Cartpt (CART prepropeptide) - Rat Genome Database

Name: Cartpt
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cartpt (CART prepropeptide) Rattus norvegicus

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Symbol:

Cartpt

Name:

CART prepropeptide

Description:

Predicted to have neuropeptide hormone activity. Involved in several processes, including adult feeding behavior; circadian regulation of gene expression; and regulation of peptide hormone secretion. Localizes to the extracellular space. Biomarker of type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in obesity. Orthologous to human CARTPT (CART prepropeptide); INTERACTS WITH (3,4-dihydroxyphenyl)acetic acid; (S)-nicotine; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

Cart; cocaine and amphetamine regulated transcript; cocaine- and amphetamine-regulated transcript protein

Orthologs:

Homo sapiens (human) : CARTPT (CART prepropeptide) HGNC Alliance
Mus musculus (house mouse) : Cartpt (CART prepropeptide) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cartpt (CART prepropeptide)
Pan paniscus (bonobo/pygmy chimpanzee) : CARTPT (CART prepropeptide)
Canis lupus familiaris (dog) : CARTPT (CART prepropeptide)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cartpt (CART prepropeptide)
Sus scrofa (pig) : CARTPT (CART prepropeptide)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CARTPT (CART prepropeptide)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cartpt (CART prepropeptide)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Cartpt (CART prepropeptide)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CARTPT (CART prepropeptide)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CARTPT (CART prepropeptide)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cartpt (CART prepropeptide)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CARTPT (CART prepropeptide)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Cartpt (CART prepropeptide)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Homo sapiens (human):	CARTPT (CART prepropeptide)	Alliance	DIOPT (Ensembl Compara, HGNC, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Danio rerio (zebrafish):	cart2 (cocaine- and amphetamine-regulated transcript 2)	Alliance	DIOPT (InParanoid, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Danio rerio (zebrafish):	cart1 (cocaine- and amphetamine-regulated transcript 1)	Alliance	DIOPT (Hieranoid, OrthoFinder, PANTHER, PhylomeDB, TreeFam)
Danio rerio (zebrafish):	cart4 (cocaine- and amphetamine-regulated transcript 4)	Alliance	DIOPT (Ensembl Compara, PANTHER, PhylomeDB, TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	2	30,125,249 - 30,127,408 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	30,125,249 - 30,127,269 (-)	Ensembl
Rnor_5.0	2	49,285,118 - 49,287,405 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	30,889,817 - 30,891,837 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	30,810,185 - 30,812,206 (-)	NCBI
Celera	2	27,276,402 - 27,278,422 (-)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

JBrowse:

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Disease Annotations

Gene-Chemical Interaction Annotations

Gene Ontology Annotations

References - curated

References - uncurated

Genomics

Comparative Map Data

QTLs in Region (Rnor_6.0)

miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences

Protein Sequences

Transcriptome

Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links

Nomenclature History

RGD Curation Notes

More on Cartpt
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	2272
Created:	2000-05-25
Species:	Rattus norvegicus
Last Modified:	2019-11-27
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - ClinVar

Imported Annotations - CTD

Imported Annotations - OMIM