Cplane1 (ciliogenesis and planar polarity effector complex subunit 1) - Rat Genome Database

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Gene: Cplane1 (ciliogenesis and planar polarity effector complex subunit 1) Rattus norvegicus
Analyze
Symbol: Cplane1
Name: ciliogenesis and planar polarity effector complex subunit 1
RGD ID: 1310081
Description: Predicted to be involved in cilium assembly. Predicted to act upstream of or within several processes, including embryonic digit morphogenesis; heart development; and protein localization to ciliary transition zone. Predicted to be active in ciliary transition zone. Human ortholog(s) of this gene implicated in Joubert syndrome 17 and Joubert syndrome with orofaciodigital defect. Orthologous to human CPLANE1 (ciliogenesis and planar polarity effector complex subunit 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ciliogenesis and planar polarity effector 1; hypothetical protein LOC679830; hypothetical protein LOC679859; LOC294784; LOC679830; LOC679859; RGD1310081; similar to hypothetical protein FLJ13231; uncharacterized protein C5orf42 homolog; uncharacterized protein LOC310137
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2257,269,195 - 57,369,580 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl257,268,884 - 57,369,500 (+)Ensembl
Rnor_6.0257,274,175 - 57,350,003 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0257,444,373 - 57,472,465 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl257,276,919 - 57,348,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0278,930,709 - 78,957,363 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0277,281,470 - 77,355,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4257,781,798 - 57,879,499 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1257,786,118 - 57,807,727 (+)NCBI
Celera252,883,480 - 52,984,165 (+)NCBICelera
Cytogenetic Map2q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Novel Jbts17 mutant mouse model of Joubert syndrome with cilia transition zone defects and cerebellar and other ciliopathy related anomalies. Damerla RR, etal., Hum Mol Genet. 2015 Jul 15;24(14):3994-4005. doi: 10.1093/hmg/ddv137. Epub 2015 Apr 15.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:25807483  


Genomics

Comparative Map Data
Cplane1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2257,269,195 - 57,369,580 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl257,268,884 - 57,369,500 (+)Ensembl
Rnor_6.0257,274,175 - 57,350,003 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0257,444,373 - 57,472,465 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl257,276,919 - 57,348,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0278,930,709 - 78,957,363 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0277,281,470 - 77,355,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4257,781,798 - 57,879,499 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1257,786,118 - 57,807,727 (+)NCBI
Celera252,883,480 - 52,984,165 (+)NCBICelera
Cytogenetic Map2q16NCBI
CPLANE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38537,075,669 - 37,249,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl537,106,228 - 37,249,376 (-)EnsemblGRCh38hg38GRCh38
GRCh37537,106,337 - 37,249,478 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36537,142,087 - 37,249,612 (-)NCBINCBI36hg18NCBI36
Celera536,993,297 - 37,136,467 (-)NCBI
Cytogenetic Map5p13.2NCBI
HuRef537,059,009 - 37,201,999 (-)NCBIHuRef
CHM1_1537,109,131 - 37,252,316 (-)NCBICHM1_1
T2T-CHM13v2.0537,356,068 - 37,499,181 (-)NCBI
Cplane1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,198,509 - 8,300,642 (+)NCBIGRCm39mm39
GRCm39 Ensembl158,198,590 - 8,300,642 (+)Ensembl
GRCm38158,169,025 - 8,271,158 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,169,106 - 8,271,158 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,119,106 - 8,221,158 (+)NCBIGRCm37mm9NCBIm37
MGSCv36158,116,266 - 8,218,373 (+)NCBImm8
Celera158,013,530 - 8,115,870 (+)NCBICelera
Cytogenetic Map15A1NCBI
Cplane1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542621,868,017 - 21,983,747 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542621,867,876 - 21,991,889 (-)NCBIChiLan1.0ChiLan1.0
CPLANE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1578,402,466 - 78,544,807 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl578,402,466 - 78,544,807 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0573,122,305 - 73,265,343 (+)NCBIMhudiblu_PPA_v0panPan3
CPLANE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1471,435,994 - 71,567,567 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl471,430,575 - 71,567,267 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha471,040,347 - 71,177,378 (+)NCBI
ROS_Cfam_1.0471,939,865 - 72,077,171 (+)NCBI
ROS_Cfam_1.0 Ensembl471,939,851 - 72,077,149 (+)Ensembl
UMICH_Zoey_3.1471,687,689 - 71,824,420 (+)NCBI
UNSW_CanFamBas_1.0471,808,054 - 71,946,062 (+)NCBI
UU_Cfam_GSD_1.0472,340,676 - 72,477,998 (+)NCBI
Cplane1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBI
SpeTri2.0NW_0049365184,706,496 - 4,847,283 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPLANE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1622,381,327 - 22,500,998 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11622,381,001 - 22,501,052 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21623,534,129 - 23,653,296 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPLANE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1435,981,299 - 36,131,575 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl435,979,110 - 36,130,565 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607126,323,302 - 26,479,971 (-)NCBIVero_WHO_p1.0
Cplane1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475917,763,585 - 17,855,954 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462475917,763,200 - 17,879,603 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH143089  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2257,301,723 - 57,301,988 (+)MAPPERmRatBN7.2
Rnor_6.0257,306,849 - 57,307,113NCBIRnor6.0
Rnor_5.0277,314,151 - 77,314,415UniSTSRnor5.0
RGSC_v3.4257,811,779 - 57,812,043UniSTSRGSC3.4
Celera252,916,304 - 52,916,568UniSTS
RH 3.4 Map2331.9UniSTS
Cytogenetic Map2q16UniSTS
RH143471  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2257,310,492 - 57,310,668 (+)MAPPERmRatBN7.2
Rnor_6.0257,315,687 - 57,315,862NCBIRnor6.0
Rnor_5.0277,322,657 - 77,322,832UniSTSRnor5.0
RGSC_v3.4257,820,331 - 57,820,506UniSTSRGSC3.4
Celera252,925,105 - 52,925,280UniSTS
RH 3.4 Map2283.7UniSTS
Cytogenetic Map2q16UniSTS
RH138393  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2257,369,322 - 57,369,447 (+)MAPPERmRatBN7.2
Rnor_6.0257,472,204 - 57,472,328NCBIRnor6.0
Rnor_5.0278,957,102 - 78,957,226UniSTSRnor5.0
RGSC_v3.4257,879,238 - 57,879,362UniSTSRGSC3.4
Celera252,983,904 - 52,984,028UniSTS
RH 3.4 Map2331.7UniSTS
Cytogenetic Map2q16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1354592Rf50Renal function QTL 503.5urine output (VT:0003620)timed urine volume (CMO:0000260)25382274774786777Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)25653191259324719Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25666087974786777Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:65
Interacting mature miRNAs:65
Transcripts:ENSRNOT00000063899
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 74 4 29 4
Low 2 41 41 25 19 25 8 8 31 12 7 8
Below cutoff 1 2 15 15 15 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000063899   ⟹   ENSRNOP00000060886
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl257,268,884 - 57,369,500 (+)Ensembl
Rnor_6.0 Ensembl257,276,919 - 57,348,481 (+)Ensembl
RefSeq Acc Id: XM_006232032   ⟹   XP_006232094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2257,269,195 - 57,359,585 (+)NCBI
Rnor_6.0257,274,175 - 57,350,003 (+)NCBI
Rnor_5.0277,281,470 - 77,355,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103529   ⟹   XP_038959457
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2257,269,195 - 57,369,580 (+)NCBI
RefSeq Acc Id: XM_039103530   ⟹   XP_038959458
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2257,269,195 - 57,369,580 (+)NCBI
RefSeq Acc Id: XM_039103531   ⟹   XP_038959459
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2257,269,195 - 57,369,580 (+)NCBI
RefSeq Acc Id: XM_039103532   ⟹   XP_038959460
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2257,269,195 - 57,369,580 (+)NCBI
RefSeq Acc Id: XM_039103533   ⟹   XP_038959461
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2257,269,195 - 57,369,580 (+)NCBI
RefSeq Acc Id: XM_039103534   ⟹   XP_038959462
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2257,283,160 - 57,369,580 (+)NCBI
RefSeq Acc Id: XM_039103535   ⟹   XP_038959463
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2257,303,005 - 57,369,580 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_006232094   ⟸   XM_006232032
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000060886   ⟸   ENSRNOT00000063899
RefSeq Acc Id: XP_038959457   ⟸   XM_039103529
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038959461   ⟸   XM_039103533
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038959459   ⟸   XM_039103531
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959458   ⟸   XM_039103530
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038959460   ⟸   XM_039103532
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038959462   ⟸   XM_039103534
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038959463   ⟸   XM_039103535
- Peptide Label: isoform X8

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZK35-F1-model_v2 AlphaFold D3ZK35 1-2628 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310081 AgrOrtholog
BioCyc Gene G2FUF-54123 BioCyc
Ensembl Genes ENSRNOG00000042118 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000060886 ENTREZGENE
  ENSRNOP00000060886.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000063899 ENTREZGENE
  ENSRNOT00000063899.4 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134040 IMAGE-MGC_LOAD
InterPro Joubert UniProtKB/TrEMBL
MGC_CLONE MGC:95272 IMAGE-MGC_LOAD
NCBI Gene 310137 ENTREZGENE
PANTHER PTHR14492 UniProtKB/TrEMBL
PhenoGen Cplane1 PhenoGen
UniProt D3ZK35_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-12-09 Cplane1  ciliogenesis and planar polarity effector complex subunit 1  Cplane1  ciliogenesis and planar polarity effector 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-03-22 Cplane1  ciliogenesis and planar polarity effector 1  RGD1310081  similar to hypothetical protein FLJ13231  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 RGD1310081  similar to hypothetical protein FLJ13231  LOC679830  hypothetical protein LOC679830  Data Merged 737654 PROVISIONAL
2015-07-29 RGD1310081  similar to hypothetical protein FLJ13231  LOC679859  hypothetical protein LOC679859  Data Merged 737654 PROVISIONAL
2008-04-30 RGD1310081  similar to hypothetical protein FLJ13231   RGD1310081_predicted  similar to hypothetical protein FLJ13231 (predicted)  'predicted' is removed 2292626 APPROVED
2008-01-09 LOC679830  hypothetical protein LOC679830  LOC679442  hypothetical protein LOC679442  Data Merged 1643240 APPROVED
2008-01-09 LOC679859  hypothetical protein LOC679859  LOC679460  hypothetical protein LOC679460  Data Merged 1643240 APPROVED
2006-11-19 LOC679830  hypothetical protein LOC679830      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679859  hypothetical protein LOC679859      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679460  hypothetical protein LOC679460      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679442  hypothetical protein LOC679442      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1310081_predicted  similar to hypothetical protein FLJ13231 (predicted)  LOC294784_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294784_predicted  similar to hypothetical protein FLJ13231 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL