Ptger4 (prostaglandin E receptor 4) - Rat Genome Database

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Gene: Ptger4 (prostaglandin E receptor 4) Rattus norvegicus
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Symbol: Ptger4
Name: prostaglandin E receptor 4
RGD ID: 628641
Description: Enables prostaglandin E receptor activity. Involved in several processes, including intracellular signaling cassette; regulation of cytokine production; and regulation of secretion. Located in neuron projection terminus; neuronal cell body; and nuclear membrane. Used to study acute kidney failure; cystitis; end stage renal disease; myocarditis; and osteoporosis. Biomarker of retinal ischemia and transient cerebral ischemia. Human ortholog(s) of this gene implicated in ankylosing spondylitis; arteriosclerosis; and ulcerative colitis. Orthologous to human PTGER4 (prostaglandin E receptor 4); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3-bis(4-hydroxyphenyl)propionitrile.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EP4; PGE receptor EP4 subtype; PGE receptor, EP4 subtype; PGE2 receptor EP4 subtype; prostaglandin E receptor 4 (subtype EP4); prostaglandin E2 receptor EP4 subtype; prostaglandin E2 receptor type 4; prostanoid EP4 receptor; Ptger; Ptgerep4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Gdil2
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8256,061,699 - 56,074,594 (-)NCBIGRCr8
mRatBN7.2254,330,563 - 54,347,451 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl254,335,424 - 54,346,670 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx261,442,386 - 61,453,021 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0259,501,061 - 59,511,697 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0254,511,378 - 54,522,007 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0254,951,625 - 54,966,470 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl254,952,821 - 54,963,448 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0273,974,390 - 73,987,294 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4254,423,280 - 54,433,907 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1254,351,507 - 54,362,753 (-)NCBI
Celera249,982,896 - 49,993,523 (-)NCBICelera
Cytogenetic Map2q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
Species
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Original Reference(s)
Ptger4Ratacute kidney failure treatmentIMP 10003092 RGD 
Ptger4RatAlzheimer's disease  ISOPtger4 (Mus musculus)6483525 RGD 
Ptger4Ratankylosing spondylitis  ISOPTGER4 (Homo sapiens)6483530 RGD 
Ptger4Rataortic aneurysm  ISOPtger4 (Mus musculus)6483518 RGD 
Ptger4Rataortic aneurysm  ISOPTGER4 (Homo sapiens)6483518 RGD 
Ptger4Ratarteriosclerosis  ISOPTGER4 (Homo sapiens)1581284 RGD 
Ptger4Ratcolitis  ISOPtger4 (Mus musculus)6483551 RGD 
Ptger4Ratcystitis  IDA 5147913 RGD 
Ptger4Ratend stage renal disease treatmentIMP 10003092 RGD 
Ptger4RatEndotoxemia  IEP 10043329protein:increased expression:paraventricular hypothalamic nucleus parvicellular division (rat)RGD 
Ptger4RatExperimental Arthritis treatmentISOPtger4 (Mus musculus)10003041 RGD 
Ptger4RatExperimental Arthritis disease_progressionIEP 10043377mRNA:increased expression:tarsal joint and synovium (rat)RGD 
Ptger4RatExperimental Arthritis treatmentIMP 10003052 RGD 
Ptger4RatExperimental Colitis treatmentIMP 727388 RGD 
Ptger4RatHearing Loss, Noise-Induced resistanceISOPtger4 (Mus musculus)6483524 RGD 
Ptger4RatHyperalgesia treatmentIMP 10003041 RGD 
Ptger4RatHypotension  IDA 1581283 RGD 
Ptger4RatInflammation treatmentIMP 10043613associated with Arthritis and ExperimentalRGD 
Ptger4Ratmyocarditis resistanceIMP 6483535 RGD 
Ptger4Ratnephrogenic diabetes insipidus treatmentISOPtger4 (Mus musculus)10003043 RGD 
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Ptger4RatNeurodevelopmental Disorders  ISOPTGER4 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
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Original Reference(s)
Ptger4Ratankylosing spondylitis  ISOPTGER4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21743469
Ptger4RatChloracne  ISOPTGER4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17101203
Ptger4Ratendometriosis  ISOPTGER4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19407222
Ptger4RatExperimental Arthritis  ISOPTGER4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18287210
Ptger4RatInflammation  ISOPTGER4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18287210
Ptger4Ratlymphoma  ISOPTGER4 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:19075289
Ptger4Ratovarian cyst  ISOPTGER4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21239663
Ptger4Ratsexual dysfunction  ISOPTGER4 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:18726914
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Original Reference(s)
Ptger4Ratdilated cardiomyopathy  ISSPtger4 (Mus musculus)13592920 MouseDO 

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Original Reference(s)
Ptger4Rat(-)-demecolcine increases expressionISOPTGER4 (Homo sapiens)6480464Demecolcine results in increased expression of PTGER4 mRNACTDPMID:23649840
Ptger4Rat17alpha-ethynylestradiol affects expressionISOPtger4 (Mus musculus)6480464Ethinyl Estradiol affects the expression of PTGER4 mRNACTDPMID:17555576
Ptger4Rat17alpha-ethynylestradiol multiple interactionsISOPtger4 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of PTGER4 mRNACTDPMID:17942748
Ptger4Rat17alpha-ethynylestradiol increases expressionISOPtger4 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of PTGER4 mRNACTDPMID:17942748
Ptger4Rat17beta-estradiol multiple interactionsISOPTGER4 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of PTGER4 mRNA more ...CTDPMID:19619570 more ...
Ptger4Rat17beta-estradiol multiple interactionsEXP 6480464PTGER4 mutant form inhibits the reaction [Estradiol results in increased expression of PPP1R9B protein]CTDPMID:17408863
Ptger4Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of PTGER4 proteinCTDPMID:22257560
Ptger4Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of PTGER4 mRNACTDPMID:22257560
Ptger4Rat17beta-estradiol decreases expressionISOPTGER4 (Homo sapiens)6480464Estradiol results in decreased expression of PTGER4 mRNACTDPMID:21185374 and PMID:31614463
Ptger4Rat17beta-estradiol increases expressionISOPTGER4 (Homo sapiens)6480464Estradiol results in increased expression of PTGER4 mRNACTDPMID:19153601 and PMID:19619570
Ptger4Rat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one increases expressionISOPTGER4 (Homo sapiens)6480464Metribolone results in increased expression of PTGER4 mRNACTDPMID:17010675
Ptger4Rat17beta-hydroxy-5alpha-androstan-3-one increases expressionISOPTGER4 (Homo sapiens)6480464Dihydrotestosterone results in increased expression of PTGER4 mRNACTDPMID:29581250
Ptger4Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOPTGER4 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of PTGER4 mRNACTDPMID:19619570
Ptger4Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of PTGER4 mRNACTDPMID:32387183
Ptger4Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOPtger4 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of PTGER4 mRNACTDPMID:17942748
Ptger4Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOPtger4 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of PTGER4 mRNACTDPMID:17942748
Ptger4Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOPTGER4 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of PTGER4 mRNACTDPMID:19619570
Ptger4Rat2,3-bis(4-hydroxyphenyl)propionitrile decreases expressionEXP 64804642 and 3-bis(4-hydroxyphenyl)-propionitrile results in decreased expression of PTGER4 mRNACTDPMID:22257560
Ptger4Rat2,4,6-trinitrobenzenesulfonic acid decreases expressionEXP 6480464Trinitrobenzenesulfonic Acid results in decreased expression of PTGER4 mRNACTDPMID:25526689
Ptger4Rat2,4-dinitrobenzenesulfonic acid decreases expressionISOPtger4 (Mus musculus)64804642 and 4-dinitrobenzenesulfonic acid results in decreased expression of PTGER4 mRNACTDPMID:30116771

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Biological Process
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Original Reference(s)
Ptger4Ratadenylate cyclase-activating G protein-coupled receptor signaling pathway involved_inISOPTGER4 (Homo sapiens)1624291 PMID:16204467 and PMID:8078484RGDPMID:16204467 and PMID:8078484
Ptger4Ratadenylate cyclase-activating G protein-coupled receptor signaling pathway involved_inIBAMGI:97793 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ptger4Ratadenylate cyclase-inhibiting G protein-coupled receptor signaling pathway involved_inISOPTGER4 (Homo sapiens)1624291 PMID:16204467RGDPMID:16204467
Ptger4Ratadenylate cyclase-modulating G protein-coupled receptor signaling pathway involved_inISSUniProtKB:P354081600115GO_REF:0000024UniProtGO_REF:0000024
Ptger4Ratadenylate cyclase-modulating G protein-coupled receptor signaling pathway involved_inISOPTGER4 (Homo sapiens)1624291 PMID:8163486RGDPMID:8163486
Ptger4Ratbone development involved_inIDA 8554254PMID:19233324UniProt 
Ptger4RatcAMP biosynthetic process  IMP 10003101 RGD 
Ptger4RatcAMP/PKA signal transduction  IMP 10003101 RGD 
Ptger4Ratcellular response to glucose stimulus  IEP 10043387 RGD 
Ptger4Ratcellular response to interleukin-1  IEP 10043377 RGD 
Ptger4Ratcellular response to mechanical stimulus involved_inISSUniProtKB:P322401600115GO_REF:0000024UniProtGO_REF:0000024
Ptger4Ratcellular response to mechanical stimulus involved_inISOPtger4 (Mus musculus)1624291 PMID:14665434RGDPMID:14665434
Ptger4Ratcellular response to prostaglandin E stimulus  IEP 10043612 RGD 
Ptger4Ratcellular response to prostaglandin E stimulus involved_inIBAPANTHER:PTN002627505 and Ptger4 (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ptger4Ratcellular response to prostaglandin E stimulus  IMP 10003101 RGD 
Ptger4Ratchemokinesis  IMP 10043355 RGD 
Ptger4Ratductus arteriosus closure  IMP 10003042 RGD 
Ptger4RatERK1 and ERK2 cascade involved_inIDA 8554254PMID:19233324UniProt 
Ptger4Ratfemale pregnancy  IEP 10003032 RGD 
Ptger4Ratfemale pregnancy  IEP 10043343 RGD 
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Cellular Component
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Original Reference(s)
Ptger4Ratmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Ptger4Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Ptger4Ratneuron projection terminus  IDA 10003094 RGD 
Ptger4Ratneuronal cell body  IDA 10003094 RGD 
Ptger4Ratnuclear membrane  IDA 9850259 RGD 
Ptger4Ratplasma membrane is_active_inISOPTGER4 (Homo sapiens)1624291 PMID:16424369 and PMID:8163486RGDPMID:16424369 and PMID:8163486
Ptger4Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Ptger4Ratplasma membrane is_active_inIBAMGI:102966 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ptger4Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
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Molecular Function
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Reference Title
Reference Citation
1. Localization of functional prostaglandin E2 receptors EP3 and EP4 in the nuclear envelope. Bhattacharya M, etal., J Biol Chem. 1999 May 28;274(22):15719-24.
2. Discovery of highly selective EP4 receptor agonists that stimulate new bone formation and restore bone mass in ovariectomized rats. Cameron KO, etal., Bioorg Med Chem Lett. 2006 Apr 1;16(7):1799-802. Epub 2006 Jan 26.
3. Stimulation of EP4 receptor enhanced bone consolidation during distraction osteogenesis. Chang F, etal., J Orthop Res. 2007 Feb;25(2):221-9.
4. A novel antagonist of the prostaglandin E(2) EP(4) receptor inhibits Th1 differentiation and Th17 expansion and is orally active in arthritis models. Chen Q, etal., Br J Pharmacol. 2010 May;160(2):292-310. doi: 10.1111/j.1476-5381.2010.00647.x.
5. Expression and regulation of the rat prostaglandin E2 receptor type 4 (EP4) in pregnant cervical tissue. Chien EK and Macgregor C, Am J Obstet Gynecol. 2003 Nov;189(5):1501-10.
6. Expression of prostaglandin E2 receptor subtypes, EP2 and EP4, in the rat hippocampus after cerebral ischemia and ischemic tolerance. Choi JS, etal., Cell Tissue Res. 2006 May;324(2):203-11. Epub 2006 Jan 26.
7. Intravesical immune suppression by liposomal tacrolimus in cyclophosphamide-induced inflammatory cystitis. Chuang YC, etal., Neurourol Urodyn. 2011 Mar;30(3):421-7. doi: 10.1002/nau.20981. Epub 2010 Sep 21.
8. Association between prostaglandin E receptor subtype EP4 overexpression and unstable phenotype in atherosclerotic plaques in human. Cipollone F, etal., Arterioscler Thromb Vasc Biol. 2005 Sep;25(9):1925-31. Epub 2005 Jul 14.
9. MF498 [N-{[4-(5,9-Diethoxy-6-oxo-6,8-dihydro-7H-pyrrolo[3,4-g]quinolin-7-yl)-3-methylbe nzyl]sulfonyl}-2-(2-methoxyphenyl)acetamide], a selective E prostanoid receptor 4 antagonist, relieves joint inflammation and pain in rodent models of rheumatoid and osteoarthritis. Clark P, etal., J Pharmacol Exp Ther. 2008 May;325(2):425-34. doi: 10.1124/jpet.107.134510. Epub 2008 Feb 20.
10. Role of prostaglandin E2 receptor subtypes in ovarian follicle growth in the rat in vivo. Correlation with interleukin-8 and neutrophils. El-Nefiawy N, etal., Histol Histopathol. 2005 Jul;20(3):825-31.
11. Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility. Evans DM, etal., Nat Genet. 2011 Jul 10;43(8):761-7. doi: 10.1038/ng.873.
12. Prostaglandin E2 activates Stat3 in neonatal rat ventricular cardiomyocytes: A role in cardiac hypertrophy. Frias MA, etal., Cardiovasc Res. 2007 Jan 1;73(1):57-65. Epub 2006 Sep 27.
13. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
14. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
15. Role of PGE-type receptor 4 in auditory function and noise-induced hearing loss in mice. Hamaguchi K, etal., Neuropharmacology. 2012 Mar;62(4):1841-7. Epub 2011 Dec 16.
16. Cyclooxygenase-2/prostaglandin E2 accelerates the healing of gastric ulcers via EP4 receptors. Hatazawa R, etal., Am J Physiol Gastrointest Liver Physiol. 2007 Oct;293(4):G788-97. Epub 2007 Aug 2.
17. EP4 agonist inhibits lipopolysaccharide-induced mucus secretion in airway epithelial cells. Hattori R, etal., Ann Otol Rhinol Laryngol. 2008 Jan;117(1):51-8.
18. Hormonal regulation of prostaglandin E2 receptors: localization and expression in rat cervical tissue. Hinton AC, etal., Reprod Sci. 2010 Feb;17(2):136-46. doi: 10.1177/1933719109348068. Epub 2009 Oct 2.
19. Improvement of cognitive function in Alzheimer's disease model mice by genetic and pharmacological inhibition of the EP(4) receptor. Hoshino T, etal., J Neurochem. 2012 Mar;120(5):795-805. doi: 10.1111/j.1471-4159.2011.07567.x. Epub 2012 Jan 23.
20. Differential regulation of renal prostaglandin receptor mRNAs by dietary salt intake in the rat. Jensen BL, etal., Kidney Int. 1999 Aug;56(2):528-37.
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PMID:8163486   PMID:8185583   PMID:8862514   PMID:9537820   PMID:10749873   PMID:11602631   PMID:12853415   PMID:14552899   PMID:14665434   PMID:15194560   PMID:15626689   PMID:15834430  
PMID:16424369   PMID:17110143   PMID:17943254   PMID:17947453   PMID:18270204   PMID:18684231   PMID:18843255   PMID:19465928   PMID:20586869   PMID:20713561   PMID:21549696   PMID:21681739  
PMID:21723865   PMID:21768374   PMID:21840386   PMID:21939736   PMID:22061836   PMID:23220160   PMID:24146253   PMID:24560715   PMID:24849498   PMID:25263346   PMID:27060485   PMID:29031391  
PMID:31455205   PMID:32094439   PMID:32165825   PMID:34003864   PMID:36889213  



Ptger4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8256,061,699 - 56,074,594 (-)NCBIGRCr8
mRatBN7.2254,330,563 - 54,347,451 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl254,335,424 - 54,346,670 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx261,442,386 - 61,453,021 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0259,501,061 - 59,511,697 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0254,511,378 - 54,522,007 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0254,951,625 - 54,966,470 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl254,952,821 - 54,963,448 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0273,974,390 - 73,987,294 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4254,423,280 - 54,433,907 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1254,351,507 - 54,362,753 (-)NCBI
Celera249,982,896 - 49,993,523 (-)NCBICelera
Cytogenetic Map2q16NCBI
PTGER4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38540,679,915 - 40,746,800 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl540,679,915 - 40,693,735 (+)EnsemblGRCh38hg38GRCh38
GRCh37540,680,017 - 40,693,837 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36540,715,789 - 40,729,594 (+)NCBINCBI36Build 36hg18NCBI36
Build 34540,715,788 - 40,729,592NCBI
Celera540,568,598 - 40,582,403 (+)NCBICelera
Cytogenetic Map5p13.1NCBI
HuRef540,632,020 - 40,645,825 (+)NCBIHuRef
CHM1_1540,681,992 - 40,695,797 (+)NCBICHM1_1
T2T-CHM13v2.0540,936,331 - 41,003,197 (+)NCBIT2T-CHM13v2.0
Ptger4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39155,262,880 - 5,273,668 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl155,236,142 - 5,273,668 (-)EnsemblGRCm39 Ensembl
GRCm38155,233,399 - 5,244,187 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl155,206,661 - 5,244,187 (-)EnsemblGRCm38mm10GRCm38
MGSCv37155,183,404 - 5,193,831 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36155,181,080 - 5,191,046 (-)NCBIMGSCv36mm8
Celera155,082,719 - 5,093,146 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map151.99NCBI
Ptger4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542624,997,811 - 25,010,822 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542624,997,811 - 25,010,822 (+)NCBIChiLan1.0ChiLan1.0
PTGER4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2469,643,990 - 69,657,266 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1567,797,598 - 67,810,852 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0569,686,906 - 69,700,739 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1574,731,470 - 74,745,121 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl574,731,470 - 74,745,148 (-)Ensemblpanpan1.1panPan2
PTGER4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1468,663,362 - 68,676,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl468,663,364 - 68,676,358 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha468,339,460 - 68,352,693 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0469,169,559 - 69,182,795 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl469,169,566 - 69,182,795 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1468,929,030 - 68,942,269 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0469,042,114 - 69,055,368 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0469,581,192 - 69,594,491 (-)NCBIUU_Cfam_GSD_1.0
Ptger4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213229,454,672 - 229,468,133 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365181,903,725 - 1,916,746 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365181,903,636 - 1,916,746 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGER4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1625,670,862 - 25,686,552 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11625,670,832 - 25,686,556 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PTGER4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1439,440,697 - 39,453,983 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl439,440,276 - 39,454,004 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607129,862,058 - 29,876,121 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptger4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475914,244,899 - 14,258,445 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475914,243,887 - 14,259,090 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ptger4
67 total Variants


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
2 54345460 54345461 C G snv F344/DuCrl (2019NG), F344/NCrl (2019) View more Information


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
2 54962851 54962852 C G snv F344/NCrl (2019) View more Information

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:33
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000017886
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat

1 to 10 of 45 rows
SHGC-64757  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2254,345,526 - 54,345,700 (+)MAPPERmRatBN7.2
Rnor_6.0254,962,918 - 54,963,091NCBIRnor6.0
Rnor_5.0273,985,678 - 73,985,851UniSTSRnor5.0
RGSC_v3.4254,433,377 - 54,433,550UniSTSRGSC3.4
Celera249,992,993 - 49,993,166UniSTS
Cytogenetic Map2q16UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000017886   ⟹   ENSRNOP00000017886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl254,335,424 - 54,346,670 (-)Ensembl
Rnor_6.0 Ensembl254,952,821 - 54,963,448 (-)Ensembl
RefSeq Acc Id: NM_032076   ⟹   NP_114465
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8256,062,895 - 56,073,522 (-)NCBI
mRatBN7.2254,335,429 - 54,346,057 (-)NCBI
Rnor_6.0254,952,821 - 54,963,448 (-)NCBI
Rnor_5.0273,974,390 - 73,987,294 (-)NCBI
RGSC_v3.4254,423,280 - 54,433,907 (-)RGD
Celera249,982,896 - 49,993,523 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231996   ⟹   XP_006232058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8256,061,699 - 56,074,572 (-)NCBI
mRatBN7.2254,330,563 - 54,347,450 (-)NCBI
Rnor_6.0254,951,625 - 54,966,470 (-)NCBI
Rnor_5.0273,974,390 - 73,987,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039103261   ⟹   XP_038959189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8256,061,699 - 56,074,594 (-)NCBI
mRatBN7.2254,330,563 - 54,347,451 (-)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_114465 (Get FASTA)   NCBI Sequence Viewer  
  XP_006232058 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959189 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB53326 (Get FASTA)   NCBI Sequence Viewer  
  AAP37289 (Get FASTA)   NCBI Sequence Viewer  
  BAA06011 (Get FASTA)   NCBI Sequence Viewer  
  EDL75720 (Get FASTA)   NCBI Sequence Viewer  
  EDL75721 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017886
  ENSRNOP00000102242
GenBank Protein P43114 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_114465   ⟸   NM_032076
- UniProtKB: O08728 (UniProtKB/Swiss-Prot),   P43114 (UniProtKB/Swiss-Prot),   A0A0G2JSM6 (UniProtKB/TrEMBL),   A6KGE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232058   ⟸   XM_006231996
- Peptide Label: isoform X1
- UniProtKB: O08728 (UniProtKB/Swiss-Prot),   P43114 (UniProtKB/Swiss-Prot),   A0A0G2JSM6 (UniProtKB/TrEMBL),   A6KGE5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017886   ⟸   ENSRNOT00000017886
RefSeq Acc Id: XP_038959189   ⟸   XM_039103261
- Peptide Label: isoform X1
- UniProtKB: P43114 (UniProtKB/Swiss-Prot),   O08728 (UniProtKB/Swiss-Prot),   A0A0G2JSM6 (UniProtKB/TrEMBL),   A6KGE5 (UniProtKB/TrEMBL)
Name Modeler Protein Id AA Range Protein Structure
AF-P43114-F1-model_v2 AlphaFold P43114 1-488 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 30 of 30 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-54174 BioCyc
Ensembl Genes ENSRNOG00000013240 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000017886 ENTREZGENE
  ENSRNOT00000131156 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Prost_EP4_rcpt UniProtKB/Swiss-Prot
  Prostanoid_rcpt UniProtKB/Swiss-Prot
  Prostglndn_DP_rcpt UniProtKB/Swiss-Prot
KEGG Report rno:84023 UniProtKB/Swiss-Prot
NCBI Gene 84023 ENTREZGENE
PANTHER PTHR11866 UniProtKB/Swiss-Prot
  PTHR11866:SF6 UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PhenoGen Ptger4 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  PROSTAGLNDNR UniProtKB/Swiss-Prot
  PROSTANOIDR UniProtKB/Swiss-Prot
  PRSTNOIDEP4R UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000013240 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt A0A0G2JSM6 ENTREZGENE, UniProtKB/TrEMBL
  A6KGE4_RAT UniProtKB/TrEMBL
  A6KGE5 ENTREZGENE, UniProtKB/TrEMBL
  O08728 ENTREZGENE
  P43114 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O08728 UniProtKB/Swiss-Prot
1 to 30 of 30 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Ptger4  prostaglandin E receptor 4  Ptger4  prostaglandin E receptor 4 (subtype EP4)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Ptger4  prostaglandin E receptor 4 (subtype EP4)  Ptger4  prostaglandin E receptor 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Ptger4  prostaglandin E receptor 4 (subtype EP4)      Symbol and Name status set to approved 625702 APPROVED
2003-02-27 Ptger4  prostaglandin E receptor 4 (subtype EP4)      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_disease intestinal mRNA expression increases in a dextran sodium sulfate-induced colitis model 727388