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Gene: Usp13 (ubiquitin specific peptidase 13) Rattus norvegicus

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Symbol:

Usp13

Name:

ubiquitin specific peptidase 13

RGD ID:

1306044

Description:

Predicted to enable several functions, including BAT3 complex binding activity; peptidase activity; and proteasome binding activity. Predicted to be involved in several processes, including maintenance of unfolded protein; regulation of DNA-templated transcription; and regulation of catabolic process. Predicted to act upstream of or within protein deubiquitination and protein stabilization. Predicted to be active in cytosol and nucleus. Orthologous to human USP13 (ubiquitin specific peptidase 13); INTERACTS WITH (+)-schisandrin B; aconitine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC310306; ubiquitin carboxyl-terminal hydrolase 13; ubiquitin specific protease 13 (isopeptidase T-3); ubiquitin thiolesterase 13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP13 (ubiquitin specific peptidase 13)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Usp13 (ubiquitin specific peptidase 13 (isopeptidase T-3))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usp13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	USP13 (ubiquitin specific peptidase 13)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp13 (ubiquitin specific peptidase 13 (isopeptidase T-3))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp13 (ubiquitin specific peptidase 13)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UBP14	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Usp5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	usp-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp13	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,502,811 - 117,617,049 (+)	NCBI		GRCr8
mRatBN7.2	2	115,576,912 - 115,689,153 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,577,091 - 115,686,222 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	122,183,691 - 122,291,902 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	120,296,325 - 120,404,549 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,998,508 - 115,106,662 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	119,197,153 - 119,317,507 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	119,197,239 - 119,317,500 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	138,848,099 - 138,947,514 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	2	138,961,986 - 138,965,318 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	119,006,687 - 119,116,188 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	118,951,691 - 119,057,605 (+)	NCBI
Celera	2	110,680,308 - 110,788,182 (+)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp13	Rat	Currarino syndrome		ISO	RGD:1314436	8554872	ClinVar Annotator: match by term: Currarino triad	ClinVar	PMID:21681106\|PMID:27549440
Usp13	Rat	syndromic microphthalmia 3		ISO	RGD:1314436	8554872	ClinVar Annotator: match by term: Anophthalmia/microphthalmia-esophageal atresia syndrome	ClinVar	PMID:16543359

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp13	Rat	Arsenic Poisoning		ISO	RGD:1314436	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:16835338
Usp13	Rat	skin disease		ISO	RGD:1314436	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:16835338

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp13	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of USP13 mRNA]	CTD	PMID:31150632
Usp13	Rat	(-)-epigallocatechin 3-gallate	multiple interactions	ISO	RGD:1314436	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of USP13 mRNA	CTD	PMID:22079256
Usp13	Rat	1,2-dimethylhydrazine	increases expression	ISO	RGD:1552359	6480464	1,2-Dimethylhydrazine results in increased expression of USP13 mRNA	CTD	PMID:22206623
Usp13	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	RGD:1314436	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Usp13	Rat	4,4'-sulfonyldiphenol	increases methylation	ISO	RGD:1314436	6480464	bisphenol S results in increased methylation of USP13 gene	CTD	PMID:31601247
Usp13	Rat	aconitine	increases expression	EXP		6480464	Aconitine results in increased expression of USP13 protein	CTD	PMID:33236894
Usp13	Rat	acrylamide	increases expression	EXP		6480464	Acrylamide results in increased expression of USP13 mRNA	CTD	PMID:28959563
Usp13	Rat	aflatoxin B1	decreases expression	ISO	RGD:1314436	6480464	Aflatoxin B1 results in decreased expression of USP13 mRNA	CTD	PMID:22100608
Usp13	Rat	aflatoxin B1	increases methylation	ISO	RGD:1314436	6480464	Aflatoxin B1 results in increased methylation of USP13 intron	CTD	PMID:30157460
Usp13	Rat	all-trans-retinoic acid	decreases expression	ISO	RGD:1314436	6480464	Tretinoin results in decreased expression of USP13 mRNA	CTD	PMID:15498508\|PMID:33167477
Usp13	Rat	alpha-Zearalanol	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of USP13 mRNA	CTD	PMID:35163327
Usp13	Rat	alpha-Zearalanol	decreases expression	EXP		6480464	Zeranol results in decreased expression of USP13 mRNA	CTD	PMID:35163327
Usp13	Rat	aristolochic acid A	decreases expression	ISO	RGD:1314436	6480464	aristolochic acid I results in decreased expression of USP13 mRNA	CTD	PMID:33212167
Usp13	Rat	arsane	decreases expression	ISO	RGD:1314436	6480464	Arsenic results in decreased expression of USP13 mRNA	CTD	PMID:16835338
Usp13	Rat	arsenic atom	decreases expression	ISO	RGD:1314436	6480464	Arsenic results in decreased expression of USP13 mRNA	CTD	PMID:16835338
Usp13	Rat	benzo[a]pyrene	increases expression	ISO	RGD:1314436	6480464	Benzo(a)pyrene results in increased expression of USP13 mRNA	CTD	PMID:22316170
Usp13	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1552359	6480464	Benzo(a)pyrene results in decreased expression of USP13 mRNA	CTD	PMID:22228805
Usp13	Rat	benzo[a]pyrene	multiple interactions	ISO	RGD:1552359	6480464	AHR protein affects the reaction [Benzo(a)pyrene affects the expression of USP13 mRNA]	CTD	PMID:22228805
Usp13	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1314436	6480464	Benzo(a)pyrene results in decreased expression of USP13 mRNA	CTD	PMID:20064835
Usp13	Rat	benzo[e]pyrene	decreases methylation	ISO	RGD:1314436	6480464	benzo(e)pyrene results in decreased methylation of USP13 intron	CTD	PMID:30157460
Usp13	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of USP13 mRNA	CTD	PMID:34947998
Usp13	Rat	bisphenol F	multiple interactions	ISO	RGD:1314436	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Usp13	Rat	butanal	decreases expression	ISO	RGD:1314436	6480464	butyraldehyde results in decreased expression of USP13 mRNA	CTD	PMID:26079696
Usp13	Rat	cadmium atom	multiple interactions	ISO	RGD:1314436	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of USP13 more ...	CTD	PMID:35301059
Usp13	Rat	cadmium dichloride	multiple interactions	ISO	RGD:1314436	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of USP13 more ...	CTD	PMID:35301059
Usp13	Rat	carbamazepine	affects expression	ISO	RGD:1314436	6480464	Carbamazepine affects the expression of USP13 mRNA	CTD	PMID:25979313
Usp13	Rat	CGP 52608	multiple interactions	ISO	RGD:1314436	6480464	CGP 52608 promotes the reaction [RORA protein binds to USP13 gene]	CTD	PMID:28238834
Usp13	Rat	cobalt dichloride	decreases expression	ISO	RGD:1314436	6480464	cobaltous chloride results in decreased expression of USP13 mRNA	CTD	PMID:19320972
Usp13	Rat	copper atom	multiple interactions	ISO	RGD:1314436	6480464	[NSC 689534 binds to Copper] which results in decreased expression of USP13 mRNA	CTD	PMID:20971185
Usp13	Rat	copper(0)	multiple interactions	ISO	RGD:1314436	6480464	[NSC 689534 binds to Copper] which results in decreased expression of USP13 mRNA	CTD	PMID:20971185
Usp13	Rat	copper(II) sulfate	decreases expression	ISO	RGD:1314436	6480464	Copper Sulfate results in decreased expression of USP13 mRNA	CTD	PMID:19549813
Usp13	Rat	corosolic acid	increases expression	ISO	RGD:1314436	6480464	corosolic acid results in increased expression of USP13 mRNA	CTD	PMID:37939859
Usp13	Rat	DDE	increases expression	ISO	RGD:1314436	6480464	Dichlorodiphenyl Dichloroethylene results in increased expression of USP13 mRNA	CTD	PMID:38568856
Usp13	Rat	decabromodiphenyl ether	increases expression	EXP		6480464	decabromobiphenyl ether results in increased expression of USP13 mRNA	CTD	PMID:23914054
Usp13	Rat	dexamethasone	multiple interactions	ISO	RGD:1314436	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Usp13	Rat	diuron	decreases expression	EXP		6480464	Diuron results in decreased expression of USP13 mRNA	CTD	PMID:25152437
Usp13	Rat	dorsomorphin	multiple interactions	ISO	RGD:1314436	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Usp13	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of USP13 mRNA	CTD	PMID:29391264
Usp13	Rat	formaldehyde	decreases expression	ISO	RGD:1314436	6480464	Formaldehyde results in decreased expression of USP13 mRNA	CTD	PMID:23649840
Usp13	Rat	FR900359	increases phosphorylation	ISO	RGD:1314436	6480464	FR900359 results in increased phosphorylation of USP13 protein	CTD	PMID:37730182
Usp13	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of USP13 mRNA	CTD	PMID:33387578
Usp13	Rat	glyphosate	decreases expression	ISO	RGD:1552359	6480464	Glyphosate results in decreased expression of USP13 mRNA	CTD	PMID:35489704
Usp13	Rat	indometacin	multiple interactions	ISO	RGD:1314436	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Usp13	Rat	isobutanol	multiple interactions	ISO	RGD:1314436	6480464	[[Gasoline co-treated with isobutyl alcohol] results in increased abundance of [Particulate Matter co-treated with Polycyclic more ...	CTD	PMID:29432896
Usp13	Rat	lead diacetate	multiple interactions	ISO	RGD:1314436	6480464	[lead acetate co-treated with zinc protoporphyrin] results in increased expression of USP13 mRNA	CTD	PMID:22839698
Usp13	Rat	maneb	multiple interactions	ISO	RGD:1552359	6480464	[Maneb co-treated with Paraquat] results in decreased expression of USP13 mRNA	CTD	PMID:36117858
Usp13	Rat	methapyrilene	decreases methylation	ISO	RGD:1314436	6480464	Methapyrilene results in decreased methylation of USP13 intron	CTD	PMID:30157460
Usp13	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of USP13 gene	CTD	PMID:35440735
Usp13	Rat	nickel atom	decreases expression	ISO	RGD:1314436	6480464	Nickel results in decreased expression of USP13 mRNA	CTD	PMID:25583101
Usp13	Rat	nickel sulfate	decreases expression	ISO	RGD:1314436	6480464	nickel sulfate results in decreased expression of USP13 mRNA	CTD	PMID:16780908
Usp13	Rat	paraquat	multiple interactions	ISO	RGD:1552359	6480464	[Maneb co-treated with Paraquat] results in decreased expression of USP13 mRNA	CTD	PMID:36117858
Usp13	Rat	perfluorooctanoic acid	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of USP13 mRNA	CTD	PMID:35163327
Usp13	Rat	phenylmercury acetate	decreases expression	ISO	RGD:1314436	6480464	Phenylmercuric Acetate results in decreased expression of USP13 mRNA	CTD	PMID:26272509
Usp13	Rat	phenylmercury acetate	multiple interactions	ISO	RGD:1314436	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Usp13	Rat	pioglitazone	multiple interactions	ISO	RGD:1552359	6480464	[N-nitroso-tris-chloroethylurea co-treated with pioglitazone] results in decreased expression of USP13 mRNA	CTD	PMID:27935865
Usp13	Rat	pirinixic acid	multiple interactions	ISO	RGD:1314436	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in more ...	CTD	PMID:19710929
Usp13	Rat	potassium chromate	multiple interactions	ISO	RGD:1314436	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of USP13 mRNA	CTD	PMID:22079256
Usp13	Rat	potassium chromate	decreases expression	ISO	RGD:1314436	6480464	potassium chromate(VI) results in decreased expression of USP13 mRNA	CTD	PMID:22079256
Usp13	Rat	quercetin	decreases expression	ISO	RGD:1314436	6480464	Quercetin results in decreased expression of USP13 mRNA	CTD	PMID:21632981
Usp13	Rat	raloxifene	decreases expression	ISO	RGD:1552359	6480464	Raloxifene Hydrochloride results in decreased expression of USP13 mRNA	CTD	PMID:33269387
Usp13	Rat	SB 431542	multiple interactions	ISO	RGD:1314436	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Usp13	Rat	sodium arsenite	decreases expression	ISO	RGD:1314436	6480464	sodium arsenite results in decreased expression of USP13 mRNA	CTD	PMID:38568856
Usp13	Rat	tamibarotene	decreases expression	ISO	RGD:1314436	6480464	tamibarotene results in decreased expression of USP13 mRNA	CTD	PMID:15498508
Usp13	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of USP13 mRNA	CTD	PMID:31150632
Usp13	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of USP13 mRNA]	CTD	PMID:31150632
Usp13	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of USP13 mRNA	CTD	PMID:34492290
Usp13	Rat	titanium dioxide	decreases methylation	ISO	RGD:1552359	6480464	titanium dioxide results in decreased methylation of USP13 gene	CTD	PMID:35295148
Usp13	Rat	trichloroethene	increases methylation	EXP		6480464	Trichloroethylene results in increased methylation of USP13 gene	CTD	PMID:27618143
Usp13	Rat	trichostatin A	affects expression	ISO	RGD:1314436	6480464	trichostatin A affects the expression of USP13 mRNA	CTD	PMID:28542535
Usp13	Rat	triphenyl phosphate	affects expression	ISO	RGD:1314436	6480464	triphenyl phosphate affects the expression of USP13 mRNA	CTD	PMID:37042841
Usp13	Rat	tris(2-butoxyethyl) phosphate	affects expression	ISO	RGD:1314436	6480464	tris(2-butoxyethyl) phosphate affects the expression of USP13 mRNA	CTD	PMID:29024780
Usp13	Rat	valproic acid	affects expression	ISO	RGD:1314436	6480464	Valproic Acid affects the expression of USP13 mRNA	CTD	PMID:25979313
Usp13	Rat	valproic acid	decreases expression	ISO	RGD:1314436	6480464	Valproic Acid results in decreased expression of USP13 mRNA	CTD	PMID:23179753\|PMID:28001369
Usp13	Rat	zinc protoporphyrin	multiple interactions	ISO	RGD:1314436	6480464	[lead acetate co-treated with zinc protoporphyrin] results in increased expression of USP13 mRNA	CTD	PMID:22839698
Usp13	Rat	zoledronic acid	decreases expression	ISO	RGD:1314436	6480464	zoledronic acid results in decreased expression of USP13 mRNA	CTD	PMID:24714768

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp13	Rat	autophagy	involved_in	IEA	UniProtKB-KW:KW-0072	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp13	Rat	cell population proliferation	involved_in	ISO	RGD:1314436	1624291	PMID:21811243	RGD	PMID:21811243
Usp13	Rat	maintenance of unfolded protein	involved_in	ISO	RGD:1314436	1624291	PMID:24424410	RGD	PMID:24424410
Usp13	Rat	positive regulation of ERAD pathway	involved_in	ISO	RGD:1314436	1624291	PMID:24424410	RGD	PMID:24424410
Usp13	Rat	protein deubiquitination	involved_in	IEA	InterPro:IPR001394\|InterPro:IPR016652	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp13	Rat	protein K29-linked deubiquitination	acts_upstream_of_or_within	ISO	RGD:1314436	1624291	PMID:26280536	RGD	PMID:26280536
Usp13	Rat	protein K6-linked deubiquitination	acts_upstream_of_or_within	ISO	RGD:1314436	1624291	PMID:26280536	RGD	PMID:26280536
Usp13	Rat	protein K63-linked deubiquitination	involved_in	ISO	RGD:1314436	1624291	PMID:22216260	RGD	PMID:22216260
Usp13	Rat	protein K63-linked deubiquitination	acts_upstream_of_or_within	ISO	RGD:1314436	1624291	PMID:26280536	RGD	PMID:26280536
Usp13	Rat	protein stabilization	involved_in	ISO	RGD:1314436	1624291	PMID:21659512	RGD	PMID:21659512
Usp13	Rat	protein stabilization	acts_upstream_of_or_within	ISO	RGD:1314436	1624291	PMID:26280536	RGD	PMID:26280536
Usp13	Rat	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp13	Rat	regulation of autophagy	involved_in	ISO	RGD:1314436	1624291	PMID:21962518	RGD	PMID:21962518
Usp13	Rat	regulation of DNA-templated transcription	involved_in	ISO	RGD:1314436	1624291	PMID:21811243	RGD	PMID:21811243
Usp13	Rat	regulation of protein stability	involved_in	IBA	FB:FBgn0016756\|FB:FBgn0039214\|MGI:1888998\|MGI:1919594\|MGI:2182061\|PANTHER:PTN002541993\|RGD:1306915\|UniProtKB:Q92995\|UniProtKB:Q93008\|UniProtKB:Q93009\|UniProtKB:Q96RU2\|UniProtKB:Q9P275	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp13	Rat	cytosol	is_active_in	IBA	FB:FBgn0016756\|FB:FBgn0030366\|PANTHER:PTN002541993\|SGD:S000004920\|TAIR:locus:505006491\|UniProtKB:Q14694\|UniProtKB:Q86UV5\|UniProtKB:Q93008\|UniProtKB:Q93009\|UniProtKB:Q9BXU7\|UniProtKB:Q9UHP3\|UniProtKB:Q9UMW8	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Usp13	Rat	nucleus	is_active_in	IBA	FB:FBgn0016756\|FB:FBgn0030366\|FB:FBgn0039214\|FB:FBgn0260936\|MGI:2182061\|PANTHER:PTN002541993\|PomBase:SPBC713.02c\|PomBase:SPCC1682.12c\|SGD:S000005130\|TAIR:locus:2020412\|TAIR:locus:2060395\|TAIR:locus:2081501\|TAIR:locus:2090985\|TAIR:locus:2140074\|TAIR:locus:2144118\|TAIR:locus:2174403\|UniProtKB:O75317\|UniProtKB:O94782\|UniProtKB:Q0WX57\|UniProtKB:Q14694\|UniProtKB:Q582C5\|UniProtKB:Q6QN14\|UniProtKB:Q6R6M4\|UniProtKB:Q86T82\|UniProtKB:Q86UV5\|UniProtKB:Q93009\|UniProtKB:Q96K76\|UniProtKB:Q96RU2\|UniProtKB:Q9BXU7\|UniProtKB:Q9P275\|UniProtKB:Q9UMW8\|WB:WBGene00010406	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp13	Rat	BAT3 complex binding	enables	ISO	RGD:1314436	1624291	PMID:24424410	RGD	PMID:24424410
Usp13	Rat	cysteine-type deubiquitinase activity	enables	ISO	RGD:1314436	1624291	PMID:21811243, PMID:21962518, PMID:22216260, PMID:26280536	RGD	PMID:21811243\|PMID:21962518\|PMID:22216260\|PMID:26280536
Usp13	Rat	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR001394\|InterPro:IPR016652\|InterPro:IPR018200	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp13	Rat	cysteine-type deubiquitinase activity	enables	IEA	UniRule:UR000859761\|UniRule:UR000880756	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp13	Rat	cysteine-type deubiquitinase activity	enables	IEA	EC:3.4.19.12	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Usp13	Rat	cysteine-type deubiquitinase activity	enables	IBA	FB:FBgn0005632\|FB:FBgn0016756\|FB:FBgn0030366\|FB:FBgn0033738\|FB:FBgn0260936\|MGI:107697\|MGI:107698\|MGI:107699\|MGI:1924050\|MGI:2140991\|MGI:2182061\|MGI:3051372\|MGI:3051498\|MGI:894681\|PANTHER:PTN002541993\|PomBase:SPAC13A11.04c\|PomBase:SPBP8B7.21\|RGD:1306915\|SGD:S000000163\|SGD:S000000262\|SGD:S000000953\|SGD:S000001418\|SGD:S000002280\|SGD:S000004920\|SGD:S000005130\|SGD:S000005650\|TAIR:locus:2010622\|TAIR:locus:2020412\|TAIR:locus:2060395\|TAIR:locus:2081501\|TAIR:locus:2121959\|TAIR:locus:2122447\|TAIR:locus:2140074\|TAIR:locus:2144118\|UniProtKB:O00507\|UniProtKB:O75317\|UniProtKB:O94782\|UniProtKB:P62068\|UniProtKB:Q0WX57\|UniProtKB:Q14694\|UniProtKB:Q6R6M4\|UniProtKB:Q70CQ2\|UniProtKB:Q70CQ3\|UniProtKB:Q86T82\|UniProtKB:Q8NB14\|UniProtKB:Q92995\|UniProtKB:Q93008\|UniProtKB:Q93009\|UniProtKB:Q96K76\|UniProtKB:Q96RU2\|UniProtKB:Q96V54\|UniProtKB:Q9H9J4\|UniProtKB:Q9P275\|UniProtKB:Q9P2H5\|UniProtKB:Q9UHP3\|WB:WBGene00010406\|WB:WBGene00011216\|ZFIN:ZDB-GENE-060526-335\|dictyBase:DDB_G0291239	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Usp13	Rat	cysteine-type endopeptidase activity	enables	ISO	RGD:1314436	1624291	PMID:21811243	RGD	PMID:21811243
Usp13	Rat	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp13	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp13	Rat	K48-linked deubiquitinase activity	enables	ISO	RGD:1314436	1624291	PMID:24424410	RGD	PMID:24424410
Usp13	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp13	Rat	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp13	Rat	proteasome binding	enables	ISO	RGD:1314436	1624291	PMID:24424410	RGD	PMID:24424410
Usp13	Rat	protein binding	enables	ISO	RGD:1314436	1624291	UniProtKB:O75030\|UniProtKB:P0DTD1-PRO_0000449630\|UniProtKB:P54252\|UniProtKB:Q13148\|UniProtKB:Q14457\|UniProtKB:Q15038\|UniProtKB:Q969Q1\|UniProtKB:Q9BYV6 PMID:21811243, PMID:21962518, PMID:31391242, PMID:32296183, PMID:32353859, PMID:32814053, PMID:33060197, PMID:33707416	RGD	PMID:21811243\|PMID:21962518\|PMID:31391242\|PMID:32296183\|PMID:32353859\|PMID:32814053\|PMID:33060197\|PMID:33707416
Usp13	Rat	protein-folding chaperone binding	enables	ISO	RGD:1314436	1624291	UniProtKB:P46379 PMID:24424410	RGD	PMID:24424410
Usp13	Rat	ubiquitin binding	enables	ISO	RGD:1314436	1624291	PMID:21659512, PMID:21811243, PMID:22216260	RGD	PMID:21659512\|PMID:21811243\|PMID:22216260
Usp13	Rat	ubiquitin protein ligase binding	enables	ISO	RGD:1314436	1624291	UniProtKB:O43255 PMID:21659512	RGD	PMID:21659512
Usp13	Rat	ubiquitin-like protein ligase binding	enables	ISO	RGD:1314436	1624291	UniProtKB:Q9UKV5 PMID:24424410	RGD	PMID:24424410
Usp13	Rat	zinc ion binding	enables	IEA	UniRule:UR000859761	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp13	Rat	zinc ion binding	enables	IEA	InterPro:IPR001607	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp13	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:21659512	PMID:21811243	PMID:21962518	PMID:22216260	PMID:22871113	PMID:24424410	PMID:26280536	PMID:36916102

Usp13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,502,811 - 117,617,049 (+)	NCBI		GRCr8
mRatBN7.2	2	115,576,912 - 115,689,153 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,577,091 - 115,686,222 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	122,183,691 - 122,291,902 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	120,296,325 - 120,404,549 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,998,508 - 115,106,662 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	119,197,153 - 119,317,507 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	119,197,239 - 119,317,500 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	138,848,099 - 138,947,514 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	2	138,961,986 - 138,965,318 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	119,006,687 - 119,116,188 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	118,951,691 - 119,057,605 (+)	NCBI
Celera	2	110,680,308 - 110,788,182 (+)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

USP13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	179,653,040 - 179,789,401 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	179,653,032 - 179,804,366 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	179,370,828 - 179,507,189 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	180,853,635 - 180,984,675 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	180,853,642 - 180,984,683	NCBI
Celera	3	177,801,905 - 177,938,115 (+)	NCBI		Celera
Cytogenetic Map	3	q26.33	NCBI
HuRef	3	176,774,718 - 176,910,711 (+)	NCBI		HuRef
CHM1_1	3	179,334,034 - 179,470,263 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	182,456,880 - 182,592,926 (+)	NCBI		T2T-CHM13v2.0

Usp13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	32,870,432 - 32,992,224 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	32,871,695 - 32,992,220 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	32,816,283 - 32,938,075 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	32,817,546 - 32,938,071 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	32,716,548 - 32,834,179 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	33,009,175 - 33,126,806 (+)	NCBI		MGSCv36	mm8
Celera	3	32,725,174 - 32,842,630 (+)	NCBI		Celera
Cytogenetic Map	3	A3	NCBI
cM Map	3	15.88	NCBI

Usp13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	8,835,549 - 8,919,933 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	8,835,858 - 8,919,837 (+)	NCBI	ChiLan1.0	ChiLan1.0

USP13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	177,521,579 - 177,654,597 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	177,526,444 - 177,656,313 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	176,685,541 - 176,818,360 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	184,856,295 - 184,988,305 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	184,855,388 - 184,983,158 (+)	Ensembl	panpan1.1		panPan2

USP13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	13,059,099 - 13,175,980 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	13,059,092 - 13,171,234 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	17,200,915 - 17,303,172 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	12,957,093 - 13,074,094 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	12,957,085 - 13,069,581 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	13,008,227 - 13,125,027 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	12,990,863 - 13,107,688 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	13,230,757 - 13,347,935 (+)	NCBI		UU_Cfam_GSD_1.0

Usp13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	109,698,615 - 109,804,274 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936566	3,416,389 - 3,522,133 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936566	3,416,468 - 3,522,127 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	117,700,119 - 117,826,944 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	117,700,080 - 117,826,951 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	126,874,063 - 126,917,846 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	9,619,065 - 9,753,490 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	9,624,300 - 9,753,466 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	18,478,400 - 18,623,806 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	57,384,884 - 57,495,765 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	57,384,878 - 57,495,761 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Usp13
778 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	591
Count of miRNA genes:	288
Interacting mature miRNAs:	364
Transcripts:	ENSRNOT00000048030
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	102803808	147803808	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1598865	Bp296	Blood pressure QTL 296	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	81018907	126018907	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1578772	Stresp14	Stress response QTL 14	5	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	2	82345893	130923501	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	38573329	122609194	Rat
1598862	Glom9	Glomerulus QTL 9	3.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	2	92337601	137337601	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	76539322	150540526	Rat
1598863	Cm65	Cardiac mass QTL 65	2.3		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	92337601	137337601	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
2300165	Bmd49	Bone mineral density QTL 49	4.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	2	88862519	133862519	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
2300170	Bmd45	Bone mineral density QTL 45	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	2	88862519	133862519	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	143657569	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	104559726	149559726	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26917817	136917119	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	78665616	143657569	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
2300185	Bmd46	Bone mineral density QTL 46	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	88862519	133862519	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
61392	Bp6	Blood pressure QTL 6	7		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	80270434	125270434	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	112103657	148076632	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
7207808	Bmd89	Bone mineral density QTL 89	4.1		femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	2	88862519	133862519	Rat
1558648	Smcn1	Smooth muscle cell number QTL 1		0.039	blood vessel smooth muscle cell quantity (VT:0010525)	aorta smooth muscle cell count per unit vessel length (CMO:0001646)	2	59134147	127460910	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	114654253	159654253	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	59324377	141596857	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	127469484	Rat

RH143158

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	115,685,235 - 115,685,398 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	119,314,027 - 119,314,189	NCBI	Rnor6.0
Rnor_5.0	2	138,964,332 - 138,964,494	UniSTS	Rnor5.0
RGSC_v3.4	2	119,115,202 - 119,115,364	UniSTS	RGSC3.4
Celera	2	110,787,196 - 110,787,358	UniSTS
RH 3.4 Map	2	682.6	UniSTS
Cytogenetic Map	2	q25	UniSTS

BE110244

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	115,686,534 - 115,686,693 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	119,315,326 - 119,315,484	NCBI	Rnor6.0
Rnor_5.0	2	138,965,631 - 138,965,789	UniSTS	Rnor5.0
RGSC_v3.4	2	119,116,501 - 119,116,659	UniSTS	RGSC3.4
Celera	2	110,788,495 - 110,788,653	UniSTS
RH 3.4 Map	2	682.6	UniSTS
Cytogenetic Map	2	q25	UniSTS

RH138856

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	117,611,286 - 117,612,183 (+)	Marker Load Pipeline
mRatBN7.2	2	115,682,953 - 115,683,850 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	119,311,745 - 119,312,641	NCBI	Rnor6.0
Rnor_5.0	2	138,962,050 - 138,962,946	UniSTS	Rnor5.0
Celera	2	110,784,915 - 110,785,811	UniSTS
RH 3.4 Map	2	685.6	UniSTS
Cytogenetic Map	2	q25	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001107665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GU459226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000048030 ⟹ ENSRNOP00000039985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	115,577,091 - 115,686,222 (+)	Ensembl
Rnor_6.0 Ensembl	2	119,197,239 - 119,317,500 (+)	Ensembl

RefSeq Acc Id:

NM_001107665 ⟹ NP_001101135

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,505,443 - 117,614,555 (+)	NCBI
mRatBN7.2	2	115,577,091 - 115,686,222 (+)	NCBI
Rnor_6.0	2	119,197,253 - 119,315,013 (+)	NCBI
Rnor_5.0	2	138,848,099 - 138,947,514 (+)	NCBI
Rnor_5.0	2	138,961,986 - 138,965,318 (+)	NCBI
RGSC_v3.4	2	119,006,687 - 119,116,188 (+)	RGD
Celera	2	110,680,308 - 110,788,182 (+)	RGD

Sequence:

show sequence

CGGCCGCTACGTCCAGGTCCTGCTCTCCCACTGCGCCGCGTTCCTCCCCAGGCCCGCTGCGCTCAGCGGCCATGCAGCGCCGGGGCGCCCTGTTCAGCGTGCCGGGTGGCGGCGGGAAGATGGCTGCA
GGGGACCTGGGTGAGCTGCTGGTGCCTCACATGCCCACGATCCGCGTGCCTAGGTCAGGGGACCGCGTCTACAAAAACGAGTGCGCCTTCTCCTACGACTCTCCGAACTCTGAAGGTGGACTCTATGT
ATGCATGAATACATTTTTGGCTTTTGGAAGGGAACACGTTGAAAGACATTTTCGGAAAACTGGACAGAGCGTGTACATGCACCTGAAGAGGCACATGCGAGAGAAGGTAAGAGGAGCTTCTGGTGGAG
CTTTACCCAAAAGGAGGAATTCTAAACTATTTTTAGATCTAGATATGGATGACGATTTAAATAGTGACGATTACGAATATGAAGACGAAGCCAAACTTGTTATATTCCCAGACCACTATGAAATAGCC
CTTCCTAACATTGAGGAGTTACCAGCCCTGGTAACAATTGCTTGCGATGCAGTGCTCAGCTCAAAGTCCCCGTATAGGAAGCAGGATCCAGACACGTGGGAAAACGAACTGCCAGTATCGAAGTACGC
CAACAACCTCGTGCAACTGGACAACGGGGTCAGGATTCCTCCGAGTGGCTGGAAGTGTGCCCGATGTGACCTGCGGGAGAACCTCTGGTTGAATCTGACTGACGGCTCTGTTCTGTGTGGGAAGTGGT
TTTTTGACAGCTCGGGGGGCAATGGCCATGCGCTGGAGCATTACAGAGACATGGGCTATCCTCTGGCCGTGAAGCTGGGCACCATCACGCCTGATGGAGCAGATGTTTATTCTTTTCAAGAAGAGGGG
CCTGTTTCGGATCCTCATTTGGCCAAACACTTAGCACATTTTGGGATTGACATGCTCCACACACAAGGGACAGAGAATGGGTTCCGGGACAATGACATCAAGCTGAGAGTCAGCGAGTGGGAAGTGAT
CCAGGAGTCAGGAACTAAGCTGAAGCCAATGTATGGCCCAGGGTACACGGGCCTGAAGAACCTGGGCAACAGTTGCTACCTCAGTTCTGTCATGCAGGCCATCTTCAGCATCCCAGAGTTCCAGAGAG
CGTATGTAGGAAACCTCCCAAGGATATTTGACTACTCACCATTAGATCCAACGCAGGACTTCAACACACAGATGACTAAGTTGGGACATGGCCTCCTCTCTGGCCAGTACTCGAAGCCTCCAGTGAAA
TCTGAGCTCATTGAACAGGTGATGAAGGAGGAGCACAAGCCTCAGCAGAATGGGATCTCTCCACGAATGTTCAAGGCCTTTGTCAGCAAGAGTCACCCAGAATTTTCCTCCAATAGACAGCAGGATGC
CCAGGAGTTTTTCTTGCATTTGGTTAATCTGGTAGAGAGGAATCGCATTGGCTCAGAAAACCCAAGTGATGTTTTCCGGTTTTTGGTGGAAGAGCGAATTCAATGCTGTCAGACCAGAAAGGTCCGCT
ACACAGAGAGGGTGGACTACCTTATGCAGTTACCAGTGGCAATGGAGGCAGCAACCAACAAAGATGAGCTGATTGCCTATGAACTAATGCGGAGGGAAGCAGAAACCAACAGGAGACCCCTTCCAGAG
CTGGTACGAGCCAAGATCCCATTCAGTGCCTGTCTTCAGGCCTTTGCTGAACCAGACAATGTGGATGATTTCTGGAGCAGTGCTCTGCAGGCCAAGTCTGCAGGGGTCAAAACATCTCGCTTTGCCTC
ATTCCCTGAATACTTGGTAGTGCAGATAAAGAAGTTCACTTTTGGTCTTGACTGGGTTCCCCGAAAATTTGATGTTTCTATTGATATGCCAGATCTACTAGATATCAGCCATCTCAGAGCCAGGGGCT
TGCAGCCAGGGGAAGAGGAGCTTCCTGACATCAGCCCCCCCATAGTCATTCCTGATGACTCAAAAGACCGCTTGATGAACCAGCTGATAGACCCCTCAGACATTGATGAGTCCTCGGTGATGCAACTG
GCTGAGATGGGCTTCCCTTTGGAGGCCTGCAGGAAGGCTGTGTACTTCACGGGGAATACTGGAGCTGAGGTGGCCTTCAACTGGATTATCGTGCACATGGAAGAGCCTGATTTTGCTGAACCACTGGC
CATACCTGGGTATGGAGGGGCTGGGGCCTCTGCCTTTGGTGCTACTGGACTGGACAACCAACCTCCTGAGGAAATCGTAGCTATTATCACTGCCATGGGATTCCAGCGCAGTCAGGCGGTACAGGCTC
TACAAGCCACGAACCATAACCTGGAAAGAGCACTGGACTGGATCTTCAGCCACCCTGAGTTTGAAGAGGACAGTGACTTTGTCATCGAGATGGAGAACAATGCGAATGCAAACATCATGTCTGAGGCC
AAGCCAGAGGGGCCCAGAGTCAAGGATGGGTCTGGAATGTATGAGTTGTTTGCGTTCATCAGTCACATGGGAACATCTACGATGAGTGGCCATTATGTTTGCCATATCAAGAAGGAGGGACGATGGGT
GATCTACAATGACCACAAAGTTTGTGCCTCAGAAAGGCCCCCCAAAGACCTGGGATATATGTACTTTTACCGCAGGATACCAAGCTAAACCTCACAAGAATTGGCGAGAAGAAGCCATACACCTTTAT
AATTTGCCAAAAAAGAAAAAGAAAAAAAAAAAGAAAAAGGAAAAATAAAGGAAAAAAGTTGGGACAGCCGGATGCGGAGGACTACATGGGTATTTACTGCTCCTTTCAAGAGCGTGGTCACTCGACGC
CTTCTGGAGAAGAACTGGGAAGAAAATTCTGTTGGCGGTGATATTCTGTCCTGGGAGATTTTGTAACTCTTCAGGGAGAGAGTGACGGAAGCAAAGGCATTGTCCACCGGCCCCTCAGAGAGGCACTG
TCTTCCCCTCTCTTCTACTTGGGGGGGTCACCAGTGAGGGCCCCCCACAGTGAGAAAAATGCCCACTTTTAAAATTTTTCCACATAGGAAATCAAAACCTGGACTGGCTTTTATTGGTGGCACTTTGT
TTTCATTTCCCACAGTAAGTTCTGTGCACACTAGGACATCTGCAGTGAGAGCTATTTTTAATTTAAATCACGTCAAACTTTATATTACACTGTATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTTTGTAGTCTGCTGTACGTCTGATGGATTGGTGTTCAAAGGCCAAATAGCTGCTTTTAG
GCATATTTGGAAAAGGCAGGCAAACATCTTTAAAAATTATAACTCAGGAACAATTGTTAAAAGTGAGTTCCCCACTTGGATTTTAAAGTACAGAGAGCTGAGCTGTGGCCCCTTAAGTGCTGTCTGGC
ATTCATGAGGGTCTGTGTCGTTTGACCTTGATGCCAGGTGCCTAAGTCTTGTCACTGTGCTTTGCCAAGGGCAGATGGGATCTCTTCCTCAGTAGGGCATTCCCTCAAAGCTTTGTGTTTAGTTTTAG
TTAAATAACTGGCCTCCCAAGCTCCTGCTTACTCCCTGGGATCACGTTAGATGCCTGTGGCTTGTCTGATTTTTTTGGTCCCTGAACTTCCTTGTGTTTTCACATCTCTGCTTCTCTGGGGCCAGCTT
CACCTCTGCCCTCACTGCCTATCTGCTGTGGCCCATGGTACAACCTGGGGCGCTTTAAGGATGCAAGCTGCAGAAACACCTCTGTTGCAGCTGCAAAGCCAGGGCCTTCCTTCCTTGTCATTTCCGGG
TCCTAGCTGTGGTCTGAGATCAGAGCAGAGTTGTGGATGTGCAGTGGAGAGGAACCAGAGCTCTCCATAATTTTCTTACTACTTCTCATCAAATTCCAGCCTCTGGAGTTTCTAGTTCAGGTTATTGA
TCAGATGGGAAAGGATTTATTGCTGTCTGCTTGATGTGTGCTTGCTTGATTGATCTTTGCAGGAACTGCAGAAAAAAATGATGAAATAGAAACGGAATGGGCTGAGTAAGCAGAGGCATCGGGTTGGG
ATGGGATGAGTCTGAACAGTCAGAGTTCAAACCCTGGGGCCCTGTCTCAAGGAAGACCCCGTGTAAGTCCGGGCTGTGGGGCAGGGCCACGGGCCTGGGTACTTCTGGGTGCTGTCTCAGTTGGCTAT
GGGCCAGTCCTTCCATCTGTGCCTCATTCTCCTCATCCGCACGGTGGTCAGGTGACACCTCCCTCTTTCTAGCAGGCTTTGATTAATTCTGAAGAACCTCCAATGAACAGAAGGTGGAACGTGGTAGG
CCCCACTGGAGAGTGCTCCTGTCTTCTTGACTTACCTGTTGCGTTTTCCACTTGGGAATAAATGACATCACAGGAGGGAGCTCATGATTCTCTCTGACACTGTCCCACTGAGGCACCTTTGAGGCTTG
GCTCAGAGATCCTAAGTCTCTGTCCTGTGTGTCCCTGACCAGCGCCCCTACCCCGAAGTGGAAATTCACACACCAAGCAGCCTTACAAATGTAGTCCCTATAGGGCCACATATGGTAGGATAATGACT
GACCTTCAGTGGCTGGTTTGCAGTGTTACAAAGCAAAGGCCTTTCACGTGGGTAGGGGACTCTCAGGAGGTTTGAATTCAAATGTGGTCAGAGATAGTATATATATTTTGGACAAAATAAGAAGTTTT
TATAAAACTTTTCAAGCTCAACATTGTAAAATCCACATTAAAGATTTTAGGCTATAAACTGTTTAATTTTATTAGGTAGAAGAAGCAAATTAATCCTTCTGATGCCAAGACATACTTCAAGAAAGTGG
ATAATGACTGCCTTTTCCCTGCCTCACAAACACAAGGGCTATTCATGGCAAGGTTTTGTATATGTGCTATTCTTCACTCAGATCAGGAGCTGGACGCACCGGTGTGGGCAGTGCCTTGCTTTCTCGTT
AGAAATGTGCTTGCATGTGTCTCCTGGTATAGGCAAACCAGCTCTCTAGAG

hide sequence

RefSeq Acc Id:

XM_008760924 ⟹ XP_008759146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,502,811 - 117,617,049 (+)	NCBI
mRatBN7.2	2	115,576,912 - 115,689,153 (+)	NCBI
Rnor_6.0	2	119,197,153 - 119,317,507 (+)	NCBI

Sequence:

show sequence

GCCAGCGACTCGCCATTGGATTAAAAATAGCAGCTCCCGCCCGCTGGCCGGTCGGGGCAGGGGC
CGAGTCTCCCCAGCCTGAGCTGATCCTCAGCCCGCGCGGCCGCTACGTCCAGGTCCTGCTCTCCCACTGCGCCGCGTTCCTCCCCAGGCCCGCTGCGCTCAGCGGCCATGCAGCGCCGGGGCGCCCTG
TTCAGCGTGCCGGGTGGCGGCGGGAAGATGGCTGCAGGGGACCTGGGTGAGCTGCTGGTGCCTCACATGCCCACGATCCGCGTGCCTAGGTCAGGGGACCGCGTCTACAAAAACGAGTGCGCCTTCTC
CTACGACTCTCCGAACTCTGAAGGTGGACTCTATGTATGCATGAATACATTTTTGGCTTTTGGAAGGGAACACGTTGAAAGACATTTTCGGAAAACTGGACAGAGCGTGTACATGCACCTGAAGAGGC
ACATGCGAGAGGTAAGAGGAGCTTCTGGTGGAGCTTTACCCAAAAGGAGGAATTCTAAACTATTTTTAGATCTAGATATGGATGACGATTTAAATAGTGACGATTACGAATATGAAGACGAAGCCAAA
CTTGTTATATTCCCAGACCACTATGAAATAGCCCTTCCTAACATTGAGGAGTTACCAGCCCTGGTAACAATTGCTTGCGATGCAGTGCTCAGCTCAAAGTCCCCGTATAGGAAGCAGGATCCAGACAC
GTGGGAAAACGAACTGCCAGTATCGAAGTACGCCAACAACCTCGTGCAACTGGACAACGGGGTCAGGATTCCTCCGAGTGGCTGGAAGTGTGCCCGATGTGACCTGCGGGAGAACCTCTGGTTGAATC
TGACTGACGGCTCTGTTCTGTGTGGGAAGTGGTTTTTTGACAGCTCGGGGGGCAATGGCCATGCGCTGGAGCATTACAGAGACATGGGCTATCCTCTGGCCGTGAAGCTGGGCACCATCACGCCTGAT
GGAGCAGATGTTTATTCTTTTCAAGAAGAGGGGCCTGTTTCGGATCCTCATTTGGCCAAACACTTAGCACATTTTGGGATTGACATGCTCCACACACAAGGGACAGAGAATGGGTTCCGGGACAATGA
CATCAAGCTGAGAGTCAGCGAGTGGGAAGTGATCCAGGAGTCAGGAACTAAGCTGAAGCCAATGTATGGCCCAGGGTACACGGGCCTGAAGAACCTGGGCAACAGTTGCTACCTCAGTTCTGTCATGC
AGGCCATCTTCAGCATCCCAGAGTTCCAGAGAGCGTATGTAGGAAACCTCCCAAGGATATTTGACTACTCACCATTAGATCCAACGCAGGACTTCAACACACAGATGACTAAGTTGGGACATGGCCTC
CTCTCTGGCCAGTACTCGAAGCCTCCAGTGAAATCTGAGCTCATTGAACAGGTGATGAAGGAGGAGCACAAGCCTCAGCAGAATGGGATCTCTCCACGAATGTTCAAGGCCTTTGTCAGCAAGAGTCA
CCCAGAATTTTCCTCCAATAGACAGCAGGATGCCCAGGAGTTTTTCTTGCATTTGGTTAATCTGGTAGAGAGGAATCGCATTGGCTCAGAAAACCCAAGTGATGTTTTCCGGTTTTTGGTGGAAGAGC
GAATTCAATGCTGTCAGACCAGAAAGGTCCGCTACACAGAGAGGGTGGACTACCTTATGCAGTTACCAGTGGCAATGGAGGCAGCAACCAACAAAGATGAGCTGATTGCCTATGAACTAATGCGGAGG
GAAGCAGAAACCAACAGGAGACCCCTTCCAGAGCTGGTACGAGCCAAGATCCCATTCAGTGCCTGTCTTCAGGCCTTTGCTGAACCAGACAATGTGGATGATTTCTGGAGCAGTGCTCTGCAGGCCAA
GTCTGCAGGGGTCAAAACATCTCGCTTTGCCTCATTCCCTGAATACTTGGTAGTGCAGATAAAGAAGTTCACTTTTGGTCTTGACTGGGTTCCCCGAAAATTTGATGTTTCTATTGATATGCCAGATC
TACTAGATATCAGCCATCTCAGAGCCAGGGGCTTGCAGCCAGGGGAAGAGGAGCTTCCTGACATCAGCCCCCCCATAGTCATTCCTGATGACTCAAAAGACCGCTTGATGAACCAGCTGATAGACCCC
TCAGACATTGATGAGTCCTCGGTGATGCAACTGGCTGAGATGGGCTTCCCTTTGGAGGCCTGCAGGAAGGCTGTGTACTTCACGGGGAATACTGGAGCTGAGGTGGCCTTCAACTGGATTATCGTGCA
CATGGAAGAGCCTGATTTTGCTGAACCACTGGCCATACCTGGGTATGGAGGGGCTGGGGCCTCTGCCTTTGGTGCTACTGGACTGGACAACCAACCTCCTGAGGAAATCGTAGCTATTATCACTGCCA
TGGGATTCCAGCGCAGTCAGGCGGTACAGGCTCTACAAGCCACGAACCATAACCTGGAAAGAGCACTGGACTGGATCTTCAGCCACCCTGAGTTTGAAGAGGACAGTGACTTTGTCATCGAGATGGAG
AACAATGCGAATGCAAACATCATGTCTGAGGCCAAGCCAGAGGGGCCCAGAGTCAAGGATGGGTCTGGAATGTATGAGTTGTTTGCGTTCATCAGTCACATGGGAACATCTACGATGAGTGGCCATTA
TGTTTGCCATATCAAGAAGGAGGGACGATGGGTGATCTACAATGACCACAAAGTTTGTGCCTCAGAAAGGCCCCCCAAAGACCTGGGATATATGTACTTTTACCGCAGGATACCAAGCTAAACCTCAC
AAGAATTGGCGAGAAGAAGCCATACACCTTTATAATTTGCCAAAAAAGAAAAAGAAAAAAAAAAAGAAAAAGGAAAAATAAAGGAAAAAAGTTGGGACAGCCGGATGCGGAGGACTACATGGGTATTT
ACTGCTCCTTTCAAGAGCGTGGTCACTCGACGCCTTCTGGAGAAGAACTGGGAAGAAAATTCTGTTGGCGGTGATATTCTGTCCTGGGAGATTTTGTAACTCTTCAGGGAGAGAGTGACGGAAGCAAA
GGCATTGTCCACCGGCCCCTCAGAGAGGCACTGTCTTCCCCTCTCTTCTACTTGGGGGGGTCACCAGTGAGGGCCCCCCACAGTGAGAAAAATGCCCACTTTTAAAATTTTTCCACATAGGAAATCAA
AACCTGGACTGGCTTTTATTGGTGGCACTTTGTTTTCATTTCCCACAGTAAGTTCTGTGCACACTAGGACATCTGCAGTGAGAGCTATTTTTAATTTAAATCACGTCAAACTTTATATTACACTGTAT
GAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTTTGTAGTCTGCTGTACGTCTGATGG
ATTGGTGTTCAAAGGCCAAATAGCTGCTTTTAGGCATATTTGGAAAAGGCAGGCAAACATCTTTAAAAATTATAACTCAGGAACAATTGTTAAAAGTGAGTTCCCCACTTGGATTTTAAAGTACAGAG
AGCTGAGCTGTGGCCCCTTAAGTGCTGTCTGGCATTCATGAGGGTCTGTGTCGTTTGACCTTGATGCCAGGTGCCTAAGTCTTGTCACTGTGCTTTGCCAAGGGCAGATGGGATCTCTTCCTCAGTAG
GGCATTCCCTCAAAGCTTTGTGTTTAGTTTTAGTTAAATAACTGGCCTCCCAAGCTCCTGCTTACTCCCTGGGATCACGTTAGATGCCTGTGGCTTGTCTGATTTTTTTGGTCCCTGAACTTCCTTGT
GTTTTCACATCTCTGCTTCTCTGGGGCCAGCTTCACCTCTGCCCTCACTGCCTATCTGCTGTGGCCCATGGTACAACCTGGGGCGCTTTAAGGATGCAAGCTGCAGAAACACCTCTGTTGCAGCTGCA
AAGCCAGGGCCTTCCTTCCTTGTCATTTCCGGGTCCTAGCTGTGGTCTGAGATCAGAGCAGAGTTGTGGATGTGCAGTGGAGAGGAACCAGAGCTCTCCATAATTTTCTTACTACTTCTCATCAAATT
CCAGCCTCTGGAGTTTCTAGTTCAGATTATTGATCAGATGGGAAAGGATTTATTGCTGTCTGCTTGATGTGTGCTTGTTTGATTGATCTTTGCAGGAACTGCAGAAAAAAAATGATGAAATAGAAACG
GAATGGGCTGAGTAAGCAGAGGCATTGGGTTGGGATGGGATGAGTCTGAACAGTCAGAGTTCAAACCCTGGGGCCCTGTCTCAAGGAAGACCCCGTGTAAGTCCGGGCTGTGGGGCAGGGCCACGGGC
CTGGGTACTTCTGGGTGCTGTCTCAGTTGGCTATGGGCCAGTCCTTCCATCTGTGCCTCATTCTCCTCATCCGCACGGTGGTCAGGTGACACCTCCCTCTTTCTAGCAGGCTTTGATTAATTCTGAAG
AACCTCCAATGAACAGAAGGTGGAACGTGGTAGGCCCCACTGGAGAGTGCTCCTGTCTTCTTGACTTACCTGTTGCGTTTTCCACTTGGGAATAAATGACATCACAGGAGGGAGCTCATGATTCTCTC
TGACACTGTCCCACTGAGGCACCTTTGAGGCTTGGCTCAGAGATCCTAAGTCTCTGTCCTGTGTGTCCCTGACCAGCGCCCCTACCCCGAAGTGGAAATTCACACACCAAGCAGCCTTACAAATGTAG
TCCCTATAGGGCCACATATGGTAGGATAATGACTGACCTTCAGTGGCTGGTTTGCAGTGTTACAAAGCAAAGGCCTTTCACGTGGGTAGGGGACTCTCAGGAGGTTTGAATTCAAATGTGGTCAGAGA
TAGTATATATATTTTGGACAAAATAAGAAGTTTTTATAAAACTTTTCAAGCTCAACATTGTAAAATCCACATTAAAGATTTTAGGCTATAAACTGTTTAATTTTATTAGGTAGAAGAAGCAAATTAAT
CCTTCTGATGCCAAGACATACTTCAAGAAAGTGGATAATGACTGCCTTTTCCCTGCCTCACAAACACAAGGGCTATTCATGGCAAGGTTTTGTATATGTGCTATTCTTCACTCAGATCAGGAGCTGGA
CGCACCGGTGTGGGCAGTGCCTTGCTTTCTCGTTAGAAATGTGCTTGCATGTGTCTCCTGGTATAGGCAAACCAGCTCTCTAGAGTACCAGTGGGATATATCACTTATCTTACGTGTGTAAATGGGAC
GCTTGTGGCCACAACTGGAACAACGTGGGCTGTGTCTGCTGACCCACCTGCTGGGAGTCTTTTTGTGTGAGATGTGGCGTGATTGTGTGGCTCTCTCTCCATGTAGGCATCTGTGTGGAGGACAGAGC
TTTCTTCCTGTAAATATCTTTTGATATCCATTTGTGTAGACTCCCAATATGTCTTTGGAAAATGGATCTGTTTTGTCAGTTGGTCGAAATACCCAAATAACAAGTCAGAAATCAAGCTTGGTATAGGT
TTTCTTTTTCTTCTGAATGAGAAGAATCTGGGAAGAATCATATTTTAATGACATTTTATATCAATGTTCCTTCAGGATTTTGGAATCGATGAGCTTGTTTTCCCAAGCCTACAAGAGAATGTGCCTGC
CATTTCCCCGGCATCCCTTTGTGGTCCCATTACCTCAGCTGAAGACTTACAAGTGTGCTTATGTCCTGACAGCATCTCTGTGTCACATGCCTGAGTCTCACTGCTGCTGGGCCCTTGTCTCTGGACCA
GGAGGTTAGACCAGATAATCTGTGAAGTCTCCTTCTGTCTGGCCACTACATTTTGTGTTTATTTTTCTGTGGTTCTGTCCAGAATCAGACATGAGCTGTGGCGGTCACTCAGGAGTTTCAGTGTTGGA
GTCTGCAGCTATTCTAGCTTGTAGGTTGCTGACATCATTGGTCCACATCCCATTTCTCTTCCTGATCTATTTTCTTTGGTAATCTCACTTCCCCCCAACCCTGAACTCAAAACTTTTCAGTCTATGAG
GTCCTTTGCTACTGCCCCCCACTCCAAACAAAAGCAGCAATGCATGTATGTCATCCTCTTGGAAAAGTCTCAGAATGCCTCTCAGCTCGCTCTGACATGCACAATATTTTAAAATCCTGATTCCATTG
TTGCTAGTCCCATCCTCAGATATGTGCTGCCAAAGCTGTCTGTCCTAGAAAGGGTGTCTTCATCATCATAGATGCCGTGGCTTCTGGATCTCATCACAGATCTTCATAGTCTGTGGGGTTACTAGGAG
ACATGAGCAGAACAGAGGATGGCATTAGATATAATGTGCTTCTGCCTGTCAGGGCAGTGTCTCAGGGGACAGAACAAGGTCTGTGCTGTGAAGCTGGTGGGTGCCACCTACTCGATGCCACCAGGATT
TCCTACTCTCCTAATTTGATTTTCATTGGTGTAATAAAGACGATGAACAAAAACAAGTTGGGAAGGAAAGGGTTTATTTGGTCTTATAAAGTAACACCCCACCAGGAGGGGAAGTCAGGGCAGGAACT
GAAGGCAGGAACTGAGGCAGAGGCCGTGGAGGAGTGCTTCTTACTGGCTTGTTCCCCCCTTCTCTCTTAGCCTGCTTTCCAGGACCACCCACACTGGGCTGGGCCCTCCCTCACCAATCATTAATCAA
GAAAATGTCCTGTAGGCTTACCCACGAGCTGATCTTAAAGGAAGCATTTTCTCAGTTGAGGTTGCCTCTTTCAGATGATCTTAGCTTGAGTCAAATGAACCCAAACAAACAAACACAAGCTAATCAGC
ACAGTCCTCTGTAATTCATCACCCTTATAGTTGGTGGCAGGCTCTGTAGCTCTCTAGCCTGGTGGGACTTGGTCAGTCCATACTGAGGTTGTTCCATATACATAAAACGCACACTAATACTTGGAAAG
CTTCAACAAGCGGAATGACTGTTGCAAATGATGTTGACTGCATGTGATGGTAATTTAATATTAACATTTCCACTGTCATCTGTTCTTAGCATGGCTACTGAGCAATTCAGAAGTGTGCCTAAGGCCCA
GCCATTATTGTTCTGCACTGAGAGGTCGCCAGTGAAATCCCATGAGTGAGACAGGACCCTGCAGAGACTCTGAATCAAAACAACACAGATGGTTTTGCTGGAGTTGAGGGCGCATGAAGCACTGGACA
AGGCCCAGAAACCACAAGAACCACCTTGTAGGTTCTGGGGCTATTTTGCTTAAACACCCCCCCCCCCCACACACACACCCCTTCAGCTGCAAAAGCAGTGTGCCCCCCAGTGGCCTTCTCTTGGCCTT
GCTCCGGTGCTGCCCTGTAGATTAGCAACTGTTTTCCCAGCATCCTCCAGGTGCTGTGGATGTTAGCTGGGGCAGAGGTTTGGGCATACTGCTTTCAATTCAGGCAACATTCTCTTGTGGTCCCTCTC
CCCGTGTCCTGTATTCTGTTCCCAGCTGGGCATGTGGAAAGGCTGTGTGGATCTCAGCTCCTCCGCTTGCACAGAGGCTGAGCCTGACCTGTGCCCGTCTGCTCAGCAGTGTTACTGTTGGTGGCTGG
AAGACTTGGTATTTATTTATTTTGCACTAGTCACAGTTGGTGTGGAAACTACTTCAAGTGTTTGGGAGACTACTTGGCTATAACGGAAAGAGATGGATAATTTATTGCTTTGATAGTTTTAAATTAAA
AGCTATTCTCACAAACTCA

hide sequence


Protein RefSeqs	NP_001101135	(Get FASTA)	NCBI Sequence Viewer
	XP_008759146	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ADM34981	(Get FASTA)	NCBI Sequence Viewer
	EDM01211	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000039985
	ENSRNOP00000039985.4
	ENSRNOP00000108074

RefSeq Acc Id:

NP_001101135 ⟸ NM_001107665

- UniProtKB:

D3ZDI9 (UniProtKB/TrEMBL), A6IHR3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQRRGALFSVPGGGGKMAAGDLGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHMREKVRGASGGALPKRRNSKLFLDLDMDDDLNSDD
YEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVSKYANNLVQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAV
KLGTITPDGADVYSFQEEGPVSDPHLAKHLAHFGIDMLHTQGTENGFRDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQ
MTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDEL
IAYELMRREAETNRRPLPELVRAKIPFSACLQAFAEPDNVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPRKFDVSIDMPDLLDISHLRARGLQPGEEELPDISPPIVIPDDSKDR
LMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAIPGYGGAGASAFGATGLDNQPPEEIVAIITAMGFQRSQAVQALQATNHNLERALDWIFSHPEFEED
SDFVIEMENNANANIMSEAKPEGPRVKDGSGMYELFAFISHMGTSTMSGHYVCHIKKEGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS

hide sequence

RefSeq Acc Id:

XP_008759146 ⟸ XM_008760924

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQRRGALFSVPGGGGKMAAGDLGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHMREVRGASGGALPKRRNSKLFLDLDMDDDLNSDDY
EYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVSKYANNLVQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVK
LGTITPDGADVYSFQEEGPVSDPHLAKHLAHFGIDMLHTQGTENGFRDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQM
TKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELI
AYELMRREAETNRRPLPELVRAKIPFSACLQAFAEPDNVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPRKFDVSIDMPDLLDISHLRARGLQPGEEELPDISPPIVIPDDSKDRL
MNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAIPGYGGAGASAFGATGLDNQPPEEIVAIITAMGFQRSQAVQALQATNHNLERALDWIFSHPEFEEDS
DFVIEMENNANANIMSEAKPEGPRVKDGSGMYELFAFISHMGTSTMSGHYVCHIKKEGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS

hide sequence

Ensembl Acc Id:

ENSRNOP00000039985 ⟸ ENSRNOT00000048030

Protein Domains

UBA UBP-type USP

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZDI9-F1-model_v2	AlphaFold	D3ZDI9	1-858	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13691283

Promoter ID:

EPDNEW_R1808

Type:

multiple initiation site

Name:

Usp13_1

Description:

ubiquitin specific peptidase 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	119,197,228 - 119,197,288	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-53415	BioCyc
Ensembl Genes	ENSRNOG00000030639	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000048030	ENTREZGENE
	ENSRNOT00000048030.6	UniProtKB/TrEMBL
	ENSRNOT00000157346	ENTREZGENE
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	Cysteine proteinases	UniProtKB/TrEMBL
	DNA helicase RuvA subunit, C-terminal domain	UniProtKB/TrEMBL
InterPro	Papain_like_cys_pep_sf	UniProtKB/TrEMBL
	Pept_C19ubi-hydrolase_C_CS	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	Ub_carboxyl-term_hydrolase	UniProtKB/TrEMBL
	UBA-like	UniProtKB/TrEMBL
	UBA/transl_elong_EF1B_N_euk	UniProtKB/TrEMBL
	Ubiquitinyl_hydrolase	UniProtKB/TrEMBL
	UBP13_Znf-UBP_var	UniProtKB/TrEMBL
	UCH/PAN2	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_UBP	UniProtKB/TrEMBL
KEGG Report	rno:310306	UniProtKB/TrEMBL
NCBI Gene	310306	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 13	UniProtKB/TrEMBL
Pfam	UBA	UniProtKB/TrEMBL
	UBA_7	UniProtKB/TrEMBL
	UCH	UniProtKB/TrEMBL
	zf-UBP	UniProtKB/TrEMBL
	zf-UBP_var	UniProtKB/TrEMBL
PhenoGen	Usp13	PhenoGen
PIRSF	UBP	UniProtKB/TrEMBL
PROSITE	UBA	UniProtKB/TrEMBL
	UCH_2_1	UniProtKB/TrEMBL
	UCH_2_2	UniProtKB/TrEMBL
	UCH_2_3	UniProtKB/TrEMBL
	ZF_UBP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000030639	RatGTEx
SMART	UBA	UniProtKB/TrEMBL
	ZnF_UBP	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
	UBA_like	UniProtKB/TrEMBL
UniProt	A6IHR3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZDI9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-07-26	Usp13	ubiquitin specific peptidase 13	Usp13	ubiquitin specific protease 13 (isopeptidase T-3)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Usp13	ubiquitin specific protease 13 (isopeptidase T-3)	Usp13_predicted	ubiquitin specific protease 13 (isopeptidase T-3) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Usp13_predicted	ubiquitin specific protease 13 (isopeptidase T-3) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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