI28866720529216106192161266Ratregion
5065696BF40622711327600831376008426Ratregion
5062648BF40366913627816335478163490Ratregion
5062766AW53437915829247653292476690Ratregion
5064186BE11419015028705016287050312Ratregion
5060258AI11183420329212389392124096Ratregion
5062060BF39734724427730501277305256Ratregion
5063598BE10781515029309990893100058Ratregion
5063758AI0438019229606530596065397Ratregion
5065390BE11531416627854406078544226Ratregion
5062904AW52886115027699947576999625Ratregion
5066176AA92595115629281585592816012Ratregion
5061316BI29372820829234884092349048Ratregion
5061334BF39624013529839176598391900Ratregion
5064752BF40501121028228302582283236Ratregion
5066412AU04837220228421982084220022Ratregion
5066584AU04827117726340346163403638Ratregion
5084206AA89391616728674630286746469Ratregion
5086857AI10459419428261809782618291Ratregion
5087040AI00785517129622821196228382Ratregion
5087440PMC165967P845129560990595610356Ratregion
5082649BE11992917027861174078611910Ratregion
5086586BM38587017829247751492477692Ratregion
5082899BF39036218327827306878273251Ratregion
5087442PMC165967P943929557329195573730Ratregion
5089899AU04942915129248849592488646Ratregion
5088221AU04843918027246975972469939Ratregion
5083403BF39107018229228641492286596Ratregion
5088503AU04860827129830080498301075Ratregion
5083801AI41296618128228261382282794Ratregion
5089633AU04927121627903559579035812Ratregion
5089637AU0492731722100554056100554228Ratregion
5090477AU0497732142103112117103112326Ratregion
5084082AI23323321429606611996066333Ratregion
5090039AU04951428828182557581825865Ratregion
5090181AU04959910427831235478312458Ratregion
5081933BE11878420328747845287478655Ratregion
5085048UniSTS:2563876912102846187102846878Ratregion
5085080AW5331181962101608470101608666Ratregion
5088213AU04843429927904642079046719Ratregion
5080984RH14189618429145564791455831Ratregion
5088719AU0487378429535796495358048Ratregion
5088745AU0487531762102661120102661296Ratregion
5085501BM39048619428473317684733370Ratregion
5089069AU0489361682101346887101347055Ratregion
5089181AU04900316125985060859850769Ratregion
5089261AU04905118125994321459943395Ratregion
5084990AI00888620328700346387003666Ratregion
5081635BE11772118527728315677283341Ratregion
5082003BF40902014427170279471702938Ratregion
5083815AA892399932101713223101713316Ratregion
5502801MYO1013627629371776293853Ratregion
5503910UniSTS:2563856412102846237102846878Ratregion
5503550ZFH4__493877329622737996228152Ratregion
5504298D8S1388E9029320471993204809Ratregion
5504809ha2145027888226678882787Ratregion
5504480PMC22098P152226093092960931451Ratregion
5505128Krt1876327891069078911453Ratregion
5505128Krt1876327891062078911453Ratregion
5505899UniSTS:4960149128359670883596799Ratregion
5506029NM_1942839325941952659419619Ratregion
5506125UniSTS:4984218328678067786780760Ratregion
5506789G4539624027596796975968209Ratregion
5507197UniSTS:22524619629157084391571039Ratregion
5506941G3282014828742665987426807Ratregion
5499775UniSTS:23463931029247549592475805Ratregion
5501299CP-000F2122102457192102458466Ratregion
5505016Mirn124a-21042100134865100134969Ratregion
5502776GYG11172102648215102648332Ratregion
5502849Bhlhb58712100487952100488823Ratregion
5502415RH124784027424650474246699Ratregion
Position Markers

Flank 1: (D2Mit24)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,324,377 - 59,324,691 (+)MAPPER
Rnor_6.0260,325,352 - 60,325,665NCBI
Rnor_5.0284,360,871 - 84,361,184UniSTS
RGSC_v3.4259,700,886 - 59,701,200RGD
RGSC_v3.4259,700,887 - 59,701,200UniSTS
RGSC_v3.1259,629,119 - 59,629,433RGD
Celera259,347,132 - 59,347,445UniSTS
RH 3.4 Map2408.7UniSTS
RH 3.4 Map2408.7RGD
Cytogenetic Map2q16UniSTS
Peak: (D2Mgh5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22103,794,961 - 103,795,077 (+)MAPPER
Rnor_6.02106,432,800 - 106,432,915NCBI
Rnor_5.02126,162,627 - 126,162,742UniSTS
RGSC_v3.42106,523,430 - 106,523,545UniSTS
RGSC_v3.42106,523,429 - 106,523,545RGD
RGSC_v3.12106,468,392 - 106,468,507RGD
Celera299,140,726 - 99,140,841UniSTS
RH 3.4 Map2737.7UniSTS
RH 3.4 Map2737.7RGD
RH 2.0 Map2531.8RGD
Cytogenetic Map2 RGD
Flank 2: (D2Mgh5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22103,794,961 - 103,795,077 (+)MAPPER
Rnor_6.02106,432,800 - 106,432,915NCBI
Rnor_5.02126,162,627 - 126,162,742UniSTS
RGSC_v3.42106,523,430 - 106,523,545UniSTS
RGSC_v3.42106,523,429 - 106,523,545RGD
RGSC_v3.12106,468,392 - 106,468,507RGD
Celera299,140,726 - 99,140,841UniSTS
RH 3.4 Map2737.7UniSTS
RH 3.4 Map2737.7RGD
RH 2.0 Map2531.8RGD
Cytogenetic Map2 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1354592Rf50Renal function QTL 503.5urine output (VT:0003620)timed urine volume (CMO:0000260)25382274774786777Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)25653191259324719Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25666087974786777Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)25760561276539510Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)27478666494359546Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)27478666494359546Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
2317058Aia13Adjuvant induced arthritis QTL 132.9joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)27653932277991361Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)276539322102785628Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)276539322102785628Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 19 parental GK, 20 parental F344, 37 F1 and 206 F2 rats 5684953
qtl_general lineage: F1 animals from both the reciprocal crosses were used; 2 seperate F2 intercrosses were generated, one from grandmaternal GK and grandpaternal F344, the other from grandmaternal F344 and grandpaternal GK 5684953
qtl_general measurement method: at 215 days (mean age) rats kept under controlled conditions were sacrificed and left tibia was subjected to two-dimensional dual energy X-ray absorptiometry using a PIXImusTM densitometer (GE Lunar, Madison, WI) 5684953
qtl_general software used: bone mineral content and tibial area measured using GE Lunar software 5684953
qtl_general this region (45-57 cM) is determined in grandmaternal F344 and grandpaternal GK F2 male rats 5684953