Fyb1 (FYN binding protein 1) - Rat Genome Database

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Gene: Fyb1 (FYN binding protein 1) Rattus norvegicus
Analyze
Symbol: Fyb1
Name: FYN binding protein 1
RGD ID: 1563421
Description: Predicted to enable lipid binding activity. Predicted to be involved in T cell receptor signaling pathway; integrin-mediated signaling pathway; and protein localization to plasma membrane. Predicted to be located in several cellular components, including actin cytoskeleton; anchoring junction; and nucleus. Predicted to be part of protein-containing complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in thrombocytopenia. Orthologous to human FYB1 (FYN binding protein 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ADAP; Fyb; FYB-120/130; FYN binding protein; FYN binding protein (FYB-120/130); FYN-binding protein; FYN-binding protein 1; LOC499537; p120/p130; RGD1563421; similar to FYN binding protein; SLAP-130; SLP-76-associated phosphoprotein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2255,621,585 - 55,781,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl255,632,698 - 55,779,629 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx262,788,995 - 62,878,724 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0260,862,372 - 60,953,666 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0255,864,992 - 55,954,723 (+)NCBIRnor_WKY
Rnor_6.0255,834,904 - 55,983,805 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl255,835,151 - 55,983,804 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0275,576,934 - 75,725,130 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4255,858,764 - 55,950,014 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera251,310,594 - 51,399,297 (+)NCBICelera
Cytogenetic Map2q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Targeting of MIST to Src-family kinases via SKAP55-SLAP-130 adaptor complex in mast cells. Fujii Y, etal., FEBS Lett 2003 Apr 10;540(1-3):111-6.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15153494   PMID:17403904  


Genomics

Comparative Map Data
Fyb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2255,621,585 - 55,781,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl255,632,698 - 55,779,629 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx262,788,995 - 62,878,724 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0260,862,372 - 60,953,666 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0255,864,992 - 55,954,723 (+)NCBIRnor_WKY
Rnor_6.0255,834,904 - 55,983,805 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl255,835,151 - 55,983,804 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0275,576,934 - 75,725,130 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4255,858,764 - 55,950,014 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera251,310,594 - 51,399,297 (+)NCBICelera
Cytogenetic Map2q16NCBI
FYB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38539,105,252 - 39,274,528 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl539,105,252 - 39,274,528 (-)EnsemblGRCh38hg38GRCh38
GRCh37539,105,354 - 39,270,751 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36539,141,114 - 39,255,424 (-)NCBINCBI36Build 36hg18NCBI36
Celera538,991,920 - 39,106,222 (-)NCBICelera
Cytogenetic Map5p13.1NCBI
HuRef539,056,971 - 39,222,025 (-)NCBIHuRef
CHM1_1539,107,349 - 39,272,677 (-)NCBICHM1_1
T2T-CHM13v2.0539,354,788 - 39,520,153 (-)NCBIT2T-CHM13v2.0
Fyb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39156,552,280 - 6,695,089 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl156,552,334 - 6,692,794 (+)EnsemblGRCm39 Ensembl
GRCm38156,522,796 - 6,665,608 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl156,522,853 - 6,663,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv37156,529,871 - 6,613,312 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36156,527,086 - 6,610,527 (+)NCBIMGSCv36mm8
Celera156,428,716 - 6,511,910 (+)NCBICelera
Cytogenetic Map15A1NCBI
Fyb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542623,622,004 - 23,717,454 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542623,621,355 - 23,777,086 (-)NCBIChiLan1.0ChiLan1.0
FYB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1576,194,420 - 76,307,792 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0571,100,184 - 71,268,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FYB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1469,729,481 - 69,876,962 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl469,729,462 - 69,874,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha469,403,032 - 69,553,362 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0470,242,306 - 70,392,973 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl470,245,209 - 70,392,326 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1469,991,531 - 70,141,946 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0470,103,843 - 70,254,571 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0470,643,055 - 70,793,407 (+)NCBIUU_Cfam_GSD_1.0
Fyb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213228,201,201 - 228,364,092 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365183,063,257 - 3,169,469 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FYB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1624,333,033 - 24,507,740 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11624,332,539 - 24,507,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21625,519,895 - 25,621,417 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FYB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1437,912,771 - 38,078,727 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl437,914,956 - 38,012,623 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607128,282,137 - 28,448,698 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fyb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475915,683,779 - 15,793,908 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475915,683,741 - 15,794,628 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fyb1
596 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:24
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000018634
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
12879863Bp402Blood pressure QTL 4020.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24112578956532139Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1354592Rf50Renal function QTL 503.5urine output (VT:0003620)timed urine volume (CMO:0000260)25382274774786777Rat

Markers in Region
RH126691  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0255,961,691 - 55,962,613NCBIRnor6.0
Rnor_5.0275,703,171 - 75,703,938NCBIRnor5.0
RGSC_v3.4255,929,375 - 55,930,840UniSTSRGSC3.4
Celera251,380,085 - 51,381,685UniSTS
Cytogenetic Map2q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 20 12 19 12 1 3 10
Low 1 43 37 29 29 8 8 74 34 36 1 8
Below cutoff 3 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_590914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000018634   ⟹   ENSRNOP00000018634
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl255,632,698 - 55,779,629 (+)Ensembl
Rnor_6.0 Ensembl255,835,151 - 55,983,804 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104137   ⟹   ENSRNOP00000083646
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl255,632,698 - 55,779,629 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113006   ⟹   ENSRNOP00000085597
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl255,689,071 - 55,760,617 (+)Ensembl
RefSeq Acc Id: NM_001109176   ⟹   NP_001102646
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,689,071 - 55,778,801 (+)NCBI
Rnor_6.0255,891,542 - 55,981,400 (+)NCBI
Rnor_5.0275,576,934 - 75,725,130 (+)NCBI
RGSC_v3.4255,858,764 - 55,950,014 (+)RGD
Celera251,310,594 - 51,399,297 (+)RGD
Sequence:
RefSeq Acc Id: XM_006232019   ⟹   XP_006232081
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,632,700 - 55,781,206 (+)NCBI
Rnor_6.0255,834,906 - 55,983,805 (+)NCBI
Rnor_5.0275,576,934 - 75,725,130 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760785   ⟹   XP_008759007
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,632,700 - 55,781,206 (+)NCBI
Rnor_6.0255,834,904 - 55,979,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039102834   ⟹   XP_038958762
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,678,603 - 55,781,206 (+)NCBI
RefSeq Acc Id: XM_039102835   ⟹   XP_038958763
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,678,602 - 55,781,206 (+)NCBI
RefSeq Acc Id: XM_039102836   ⟹   XP_038958764
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,632,779 - 55,781,206 (+)NCBI
RefSeq Acc Id: XM_039102837   ⟹   XP_038958765
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,645,030 - 55,781,206 (+)NCBI
RefSeq Acc Id: XM_039102838   ⟹   XP_038958766
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,621,585 - 55,781,206 (+)NCBI
RefSeq Acc Id: XM_039102839   ⟹   XP_038958767
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,632,700 - 55,781,206 (+)NCBI
RefSeq Acc Id: XR_005500334
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,632,700 - 55,781,206 (+)NCBI
RefSeq Acc Id: XR_005500335
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2255,632,700 - 55,759,755 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001102646   ⟸   NM_001109176
- Sequence:
RefSeq Acc Id: XP_006232081   ⟸   XM_006232019
- Peptide Label: isoform X1
- UniProtKB: D3ZIE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759007   ⟸   XM_008760785
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000018634   ⟸   ENSRNOT00000018634
RefSeq Acc Id: XP_038958766   ⟸   XM_039102838
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958767   ⟸   XM_039102839
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038958764   ⟸   XM_039102836
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958765   ⟸   XM_039102837
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958763   ⟸   XM_039102835
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958762   ⟸   XM_039102834
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000083646   ⟸   ENSRNOT00000104137
RefSeq Acc Id: ENSRNOP00000085597   ⟸   ENSRNOT00000113006
Protein Domains
SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZIE4-F1-model_v2 AlphaFold D3ZIE4 1-830 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691171
Promoter ID:EPDNEW_R1696
Type:initiation region
Name:Fyb1_1
Description:FYN binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0255,835,190 - 55,835,250EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563421 AgrOrtholog
BioCyc Gene G2FUF-54153 BioCyc
Ensembl Genes ENSRNOG00000013886 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000018634 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000083646 ENTREZGENE
  ENSRNOP00000083646.1 UniProtKB/TrEMBL
  ENSRNOP00000085597.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018634 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000104137 ENTREZGENE
  ENSRNOT00000104137.1 UniProtKB/TrEMBL
  ENSRNOT00000113006.1 UniProtKB/TrEMBL
InterPro FYB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FYB1/2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FYB_hSH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  hSH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 499537 ENTREZGENE
PANTHER PTHR16830 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16830:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam hSH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
PhenoGen Fyb1 PhenoGen
PROSITE SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A2N2_RAT UniProtKB/TrEMBL
  A0A8I6G9A9_RAT UniProtKB/TrEMBL
  D3ZIE4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-12 Fyb1  FYN binding protein 1  Fyb  FYN binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-02 Fyb  FYN binding protein  Fyb  FYN binding protein (FYB-120/130)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Fyb  FYN binding protein (FYB-120/130)  Fyb  FYN binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Fyb  FYN binding protein  RGD1563421_predicted  similar to FYN binding protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563421_predicted  similar to FYN binding protein (predicted)  LOC499537  similar to FYN binding protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499537  similar to FYN binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL