Advanced Search (OLGA)

Gene: USP13 (ubiquitin specific peptidase 13) Canis lupus familiaris

Subscribe to Updates

Analyze

Symbol:

USP13

Name:

ubiquitin specific peptidase 13

RGD ID:

12170999

Description:

ENCODES a protein that exhibits BAT3 complex binding (inferred); cysteine-type deubiquitinase activity (inferred); cysteine-type endopeptidase activity (inferred); INVOLVED IN protein K63-linked deubiquitination (ortholog); protein stabilization (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); Currarino syndrome (ortholog); skin disease (ortholog); INTERACTS WITH bisphenol A

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ubiquitin carboxyl-terminal hydrolase 13; ubiquitin specific peptidase 13 (isopeptidase T-3)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	13,059,099 - 13,175,980 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	13,059,092 - 13,171,234 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	17,200,915 - 17,303,172 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	12,957,093 - 13,074,094 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	12,957,085 - 13,069,581 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	13,008,227 - 13,125,027 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	12,990,863 - 13,107,688 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	13,230,757 - 13,347,935 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
USP13	Dog	Currarino syndrome		ISO	RGD:1314436	8554872	ClinVar Annotator: match by term: Currarino triad	ClinVar	PMID:21681106\|PMID:27549440
USP13	Dog	syndromic microphthalmia 3		ISO	RGD:1314436	8554872	ClinVar Annotator: match by term: Anophthalmia/microphthalmia-esophageal atresia syndrome	ClinVar	PMID:16543359

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
USP13	Dog	Arsenic Poisoning		ISO	RGD:1314436	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:16835338
USP13	Dog	skin disease		ISO	RGD:1314436	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:16835338

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
USP13	Dog	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of USP13 mRNA	CTD	PMID:38866337

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
USP13	Dog	autophagy	involved_in	IEA	UniProtKB-KW:KW-0072	150520179		UniProt	GO_REF:0000043
USP13	Dog	cell population proliferation	involved_in	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	maintenance of unfolded protein	involved_in	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	positive regulation of ERAD pathway	involved_in	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	protein deubiquitination	involved_in	IEA	InterPro:IPR001394\|InterPro:IPR016652	150520179		InterPro	GO_REF:0000002
USP13	Dog	protein K29-linked deubiquitination	acts_upstream_of_or_within	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	protein K6-linked deubiquitination	acts_upstream_of_or_within	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	protein K63-linked deubiquitination	acts_upstream_of_or_within	ISO	RGD:1314436	9068941	PMID:26280536	MGI	PMID:26280536
USP13	Dog	protein K63-linked deubiquitination	involved_in	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	protein stabilization	acts_upstream_of_or_within	ISO	RGD:1314436	9068941	PMID:26280536	MGI	PMID:26280536
USP13	Dog	protein stabilization	involved_in	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	150520179		UniProt	GO_REF:0000043
USP13	Dog	regulation of autophagy	involved_in	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	regulation of DNA-templated transcription	involved_in	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	regulation of protein stability	involved_in	IBA	FB:FBgn0016756\|FB:FBgn0039214\|MGI:1888998\|MGI:1919594\|MGI:2182061\|PANTHER:PTN002541993\|RGD:1306915\|UniProtKB:Q92995\|UniProtKB:Q93008\|UniProtKB:Q93009\|UniProtKB:Q96RU2\|UniProtKB:Q9P275	150520179		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
USP13	Dog	cytosol	is_active_in	IBA	FB:FBgn0016756\|FB:FBgn0030366\|PANTHER:PTN002541993\|SGD:S000004920\|TAIR:locus:505006491\|UniProtKB:Q14694\|UniProtKB:Q86UV5\|UniProtKB:Q93008\|UniProtKB:Q93009\|UniProtKB:Q9BXU7\|UniProtKB:Q9UHP3\|UniProtKB:Q9UMW8	150520179		GO_Central	GO_REF:0000033
USP13	Dog	nucleus	is_active_in	IBA	FB:FBgn0016756\|FB:FBgn0030366\|FB:FBgn0039214\|FB:FBgn0260936\|MGI:2182061\|PANTHER:PTN002541993\|PomBase:SPBC713.02c\|PomBase:SPCC1682.12c\|SGD:S000005130\|TAIR:locus:2020412\|TAIR:locus:2060395\|TAIR:locus:2081501\|TAIR:locus:2090985\|TAIR:locus:2140074\|TAIR:locus:2144118\|TAIR:locus:2174403\|UniProtKB:O75317\|UniProtKB:O94782\|UniProtKB:Q0WX57\|UniProtKB:Q14694\|UniProtKB:Q582C5\|UniProtKB:Q6QN14\|UniProtKB:Q6R6M4\|UniProtKB:Q86T82\|UniProtKB:Q86UV5\|UniProtKB:Q93009\|UniProtKB:Q96K76\|UniProtKB:Q96RU2\|UniProtKB:Q9BXU7\|UniProtKB:Q9P275\|UniProtKB:Q9UMW8\|WB:WBGene00010406	150520179		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
USP13	Dog	BAT3 complex binding	enables	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR001394\|InterPro:IPR016652\|InterPro:IPR018200	150520179		InterPro	GO_REF:0000002
USP13	Dog	cysteine-type deubiquitinase activity	enables	IBA	FB:FBgn0005632\|FB:FBgn0016756\|FB:FBgn0030366\|FB:FBgn0033738\|FB:FBgn0260936\|MGI:107697\|MGI:107698\|MGI:107699\|MGI:1924050\|MGI:2140991\|MGI:2182061\|MGI:3051372\|MGI:3051498\|MGI:894681\|PANTHER:PTN002541993\|PomBase:SPAC13A11.04c\|PomBase:SPBP8B7.21\|RGD:1306915\|SGD:S000000163\|SGD:S000000262\|SGD:S000000953\|SGD:S000001418\|SGD:S000002280\|SGD:S000004920\|SGD:S000005130\|SGD:S000005650\|TAIR:locus:2010622\|TAIR:locus:2020412\|TAIR:locus:2060395\|TAIR:locus:2081501\|TAIR:locus:2121959\|TAIR:locus:2122447\|TAIR:locus:2140074\|TAIR:locus:2144118\|UniProtKB:O00507\|UniProtKB:O75317\|UniProtKB:O94782\|UniProtKB:P62068\|UniProtKB:Q0WX57\|UniProtKB:Q14694\|UniProtKB:Q6R6M4\|UniProtKB:Q70CQ2\|UniProtKB:Q70CQ3\|UniProtKB:Q86T82\|UniProtKB:Q8NB14\|UniProtKB:Q92995\|UniProtKB:Q93008\|UniProtKB:Q93009\|UniProtKB:Q96K76\|UniProtKB:Q96RU2\|UniProtKB:Q96V54\|UniProtKB:Q9H9J4\|UniProtKB:Q9P275\|UniProtKB:Q9P2H5\|UniProtKB:Q9UHP3\|WB:WBGene00010406\|WB:WBGene00011216\|ZFIN:ZDB-GENE-060526-335\|dictyBase:DDB_G0291239	150520179		GO_Central	GO_REF:0000033
USP13	Dog	cysteine-type deubiquitinase activity	enables	IEA	UniRule:UR000859761\|UniRule:UR000880756	150520179		UniProt	GO_REF:0000104
USP13	Dog	cysteine-type deubiquitinase activity	enables	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	cysteine-type endopeptidase activity	enables	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	150520179		UniProt	GO_REF:0000043
USP13	Dog	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	150520179		UniProt	GO_REF:0000043
USP13	Dog	K48-linked deubiquitinase activity	enables	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
USP13	Dog	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	150520179		UniProt	GO_REF:0000043
USP13	Dog	proteasome binding	enables	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	protein binding	enables	ISO	UniProtKB:Q15038	9068941	PMID:32296183	IntAct	PMID:32296183
USP13	Dog	protein binding	enables	ISO	UniProtKB:Q969Q1\|UniProtKB:Q9BYV6	9068941	PMID:31391242	IntAct	PMID:31391242
USP13	Dog	protein binding	enables	ISO	UniProtKB:P54252\|UniProtKB:Q13148	9068941	PMID:32814053	IntAct	PMID:32814053
USP13	Dog	protein binding	enables	ISO	UniProtKB:P0DTD1-PRO_0000449630	9068941	PMID:32353859, PMID:33060197, PMID:33707416	IntAct	PMID:32353859\|PMID:33060197\|PMID:33707416
USP13	Dog	protein binding	enables	ISO	UniProtKB:Q14457	9068941	PMID:21962518	UniProt	PMID:21962518
USP13	Dog	protein binding	enables	ISO	UniProtKB:O75030	9068941	PMID:21811243	UniProt	PMID:21811243
USP13	Dog	protein-folding chaperone binding	enables	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	ubiquitin binding	enables	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	ubiquitin protein ligase binding	enables	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	ubiquitin-like protein ligase binding	enables	IEA	UniProtKB:Q92995\|ensembl:ENSP00000263966	150520179		Ensembl	GO_REF:0000107
USP13	Dog	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	150520179		UniProt	GO_REF:0000043
USP13	Dog	zinc ion binding	enables	IEA	UniRule:UR000859761	150520179		UniProt	GO_REF:0000104
USP13	Dog	zinc ion binding	enables	IEA	InterPro:IPR001607	150520179		InterPro	GO_REF:0000002

PMID:22301074

USP13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	13,059,099 - 13,175,980 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	13,059,092 - 13,171,234 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	17,200,915 - 17,303,172 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	12,957,093 - 13,074,094 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	12,957,085 - 13,069,581 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	13,008,227 - 13,125,027 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	12,990,863 - 13,107,688 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	13,230,757 - 13,347,935 (+)	NCBI		UU_Cfam_GSD_1.0

USP13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	179,653,040 - 179,789,401 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	179,653,032 - 179,804,366 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	179,370,828 - 179,507,189 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	180,853,635 - 180,984,675 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	180,853,642 - 180,984,683	NCBI
Celera	3	177,801,905 - 177,938,115 (+)	NCBI		Celera
Cytogenetic Map	3	q26.33	NCBI
HuRef	3	176,774,718 - 176,910,711 (+)	NCBI		HuRef
CHM1_1	3	179,334,034 - 179,470,263 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	182,456,880 - 182,592,926 (+)	NCBI		T2T-CHM13v2.0

Usp13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	32,870,432 - 32,992,224 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	32,871,695 - 32,992,220 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	32,816,283 - 32,938,075 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	32,817,546 - 32,938,071 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	32,716,548 - 32,834,179 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	33,009,175 - 33,126,806 (+)	NCBI		MGSCv36	mm8
Celera	3	32,725,174 - 32,842,630 (+)	NCBI		Celera
Cytogenetic Map	3	A3	NCBI
cM Map	3	15.88	NCBI

Usp13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,502,811 - 117,617,049 (+)	NCBI		GRCr8
mRatBN7.2	2	115,576,912 - 115,689,153 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,577,091 - 115,686,222 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	122,183,691 - 122,291,902 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	120,296,325 - 120,404,549 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,998,508 - 115,106,662 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	119,197,153 - 119,317,507 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	119,197,239 - 119,317,500 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	138,848,099 - 138,947,514 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	2	138,961,986 - 138,965,318 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	119,006,687 - 119,116,188 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	118,951,691 - 119,057,605 (+)	NCBI
Celera	2	110,680,308 - 110,788,182 (+)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

Usp13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	8,835,549 - 8,919,933 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	8,835,858 - 8,919,837 (+)	NCBI	ChiLan1.0	ChiLan1.0

USP13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	177,521,579 - 177,654,597 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	177,526,444 - 177,656,313 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	176,685,541 - 176,818,360 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	184,856,295 - 184,988,305 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	184,855,388 - 184,983,158 (+)	Ensembl	panpan1.1		panPan2

Usp13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	109,698,615 - 109,804,274 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936566	3,416,389 - 3,522,133 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936566	3,416,468 - 3,522,127 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	117,700,119 - 117,826,944 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	117,700,080 - 117,826,951 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	126,874,063 - 126,917,846 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	9,619,065 - 9,753,490 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	9,624,300 - 9,753,466 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	18,478,400 - 18,623,806 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	57,384,884 - 57,495,765 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	57,384,878 - 57,495,761 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in USP13
1494 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10


RefSeq Transcripts	XM_003434127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038445613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038445614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038445615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038445616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038462878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038462879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038462880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038462881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038519793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038519794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038519795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038519796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038583433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038583434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038583435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038583436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038647845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038647846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038647847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038647849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000018199 ⟹ ENSCAFP00000016852

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	34	13,059,092 - 13,171,234 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000089971 ⟹ ENSCAFP00000064139

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	34	13,059,092 - 13,171,234 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845029891 ⟹ ENSCAFP00845023472

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	34	12,957,085 - 13,054,571 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845029975 ⟹ ENSCAFP00845023523

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	34	12,957,085 - 13,054,571 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845030056 ⟹ ENSCAFP00845023578

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	34	12,957,175 - 13,069,581 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845030173 ⟹ ENSCAFP00845023663

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	34	12,957,175 - 13,069,581 (+)	Ensembl

RefSeq Acc Id:

XM_038445613 ⟹ XP_038301541

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	34	12,957,093 - 13,074,094 (+)	NCBI

RefSeq Acc Id:

XM_038445614 ⟹ XP_038301542

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	34	12,968,747 - 13,074,094 (+)	NCBI

RefSeq Acc Id:

XM_038445615 ⟹ XP_038301543

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	34	12,974,957 - 13,074,094 (+)	NCBI

RefSeq Acc Id:

XM_038445616 ⟹ XP_038301544

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	34	13,003,497 - 13,074,094 (+)	NCBI

RefSeq Acc Id:

XM_038462878 ⟹ XP_038318806

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	34	17,200,915 - 17,303,172 (+)	NCBI

RefSeq Acc Id:

XM_038462879 ⟹ XP_038318807

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	34	17,212,541 - 17,303,172 (+)	NCBI

RefSeq Acc Id:

XM_038462880 ⟹ XP_038318808

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	34	17,218,751 - 17,303,172 (+)	NCBI

RefSeq Acc Id:

XM_038462881 ⟹ XP_038318809

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	34	17,247,074 - 17,303,172 (+)	NCBI

RefSeq Acc Id:

XM_038519793 ⟹ XP_038375721

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	34	13,008,227 - 13,125,027 (+)	NCBI

RefSeq Acc Id:

XM_038519794 ⟹ XP_038375722

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	34	13,019,866 - 13,125,027 (+)	NCBI

RefSeq Acc Id:

XM_038519795 ⟹ XP_038375723

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	34	13,026,073 - 13,125,027 (+)	NCBI

RefSeq Acc Id:

XM_038519796 ⟹ XP_038375724

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	34	13,054,355 - 13,125,027 (+)	NCBI

RefSeq Acc Id:

XM_038583433 ⟹ XP_038439361

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	34	13,230,757 - 13,347,935 (+)	NCBI

RefSeq Acc Id:

XM_038583434 ⟹ XP_038439362

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	34	13,242,605 - 13,347,935 (+)	NCBI

RefSeq Acc Id:

XM_038583435 ⟹ XP_038439363

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	34	13,248,816 - 13,347,935 (+)	NCBI

RefSeq Acc Id:

XM_038583436 ⟹ XP_038439364

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	34	13,277,345 - 13,347,935 (+)	NCBI

RefSeq Acc Id:

XM_038647845 ⟹ XP_038503773

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	34	12,990,863 - 13,107,688 (+)	NCBI

RefSeq Acc Id:

XM_038647846 ⟹ XP_038503774

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	34	13,002,508 - 13,107,688 (+)	NCBI

RefSeq Acc Id:

XM_038647847 ⟹ XP_038503775

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	34	13,008,718 - 13,107,688 (+)	NCBI

RefSeq Acc Id:

XM_038647849 ⟹ XP_038503777

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	34	13,037,012 - 13,107,688 (+)	NCBI


Protein RefSeqs	XP_038301541	(Get FASTA)	NCBI Sequence Viewer
	XP_038301542	(Get FASTA)	NCBI Sequence Viewer
	XP_038301543	(Get FASTA)	NCBI Sequence Viewer
	XP_038301544	(Get FASTA)	NCBI Sequence Viewer
	XP_038318806	(Get FASTA)	NCBI Sequence Viewer
	XP_038318807	(Get FASTA)	NCBI Sequence Viewer
	XP_038318808	(Get FASTA)	NCBI Sequence Viewer
	XP_038318809	(Get FASTA)	NCBI Sequence Viewer
	XP_038375721	(Get FASTA)	NCBI Sequence Viewer
	XP_038375722	(Get FASTA)	NCBI Sequence Viewer
	XP_038375723	(Get FASTA)	NCBI Sequence Viewer
	XP_038375724	(Get FASTA)	NCBI Sequence Viewer
	XP_038439361	(Get FASTA)	NCBI Sequence Viewer
	XP_038439362	(Get FASTA)	NCBI Sequence Viewer
	XP_038439363	(Get FASTA)	NCBI Sequence Viewer
	XP_038439364	(Get FASTA)	NCBI Sequence Viewer
	XP_038503773	(Get FASTA)	NCBI Sequence Viewer
	XP_038503774	(Get FASTA)	NCBI Sequence Viewer
	XP_038503775	(Get FASTA)	NCBI Sequence Viewer
	XP_038503777	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000016852.4
	ENSCAFP00000064139.2
	ENSCAFP00030028195.1
	ENSCAFP00030028305.1
	ENSCAFP00030028515.1
	ENSCAFP00030028683.1
	ENSCAFP00030028821.1
	ENSCAFP00030028939.1
	ENSCAFP00030029061.1
	ENSCAFP00030029185.1
	ENSCAFP00040032787.1
	ENSCAFP00040032862.1
	ENSCAFP00040032990.1
	ENSCAFP00040033067.1
	ENSCAFP00040033146.1
	ENSCAFP00040033238.1
	ENSCAFP00845023472.1
	ENSCAFP00845023523.1
	ENSCAFP00845023578
	ENSCAFP00845023578.1
	ENSCAFP00845023663.1

Ensembl Acc Id:

ENSCAFP00000016852 ⟸ ENSCAFT00000018199

Ensembl Acc Id:

ENSCAFP00000064139 ⟸ ENSCAFT00000089971

RefSeq Acc Id:	XP_038375721 ⟸ XM_038519793
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038375722 ⟸ XM_038519794
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038375723 ⟸ XM_038519795
- Peptide Label:	isoform X3

Protein Domains

UBA UBP-type USP

RGD ID:

13688879

Promoter ID:

EPDNEW_C6947

Type:

initiation region

Name:

USP13_1

Description:

ubiquitin specific peptidase 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	34	13,058,872 - 13,058,932	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000011446	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030017561	UniProtKB/TrEMBL
	ENSCAFG00040020336	UniProtKB/TrEMBL
	ENSCAFG00845016860	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000018199.5	UniProtKB/TrEMBL
	ENSCAFT00000089971.2	UniProtKB/TrEMBL
	ENSCAFT00030032334.1	UniProtKB/TrEMBL
	ENSCAFT00030032453.1	UniProtKB/TrEMBL
	ENSCAFT00030032682.1	UniProtKB/TrEMBL
	ENSCAFT00030032882.1	UniProtKB/TrEMBL
	ENSCAFT00030033041.1	UniProtKB/TrEMBL
	ENSCAFT00030033173.1	UniProtKB/TrEMBL
	ENSCAFT00030033304.1	UniProtKB/TrEMBL
	ENSCAFT00030033452.1	UniProtKB/TrEMBL
	ENSCAFT00040037620.1	UniProtKB/TrEMBL
	ENSCAFT00040037705.1	UniProtKB/TrEMBL
	ENSCAFT00040037847.1	UniProtKB/TrEMBL
	ENSCAFT00040037937.1	UniProtKB/TrEMBL
	ENSCAFT00040038025.1	UniProtKB/TrEMBL
	ENSCAFT00040038131.1	UniProtKB/TrEMBL
	ENSCAFT00845029891.1	UniProtKB/TrEMBL
	ENSCAFT00845029975.1	UniProtKB/TrEMBL
	ENSCAFT00845030056	ENTREZGENE
	ENSCAFT00845030056.1	UniProtKB/TrEMBL
	ENSCAFT00845030173.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	Cysteine proteinases	UniProtKB/TrEMBL
	DNA helicase RuvA subunit, C-terminal domain	UniProtKB/TrEMBL
InterPro	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	Peptidase_C19_UCH	UniProtKB/TrEMBL
	Ub_carboxyl-term_hydrolase	UniProtKB/TrEMBL
	UBA	UniProtKB/TrEMBL
	UBA-like_sf	UniProtKB/TrEMBL
	Ubiquitinyl_hydrolase	UniProtKB/TrEMBL
	UBP13_Znf-UBP_var	UniProtKB/TrEMBL
	USP_CS	UniProtKB/TrEMBL
	USP_dom	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_UBP	UniProtKB/TrEMBL
NCBI Gene	USP13	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 13	UniProtKB/TrEMBL
Pfam	UBA_7	UniProtKB/TrEMBL
	UCH	UniProtKB/TrEMBL
	zf-UBP	UniProtKB/TrEMBL
	zf-UBP_var	UniProtKB/TrEMBL
PIRSF	UBP	UniProtKB/TrEMBL
PROSITE	UBA	UniProtKB/TrEMBL
	USP_1	UniProtKB/TrEMBL
	USP_2	UniProtKB/TrEMBL
	USP_3	UniProtKB/TrEMBL
	ZF_UBP	UniProtKB/TrEMBL
SMART	UBA	UniProtKB/TrEMBL
	ZnF_UBP	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF46934	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
UniProt	A0A8C0LH16	ENTREZGENE
	A0A8C0NRR8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0NT28_CANLF	UniProtKB/TrEMBL
	A0A8C0P1Z3_CANLF	UniProtKB/TrEMBL
	A0A8C0RMI1_CANLF	UniProtKB/TrEMBL
	A0A8C0RMJ9_CANLF	UniProtKB/TrEMBL
	A0A8C0RMN4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0RMS4_CANLF	UniProtKB/TrEMBL
	A0A8C0TAK8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TB11_CANLF	UniProtKB/TrEMBL
	A0A8C0TBD6_CANLF	UniProtKB/TrEMBL
	A0A8C0TDM1_CANLF	UniProtKB/TrEMBL
	A0A8I3NRV0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NWS0_CANLF	UniProtKB/TrEMBL
	A0A8I3NY77	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P199	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PCT0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SG53	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:49638	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-08-08	USP13	ubiquitin specific peptidase 13		ubiquitin specific peptidase 13 (isopeptidase T-3)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD