USP13 (ubiquitin specific peptidase 13) - Rat Genome Database

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Gene: USP13 (ubiquitin specific peptidase 13) Homo sapiens
Analyze
Symbol: USP13
Name: ubiquitin specific peptidase 13
RGD ID: 1314436
HGNC Page HGNC:12611
Description: Enables several functions, including BAT3 complex binding activity; peptidase activity; and proteasome binding activity. Involved in several processes, including maintenance of unfolded protein; positive regulation of ERAD pathway; and regulation of autophagy. Acts upstream of or within protein stabilization. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: deubiquitinating enzyme 13; isopeptidase T-3; IsoT-3; ISOT3; ubiquitin carboxyl-terminal hydrolase 13; ubiquitin specific peptidase 13 (isopeptidase T-3); ubiquitin specific protease 13 (isopeptidase T-3); ubiquitin thioesterase 13; ubiquitin thiolesterase 13; ubiquitin-specific-processing protease 13
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383179,653,040 - 179,789,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3179,653,032 - 179,804,366 (+)EnsemblGRCh38hg38GRCh38
GRCh373179,370,828 - 179,507,189 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363180,853,635 - 180,984,675 (+)NCBINCBI36Build 36hg18NCBI36
Build 343180,853,642 - 180,984,683NCBI
Celera3177,801,905 - 177,938,115 (+)NCBICelera
Cytogenetic Map3q26.33NCBI
HuRef3176,774,718 - 176,910,711 (+)NCBIHuRef
CHM1_13179,334,034 - 179,470,263 (+)NCBICHM1_1
T2T-CHM13v2.03182,456,880 - 182,592,926 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,TAS)
nucleoplasm  (TAS)
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9827704   PMID:9841226   PMID:11076863   PMID:11927605   PMID:12477932   PMID:12838346   PMID:14702039   PMID:15231748   PMID:15489336   PMID:16169070   PMID:16381901   PMID:17148452  
PMID:18029348   PMID:19013454   PMID:19615732   PMID:20379614   PMID:21571647   PMID:21659512   PMID:21811243   PMID:21873635   PMID:21962518   PMID:22216260   PMID:22658674   PMID:22939629  
PMID:23314748   PMID:23940278   PMID:24270891   PMID:24424410   PMID:25659891   PMID:26186194   PMID:26280536   PMID:26344197   PMID:26453058   PMID:26496610   PMID:27801882   PMID:27869170  
PMID:27892457   PMID:27923907   PMID:28190767   PMID:28498477   PMID:28514442   PMID:28569838   PMID:29119051   PMID:29180619   PMID:29335437   PMID:29396516   PMID:29507755   PMID:29567855  
PMID:29576527   PMID:30323974   PMID:30329047   PMID:30659120   PMID:30659753   PMID:30986623   PMID:31010829   PMID:31200745   PMID:31281542   PMID:31391242   PMID:31594232   PMID:31699778  
PMID:31741433   PMID:32101753   PMID:32129945   PMID:32255563   PMID:32296183   PMID:32353859   PMID:32416067   PMID:32434004   PMID:32453420   PMID:32735883   PMID:32814053   PMID:33060197  
PMID:33195243   PMID:33241194   PMID:33243234   PMID:33277362   PMID:33334891   PMID:33378983   PMID:33592542   PMID:33627786   PMID:33669244   PMID:33707416   PMID:33961781   PMID:34001947  
PMID:34179099   PMID:34642328   PMID:34688658   PMID:34758305   PMID:34872023   PMID:35271311   PMID:35397714   PMID:35583846   PMID:35831314   PMID:35898882   PMID:35914814   PMID:36037364  
PMID:36114200   PMID:36183834   PMID:36215168   PMID:36528756   PMID:36535926   PMID:36564767   PMID:36585612   PMID:36612196   PMID:36732432   PMID:36880662   PMID:37151889   PMID:37311811  
PMID:37689310   PMID:37776917   PMID:37827155   PMID:38043062   PMID:38093367  


Genomics

Comparative Map Data
USP13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383179,653,040 - 179,789,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3179,653,032 - 179,804,366 (+)EnsemblGRCh38hg38GRCh38
GRCh373179,370,828 - 179,507,189 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363180,853,635 - 180,984,675 (+)NCBINCBI36Build 36hg18NCBI36
Build 343180,853,642 - 180,984,683NCBI
Celera3177,801,905 - 177,938,115 (+)NCBICelera
Cytogenetic Map3q26.33NCBI
HuRef3176,774,718 - 176,910,711 (+)NCBIHuRef
CHM1_13179,334,034 - 179,470,263 (+)NCBICHM1_1
T2T-CHM13v2.03182,456,880 - 182,592,926 (+)NCBIT2T-CHM13v2.0
Usp13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39332,870,432 - 32,992,224 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl332,871,695 - 32,992,220 (+)EnsemblGRCm39 Ensembl
GRCm38332,816,283 - 32,938,075 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl332,817,546 - 32,938,071 (+)EnsemblGRCm38mm10GRCm38
MGSCv37332,716,548 - 32,834,179 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36333,009,175 - 33,126,806 (+)NCBIMGSCv36mm8
Celera332,725,174 - 32,842,630 (+)NCBICelera
Cytogenetic Map3A3NCBI
cM Map315.88NCBI
Usp13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82117,502,811 - 117,617,049 (+)NCBIGRCr8
mRatBN7.22115,576,912 - 115,689,153 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2115,577,091 - 115,686,222 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2122,183,691 - 122,291,902 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02120,296,325 - 120,404,549 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02114,998,508 - 115,106,662 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02119,197,153 - 119,317,507 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2119,197,239 - 119,317,500 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02138,848,099 - 138,947,514 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02138,961,986 - 138,965,318 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42119,006,687 - 119,116,188 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12118,951,691 - 119,057,605 (+)NCBI
Celera2110,680,308 - 110,788,182 (+)NCBICelera
Cytogenetic Map2q24NCBI
Usp13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554208,835,549 - 8,919,933 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554208,835,858 - 8,919,837 (+)NCBIChiLan1.0ChiLan1.0
USP13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22177,521,579 - 177,654,597 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13177,526,444 - 177,656,313 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03176,685,541 - 176,818,360 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13184,856,295 - 184,988,305 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3184,855,388 - 184,983,158 (+)Ensemblpanpan1.1panPan2
USP13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13413,059,099 - 13,175,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3413,059,092 - 13,171,234 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3417,200,915 - 17,303,172 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03412,957,093 - 13,074,094 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3412,957,085 - 13,069,581 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13413,008,227 - 13,125,027 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03412,990,863 - 13,107,688 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03413,230,757 - 13,347,935 (+)NCBIUU_Cfam_GSD_1.0
Usp13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602109,698,615 - 109,804,274 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365663,416,389 - 3,522,133 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365663,416,468 - 3,522,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13117,700,119 - 117,826,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113117,700,080 - 117,826,951 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213126,874,063 - 126,917,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1159,619,065 - 9,753,490 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl159,624,300 - 9,753,466 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606318,478,400 - 18,623,806 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473057,384,884 - 57,495,765 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473057,384,878 - 57,495,761 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in USP13
45 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3q24-29(chr3:147521892-198096565)x3 copy number gain See cases [RCV000051725] Chr3:147521892..198096565 [GRCh38]
Chr3:147239679..197823436 [GRCh37]
Chr3:148722369..199307833 [NCBI36]
Chr3:3q24-29		 pathogenic
GRCh38/hg38 3q25.31-29(chr3:157293378-198134727)x3 copy number gain See cases [RCV000051726] Chr3:157293378..198134727 [GRCh38]
Chr3:157011167..197861598 [GRCh37]
Chr3:158493861..199345995 [NCBI36]
Chr3:3q25.31-29		 pathogenic
GRCh38/hg38 3q26.32-29(chr3:178411707-198110319)x3 copy number gain See cases [RCV000051736] Chr3:178411707..198110319 [GRCh38]
Chr3:178129495..197837190 [GRCh37]
Chr3:179612189..199321587 [NCBI36]
Chr3:3q26.32-29		 pathogenic
GRCh38/hg38 3q22.3-29(chr3:137126982-198110178)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]|See cases [RCV000051723] Chr3:137126982..198110178 [GRCh38]
Chr3:136845824..197837049 [GRCh37]
Chr3:138328514..199321446 [NCBI36]
Chr3:3q22.3-29		 pathogenic
NM_003940.2(USP13):c.1254+1159C>G single nucleotide variant Lung cancer [RCV000093330] Chr3:179731868 [GRCh38]
Chr3:179449656 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.2(USP13):c.806-3824G>A single nucleotide variant Lung cancer [RCV000093329] Chr3:179716116 [GRCh38]
Chr3:179433904 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.2(USP13):c.1709+3499G>A single nucleotide variant Lung cancer [RCV000093331] Chr3:179748716 [GRCh38]
Chr3:179466504 [GRCh37]
Chr3:3q26.33		 uncertain significance
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29		 pathogenic
GRCh38/hg38 3q26.2-29(chr3:168167568-198110178)x3 copy number gain See cases [RCV000137106] Chr3:168167568..198110178 [GRCh38]
Chr3:167885356..197837049 [GRCh37]
Chr3:169368050..199321446 [NCBI36]
Chr3:3q26.2-29		 pathogenic
GRCh38/hg38 3q26.32-29(chr3:176439911-198118383)x3 copy number gain See cases [RCV000138009] Chr3:176439911..198118383 [GRCh38]
Chr3:176157699..197845254 [GRCh37]
Chr3:177640393..199329651 [NCBI36]
Chr3:3q26.32-29		 pathogenic|likely benign
GRCh38/hg38 3q26.32-29(chr3:176168525-198118383)x3 copy number gain See cases [RCV000138662] Chr3:176168525..198118383 [GRCh38]
Chr3:175886313..197845254 [GRCh37]
Chr3:177369007..199329651 [NCBI36]
Chr3:3q26.32-29		 pathogenic
GRCh38/hg38 3q26.1-26.33(chr3:165158611-180130168)x3 copy number gain See cases [RCV000139359] Chr3:165158611..180130168 [GRCh38]
Chr3:164876399..179847956 [GRCh37]
Chr3:166359093..181330650 [NCBI36]
Chr3:3q26.1-26.33		 pathogenic
GRCh38/hg38 3q25.1-29(chr3:152100512-198118383)x3 copy number gain See cases [RCV000139435] Chr3:152100512..198118383 [GRCh38]
Chr3:151818301..197845254 [GRCh37]
Chr3:153300991..199329651 [NCBI36]
Chr3:3q25.1-29		 pathogenic
GRCh38/hg38 3q25.31-29(chr3:156321878-198113452)x3 copy number gain See cases [RCV000140849] Chr3:156321878..198113452 [GRCh38]
Chr3:156039667..197840323 [GRCh37]
Chr3:157522361..199324720 [NCBI36]
Chr3:3q25.31-29		 pathogenic
GRCh38/hg38 3q25.31-29(chr3:156118441-198125115)x3 copy number gain See cases [RCV000142310] Chr3:156118441..198125115 [GRCh38]
Chr3:155836230..197851986 [GRCh37]
Chr3:157318924..199336383 [NCBI36]
Chr3:3q25.31-29		 pathogenic
GRCh38/hg38 3q26.1-28(chr3:167717962-188365272)x3 copy number gain See cases [RCV000142107] Chr3:167717962..188365272 [GRCh38]
Chr3:167435750..188083060 [GRCh37]
Chr3:168918444..189565754 [NCBI36]
Chr3:3q26.1-28		 likely pathogenic
GRCh38/hg38 3q26.32-26.33(chr3:178391683-179786092)x3 copy number gain See cases [RCV000143712] Chr3:178391683..179786092 [GRCh38]
Chr3:178109471..179503880 [GRCh37]
Chr3:179592165..180986574 [NCBI36]
Chr3:3q26.32-26.33		 likely benign|uncertain significance
GRCh38/hg38 3q26.1-29(chr3:166137209-198125115)x3 copy number gain See cases [RCV000143694] Chr3:166137209..198125115 [GRCh38]
Chr3:165854997..197851986 [GRCh37]
Chr3:167337691..199336383 [NCBI36]
Chr3:3q26.1-29		 pathogenic
GRCh37/hg19 3q24-29(chr3:142995020-192997215)x4 copy number gain See cases [RCV000240256] Chr3:142995020..192997215 [GRCh37]
Chr3:3q24-29		 pathogenic
GRCh37/hg19 3q25.32-29(chr3:158980631-197766890)x3 copy number gain See cases [RCV000447464] Chr3:158980631..197766890 [GRCh37]
Chr3:3q25.32-29		 pathogenic
GRCh37/hg19 3q25.32-26.33(chr3:157128738-181637333)x3 copy number gain See cases [RCV000446611] Chr3:157128738..181637333 [GRCh37]
Chr3:3q25.32-26.33		 pathogenic
GRCh37/hg19 3q25.2-29(chr3:152356847-197851986)x3 copy number gain See cases [RCV000448608] Chr3:152356847..197851986 [GRCh37]
Chr3:3q25.2-29		 pathogenic
NC_000003.12:g.177772523_185716872dup duplication Currarino triad [RCV000417195] Chr3:177772523..185716872 [GRCh38]
Chr3:3q26.32-27.2		 likely pathogenic
NM_003940.3(USP13):c.1331G>A (p.Arg444Lys) single nucleotide variant Inborn genetic diseases [RCV003260337] Chr3:179740323 [GRCh38]
Chr3:179458111 [GRCh37]
Chr3:3q26.33		 uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
NM_003940.3(USP13):c.1750C>A (p.Gln584Lys) single nucleotide variant Inborn genetic diseases [RCV003292658] Chr3:179752325 [GRCh38]
Chr3:179470113 [GRCh37]
Chr3:3q26.33		 uncertain significance
GRCh37/hg19 3q26.32-26.33(chr3:178990782-179443371)x3 copy number gain not provided [RCV000682334] Chr3:178990782..179443371 [GRCh37]
Chr3:3q26.32-26.33		 uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3q26.31-29(chr3:173281266-197838262)x3 copy number gain not provided [RCV000742968] Chr3:173281266..197838262 [GRCh37]
Chr3:3q26.31-29		 pathogenic
NM_003940.3(USP13):c.1476G>A (p.Thr492=) single nucleotide variant not provided [RCV000971501] Chr3:179742292 [GRCh38]
Chr3:179460080 [GRCh37]
Chr3:3q26.33		 benign
NM_003940.3(USP13):c.1921+5C>T single nucleotide variant not provided [RCV000951256] Chr3:179754859 [GRCh38]
Chr3:179472647 [GRCh37]
Chr3:3q26.33		 benign
NM_003940.3(USP13):c.642C>T (p.Cys214=) single nucleotide variant not provided [RCV000880090] Chr3:179708794 [GRCh38]
Chr3:179426582 [GRCh37]
Chr3:3q26.33		 benign
GRCh37/hg19 3q26.32-26.33(chr3:178869440-179400345)x3 copy number gain See cases [RCV000790607] Chr3:178869440..179400345 [GRCh37]
Chr3:3q26.32-26.33		 uncertain significance
GRCh37/hg19 3q26.2-28(chr3:169617690-190593854)x3 copy number gain not provided [RCV001005487] Chr3:169617690..190593854 [GRCh37]
Chr3:3q26.2-28		 pathogenic
NM_003940.3(USP13):c.1732C>G (p.Pro578Ala) single nucleotide variant Inborn genetic diseases [RCV003239621] Chr3:179752307 [GRCh38]
Chr3:179470095 [GRCh37]
Chr3:3q26.33		 uncertain significance
GRCh37/hg19 3q26.33(chr3:179016729-181527320)x1 copy number loss not provided [RCV001259729] Chr3:179016729..181527320 [GRCh37]
Chr3:3q26.33		 pathogenic
GRCh37/hg19 3q26.31-27.3(chr3:175119199-187592480)x3 copy number gain not provided [RCV001795540] Chr3:175119199..187592480 [GRCh37]
Chr3:3q26.31-27.3		 pathogenic
GRCh37/hg19 3q26.2-26.33(chr3:168118411-179867071)x3 copy number gain not provided [RCV001827868] Chr3:168118411..179867071 [GRCh37]
Chr3:3q26.2-26.33		 likely pathogenic
GRCh37/hg19 3q25.32-26.33(chr3:157128738-181637333) copy number gain not specified [RCV002053382] Chr3:157128738..181637333 [GRCh37]
Chr3:3q25.32-26.33		 pathogenic
GRCh37/hg19 3q26.31-29(chr3:171558472-197871052)x3 copy number gain Isolated anorectal malformation [RCV002286610] Chr3:171558472..197871052 [GRCh37]
Chr3:3q26.31-29		 likely pathogenic
NC_000003.12:g.(179547548_181649736)_(181808821_182152788)del deletion Anophthalmia/microphthalmia-esophageal atresia syndrome [RCV000013667] Chr3:181649736..181808821 [GRCh38]
Chr3:3q26.33		 pathogenic
NM_003940.3(USP13):c.16G>T (p.Ala6Ser) single nucleotide variant Inborn genetic diseases [RCV002974148] Chr3:179653241 [GRCh38]
Chr3:179371029 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.41G>A (p.Ser14Asn) single nucleotide variant Inborn genetic diseases [RCV002818085] Chr3:179653266 [GRCh38]
Chr3:179371054 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.2047G>A (p.Ala683Thr) single nucleotide variant Inborn genetic diseases [RCV002969390] Chr3:179761210 [GRCh38]
Chr3:179478998 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1891C>A (p.Pro631Thr) single nucleotide variant Inborn genetic diseases [RCV002989891] Chr3:179754824 [GRCh38]
Chr3:179472612 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1497G>A (p.Met499Ile) single nucleotide variant Inborn genetic diseases [RCV002951648] Chr3:179742313 [GRCh38]
Chr3:179460101 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1844G>A (p.Arg615Gln) single nucleotide variant Inborn genetic diseases [RCV002693313] Chr3:179754777 [GRCh38]
Chr3:179472565 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1597G>C (p.Glu533Gln) single nucleotide variant Inborn genetic diseases [RCV002955978] Chr3:179745105 [GRCh38]
Chr3:179462893 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.2159G>A (p.Gly720Asp) single nucleotide variant Inborn genetic diseases [RCV002803769] Chr3:179764068 [GRCh38]
Chr3:179481856 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.11G>A (p.Arg4Gln) single nucleotide variant Inborn genetic diseases [RCV002874453] Chr3:179653236 [GRCh38]
Chr3:179371024 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.544T>C (p.Trp182Arg) single nucleotide variant Inborn genetic diseases [RCV002764247] Chr3:179707000 [GRCh38]
Chr3:179424788 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1875A>C (p.Glu625Asp) single nucleotide variant Inborn genetic diseases [RCV002699721] Chr3:179754808 [GRCh38]
Chr3:179472596 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1459C>T (p.Arg487Trp) single nucleotide variant Inborn genetic diseases [RCV002763831] Chr3:179742275 [GRCh38]
Chr3:179460063 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1279C>T (p.Arg427Cys) single nucleotide variant Inborn genetic diseases [RCV002669261] Chr3:179740271 [GRCh38]
Chr3:179458059 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.971G>A (p.Gly324Asp) single nucleotide variant Inborn genetic diseases [RCV002959322] Chr3:179721472 [GRCh38]
Chr3:179439260 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1234G>A (p.Val412Met) single nucleotide variant Inborn genetic diseases [RCV002809611] Chr3:179730689 [GRCh38]
Chr3:179448477 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1829A>G (p.Asp610Gly) single nucleotide variant Inborn genetic diseases [RCV002879362] Chr3:179754762 [GRCh38]
Chr3:179472550 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.812A>T (p.Tyr271Phe) single nucleotide variant Inborn genetic diseases [RCV002940822] Chr3:179719946 [GRCh38]
Chr3:179437734 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.80T>G (p.Leu27Arg) single nucleotide variant Inborn genetic diseases [RCV002673278] Chr3:179653305 [GRCh38]
Chr3:179371093 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.904G>A (p.Glu302Lys) single nucleotide variant Inborn genetic diseases [RCV002722569] Chr3:179721405 [GRCh38]
Chr3:179439193 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1885A>G (p.Ile629Val) single nucleotide variant Inborn genetic diseases [RCV002677095] Chr3:179754818 [GRCh38]
Chr3:179472606 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.179G>A (p.Gly60Asp) single nucleotide variant Inborn genetic diseases [RCV003219876] Chr3:179681888 [GRCh38]
Chr3:179399676 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.160G>A (p.Asp54Asn) single nucleotide variant Inborn genetic diseases [RCV003192551] Chr3:179653385 [GRCh38]
Chr3:179371173 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1547C>T (p.Ala516Val) single nucleotide variant Inborn genetic diseases [RCV003208699] Chr3:179745055 [GRCh38]
Chr3:179462843 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.376T>G (p.Leu126Val) single nucleotide variant Inborn genetic diseases [RCV003217037] Chr3:179701028 [GRCh38]
Chr3:179418816 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.628A>G (p.Lys210Glu) single nucleotide variant Inborn genetic diseases [RCV003200691] Chr3:179708780 [GRCh38]
Chr3:179426568 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1607G>A (p.Arg536His) single nucleotide variant Inborn genetic diseases [RCV003259416] Chr3:179745115 [GRCh38]
Chr3:179462903 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.1559C>G (p.Thr520Arg) single nucleotide variant Inborn genetic diseases [RCV003259453] Chr3:179745067 [GRCh38]
Chr3:179462855 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.741G>T (p.Glu247Asp) single nucleotide variant Inborn genetic diseases [RCV003214917] Chr3:179708893 [GRCh38]
Chr3:179426681 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_003940.3(USP13):c.959T>C (p.Ile320Thr) single nucleotide variant Inborn genetic diseases [RCV003371029] Chr3:179721460 [GRCh38]
Chr3:179439248 [GRCh37]
Chr3:3q26.33		 uncertain significance
Single allele duplication not provided [RCV003448680] Chr3:140154329..197847235 [GRCh37]
Chr3:3q23-29		 pathogenic
Single allele duplication not provided [RCV003448704] Chr3:176412210..197847235 [GRCh37]
Chr3:3q26.32-29		 pathogenic
GRCh37/hg19 3q26.33-27.2(chr3:179391972-185539073)x1 copy number loss not specified [RCV003986441] Chr3:179391972..185539073 [GRCh37]
Chr3:3q26.33-27.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2690
Count of miRNA genes:1188
Interacting mature miRNAs:1504
Transcripts:ENST00000263966, ENST00000482333, ENST00000496897, ENST00000497155, ENST00000497380
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D3S3565  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,481,937 - 179,482,096UniSTSGRCh37
Build 363180,964,631 - 180,964,790RGDNCBI36
Celera3177,912,863 - 177,913,022RGD
Cytogenetic Map3q26.2-q26.3UniSTS
HuRef3176,885,458 - 176,885,619UniSTS
Marshfield Genetic Map3191.79RGD
Marshfield Genetic Map3191.79UniSTS
Genethon Genetic Map3198.4UniSTS
deCODE Assembly Map3184.93UniSTS
GeneMap99-GB4 RH Map3672.56UniSTS
Whitehead-RH Map3820.5UniSTS
Whitehead-YAC Contig Map3 UniSTS
RH99087  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,506,767 - 179,506,903UniSTSGRCh37
Build 363180,989,461 - 180,989,597RGDNCBI36
Celera3177,937,693 - 177,937,829RGD
Cytogenetic Map3q26.2-q26.3UniSTS
HuRef3176,910,289 - 176,910,425UniSTS
GeneMap99-GB4 RH Map3676.22UniSTS
RH93958  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,503,743 - 179,503,862UniSTSGRCh37
Build 363180,986,437 - 180,986,556RGDNCBI36
Celera3177,934,669 - 177,934,788RGD
Cytogenetic Map3q26.2-q26.3UniSTS
HuRef3176,907,265 - 176,907,384UniSTS
GeneMap99-GB4 RH Map3679.36UniSTS
D3S2768E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,505,004 - 179,505,121UniSTSGRCh37
Build 363180,987,698 - 180,987,815RGDNCBI36
Celera3177,935,930 - 177,936,047RGD
Cytogenetic Map3q26.2-q26.3UniSTS
HuRef3176,908,526 - 176,908,643UniSTS
SHGC-132346  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,481,899 - 179,482,096UniSTSGRCh37
Build 363180,964,593 - 180,964,790RGDNCBI36
Celera3177,912,825 - 177,913,022RGD
Cytogenetic Map3q26.2-q26.3UniSTS
HuRef3176,885,420 - 176,885,619UniSTS
TNG Radiation Hybrid Map399897.0UniSTS
SHGC-132431  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,398,042 - 179,398,314UniSTSGRCh37
Build 363180,880,736 - 180,881,008RGDNCBI36
Celera3177,829,089 - 177,829,361RGD
Cytogenetic Map3q26.2-q26.3UniSTS
HuRef3176,801,827 - 176,802,099UniSTS
TNG Radiation Hybrid Map399875.0UniSTS
D3S4112  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,398,110 - 179,398,313UniSTSGRCh37
Build 363180,880,804 - 180,881,007RGDNCBI36
Celera3177,829,157 - 177,829,360RGD
Cytogenetic Map3q26.2-q26.3UniSTS
HuRef3176,801,895 - 176,802,098UniSTS
D3S3377  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,427,694 - 179,427,843UniSTSGRCh37
Build 363180,910,388 - 180,910,537RGDNCBI36
Celera3177,858,768 - 177,858,917RGD
Cytogenetic Map3q26.2-q26.3UniSTS
HuRef3176,831,520 - 176,831,669UniSTS
Whitehead-RH Map3822.9UniSTS
Whitehead-YAC Contig Map3 UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 96 902 1016 40 520 32 1731 1167 392 71 547 979 19 555 1096
Low 2334 1509 708 580 856 431 2625 1023 3329 343 910 634 155 1 649 1692 5
Below cutoff 6 580 2 2 575 2 7 13 5 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_003940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011513269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047449154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC007687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM138083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF457723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U75362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000263966   ⟹   ENSP00000263966
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,040 - 179,789,401 (+)Ensembl
RefSeq Acc Id: ENST00000482333
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,050 - 179,757,137 (+)Ensembl
RefSeq Acc Id: ENST00000496897   ⟹   ENSP00000417146
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,693 - 179,784,406 (+)Ensembl
RefSeq Acc Id: ENST00000497155   ⟹   ENSP00000420057
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,721,564 - 179,761,151 (+)Ensembl
RefSeq Acc Id: ENST00000497380   ⟹   ENSP00000418651
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,298 - 179,708,794 (+)Ensembl
RefSeq Acc Id: ENST00000602704   ⟹   ENSP00000506325
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,803,105 - 179,804,366 (+)Ensembl
RefSeq Acc Id: ENST00000679350   ⟹   ENSP00000506182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,040 - 179,708,957 (+)Ensembl
RefSeq Acc Id: ENST00000679403
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,729,403 - 179,730,260 (+)Ensembl
RefSeq Acc Id: ENST00000679407   ⟹   ENSP00000506653
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,765,695 - 179,789,817 (+)Ensembl
RefSeq Acc Id: ENST00000679602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,709,784 - 179,720,034 (+)Ensembl
RefSeq Acc Id: ENST00000679640
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,735,041 - 179,740,372 (+)Ensembl
RefSeq Acc Id: ENST00000679660   ⟹   ENSP00000506394
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,752,285 - 179,754,854 (+)Ensembl
RefSeq Acc Id: ENST00000679664
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,771,678 - 179,781,823 (+)Ensembl
RefSeq Acc Id: ENST00000679674   ⟹   ENSP00000505005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,781,739 - 179,795,717 (+)Ensembl
RefSeq Acc Id: ENST00000679694   ⟹   ENSP00000506562
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,706,934 - 179,730,260 (+)Ensembl
RefSeq Acc Id: ENST00000679749   ⟹   ENSP00000506138
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,124 - 179,708,957 (+)Ensembl
RefSeq Acc Id: ENST00000679752
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,757,557 - 179,789,373 (+)Ensembl
RefSeq Acc Id: ENST00000679768   ⟹   ENSP00000505147
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,745,043 - 179,764,168 (+)Ensembl
RefSeq Acc Id: ENST00000679769   ⟹   ENSP00000505559
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,765,695 - 179,781,823 (+)Ensembl
RefSeq Acc Id: ENST00000679772   ⟹   ENSP00000506406
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,784,048 - 179,795,717 (+)Ensembl
RefSeq Acc Id: ENST00000679783   ⟹   ENSP00000506120
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,706,934 - 179,730,260 (+)Ensembl
RefSeq Acc Id: ENST00000679839   ⟹   ENSP00000505324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,765,695 - 179,784,406 (+)Ensembl
RefSeq Acc Id: ENST00000679893   ⟹   ENSP00000505587
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,745,043 - 179,764,168 (+)Ensembl
RefSeq Acc Id: ENST00000679954   ⟹   ENSP00000506287
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,745,043 - 179,754,854 (+)Ensembl
RefSeq Acc Id: ENST00000679972
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,719,345 - 179,789,373 (+)Ensembl
RefSeq Acc Id: ENST00000680008   ⟹   ENSP00000506330
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,162 - 179,804,366 (+)Ensembl
RefSeq Acc Id: ENST00000680031   ⟹   ENSP00000505782
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,719,940 - 179,742,350 (+)Ensembl
RefSeq Acc Id: ENST00000680055   ⟹   ENSP00000505241
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,708,773 - 179,721,589 (+)Ensembl
RefSeq Acc Id: ENST00000680167   ⟹   ENSP00000506076
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,745,043 - 179,757,078 (+)Ensembl
RefSeq Acc Id: ENST00000680217   ⟹   ENSP00000505753
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,730,616 - 179,742,350 (+)Ensembl
RefSeq Acc Id: ENST00000680276   ⟹   ENSP00000504958
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,706,934 - 179,720,034 (+)Ensembl
RefSeq Acc Id: ENST00000680307   ⟹   ENSP00000505529
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,719,940 - 179,730,260 (+)Ensembl
RefSeq Acc Id: ENST00000680308   ⟹   ENSP00000505784
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,784,048 - 179,789,142 (+)Ensembl
RefSeq Acc Id: ENST00000680392
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,772,525 - 179,781,823 (+)Ensembl
RefSeq Acc Id: ENST00000680436   ⟹   ENSP00000506696
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,708,773 - 179,730,709 (+)Ensembl
RefSeq Acc Id: ENST00000680477   ⟹   ENSP00000505792
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,757,052 - 179,764,168 (+)Ensembl
RefSeq Acc Id: ENST00000680502   ⟹   ENSP00000506529
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,708,773 - 179,720,034 (+)Ensembl
RefSeq Acc Id: ENST00000680549   ⟹   ENSP00000506142
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,781,739 - 179,789,690 (+)Ensembl
RefSeq Acc Id: ENST00000680567
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,771,860 - 179,781,823 (+)Ensembl
RefSeq Acc Id: ENST00000680587   ⟹   ENSP00000506181
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,032 - 179,789,373 (+)Ensembl
RefSeq Acc Id: ENST00000680605   ⟹   ENSP00000504950
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,721,402 - 179,730,260 (+)Ensembl
RefSeq Acc Id: ENST00000680651   ⟹   ENSP00000506389
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,708,773 - 179,730,260 (+)Ensembl
RefSeq Acc Id: ENST00000680734   ⟹   ENSP00000506671
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,784,048 - 179,789,142 (+)Ensembl
RefSeq Acc Id: ENST00000680843   ⟹   ENSP00000505410
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,764,002 - 179,781,823 (+)Ensembl
RefSeq Acc Id: ENST00000680853   ⟹   ENSP00000505617
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,730,616 - 179,752,373 (+)Ensembl
RefSeq Acc Id: ENST00000680856
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,760,397 - 179,761,255 (+)Ensembl
RefSeq Acc Id: ENST00000680905   ⟹   ENSP00000506594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,761,112 - 179,765,848 (+)Ensembl
RefSeq Acc Id: ENST00000680930
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,681,708 - 179,682,003 (+)Ensembl
RefSeq Acc Id: ENST00000680951   ⟹   ENSP00000505008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,742,197 - 179,754,854 (+)Ensembl
RefSeq Acc Id: ENST00000681051   ⟹   ENSP00000506635
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,040 - 179,742,350 (+)Ensembl
RefSeq Acc Id: ENST00000681064   ⟹   ENSP00000506538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,040 - 179,707,076 (+)Ensembl
RefSeq Acc Id: ENST00000681081
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,781,739 - 179,782,381 (+)Ensembl
RefSeq Acc Id: ENST00000681098   ⟹   ENSP00000506157
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,761,112 - 179,765,848 (+)Ensembl
RefSeq Acc Id: ENST00000681109   ⟹   ENSP00000505085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,708,773 - 179,720,034 (+)Ensembl
RefSeq Acc Id: ENST00000681128   ⟹   ENSP00000506433
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,701,008 - 179,708,957 (+)Ensembl
RefSeq Acc Id: ENST00000681262   ⟹   ENSP00000505767
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,765,695 - 179,795,710 (+)Ensembl
RefSeq Acc Id: ENST00000681299   ⟹   ENSP00000506621
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,706,934 - 179,708,957 (+)Ensembl
RefSeq Acc Id: ENST00000681356
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,708,879 - 179,713,311 (+)Ensembl
RefSeq Acc Id: ENST00000681358   ⟹   ENSP00000505599
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,653,124 - 179,690,301 (+)Ensembl
RefSeq Acc Id: ENST00000681362   ⟹   ENSP00000505962
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,761,112 - 179,781,823 (+)Ensembl
RefSeq Acc Id: ENST00000681533
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,729,720 - 179,730,260 (+)Ensembl
RefSeq Acc Id: ENST00000681560   ⟹   ENSP00000505876
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,742,197 - 179,752,373 (+)Ensembl
RefSeq Acc Id: ENST00000681561
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,674,271 - 179,682,003 (+)Ensembl
RefSeq Acc Id: ENST00000681630   ⟹   ENSP00000505174
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,784,048 - 179,789,563 (+)Ensembl
RefSeq Acc Id: ENST00000681642   ⟹   ENSP00000505680
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,681,878 - 179,707,076 (+)Ensembl
RefSeq Acc Id: ENST00000681649   ⟹   ENSP00000505823
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,719,940 - 179,730,260 (+)Ensembl
RefSeq Acc Id: ENST00000681709
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,761,112 - 179,761,463 (+)Ensembl
RefSeq Acc Id: ENST00000681724
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,759,943 - 179,761,255 (+)Ensembl
RefSeq Acc Id: ENST00000681736   ⟹   ENSP00000505543
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,784,048 - 179,795,717 (+)Ensembl
RefSeq Acc Id: ENST00000681782
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,740,137 - 179,740,372 (+)Ensembl
RefSeq Acc Id: ENST00000681783   ⟹   ENSP00000504952
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,761,112 - 179,781,823 (+)Ensembl
RefSeq Acc Id: ENST00000681836
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,730,616 - 179,732,405 (+)Ensembl
RefSeq Acc Id: ENST00000681918   ⟹   ENSP00000505463
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,784,048 - 179,789,563 (+)Ensembl
RefSeq Acc Id: NM_003940   ⟹   NP_003931
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,653,040 - 179,789,401 (+)NCBI
GRCh373179,370,933 - 179,507,189 (+)RGD
Build 363180,853,635 - 180,984,675 (+)NCBI Archive
Celera3177,801,905 - 177,938,115 (+)RGD
HuRef3176,774,718 - 176,910,711 (+)ENTREZGENE
CHM1_13179,334,034 - 179,470,263 (+)NCBI
T2T-CHM13v2.03182,456,880 - 182,592,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011513269   ⟹   XP_011511571
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,653,040 - 179,789,401 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017007425   ⟹   XP_016862914
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,653,658 - 179,789,401 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017007426   ⟹   XP_016862915
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,653,040 - 179,789,401 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017007427   ⟹   XP_016862916
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,701,092 - 179,789,401 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047449154   ⟹   XP_047305110
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,653,040 - 179,789,401 (+)NCBI
RefSeq Acc Id: XM_054348286   ⟹   XP_054204261
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03182,456,880 - 182,592,926 (+)NCBI
RefSeq Acc Id: XM_054348287   ⟹   XP_054204262
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03182,457,498 - 182,592,926 (+)NCBI
RefSeq Acc Id: XM_054348288   ⟹   XP_054204263
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03182,456,880 - 182,592,926 (+)NCBI
RefSeq Acc Id: XM_054348289   ⟹   XP_054204264
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03182,456,880 - 182,592,926 (+)NCBI
RefSeq Acc Id: XM_054348290   ⟹   XP_054204265
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03182,504,786 - 182,592,926 (+)NCBI
Protein Sequences
Protein RefSeqs NP_003931 (Get FASTA)   NCBI Sequence Viewer  
  XP_011511571 (Get FASTA)   NCBI Sequence Viewer  
  XP_016862914 (Get FASTA)   NCBI Sequence Viewer  
  XP_016862915 (Get FASTA)   NCBI Sequence Viewer  
  XP_016862916 (Get FASTA)   NCBI Sequence Viewer  
  XP_047305110 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204261 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204262 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204263 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204264 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204265 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC63405 (Get FASTA)   NCBI Sequence Viewer  
  AAH16146 (Get FASTA)   NCBI Sequence Viewer  
  ADM34989 (Get FASTA)   NCBI Sequence Viewer  
  BAF83027 (Get FASTA)   NCBI Sequence Viewer  
  BAG63715 (Get FASTA)   NCBI Sequence Viewer  
  EAW78383 (Get FASTA)   NCBI Sequence Viewer  
  EAW78384 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000263966
  ENSP00000263966.3
  ENSP00000417146
  ENSP00000417146.1
  ENSP00000418651.1
  ENSP00000420057.1
  ENSP00000504950.1
  ENSP00000504952.1
  ENSP00000504958.1
  ENSP00000505005.1
  ENSP00000505008.1
  ENSP00000505085.1
  ENSP00000505147.1
  ENSP00000505174.1
  ENSP00000505241.1
  ENSP00000505324.1
  ENSP00000505410.1
  ENSP00000505463.1
  ENSP00000505529.1
  ENSP00000505543.1
  ENSP00000505559.1
  ENSP00000505587.1
  ENSP00000505599.1
  ENSP00000505617.1
  ENSP00000505680.1
  ENSP00000505753.1
  ENSP00000505767.1
  ENSP00000505782.1
  ENSP00000505784.1
  ENSP00000505792.1
  ENSP00000505823.1
  ENSP00000505876.1
  ENSP00000505962.1
  ENSP00000506076.1
  ENSP00000506120.1
  ENSP00000506138.1
  ENSP00000506142.1
  ENSP00000506157.1
  ENSP00000506181.1
  ENSP00000506182.1
  ENSP00000506287.1
  ENSP00000506325.1
  ENSP00000506330.1
  ENSP00000506389.1
  ENSP00000506394.1
  ENSP00000506406.1
  ENSP00000506433.1
  ENSP00000506529.1
  ENSP00000506538.1
  ENSP00000506562.1
  ENSP00000506594.1
  ENSP00000506621.1
  ENSP00000506635.1
  ENSP00000506653.1
  ENSP00000506671.1
  ENSP00000506696.1
GenBank Protein Q92995 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_003931   ⟸   NM_003940
- UniProtKB: D3DNS2 (UniProtKB/Swiss-Prot),   B4DYF3 (UniProtKB/Swiss-Prot),   A8K2S3 (UniProtKB/Swiss-Prot),   Q96B25 (UniProtKB/Swiss-Prot),   Q92995 (UniProtKB/Swiss-Prot),   A0A0A6YZ17 (UniProtKB/TrEMBL),   A0A7P0TAP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011511571   ⟸   XM_011513269
- Peptide Label: isoform X1
- UniProtKB: A0A7P0TAP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016862915   ⟸   XM_017007426
- Peptide Label: isoform X3
- UniProtKB: A0A7P0TAP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016862914   ⟸   XM_017007425
- Peptide Label: isoform X2
- UniProtKB: A0A7P0TAP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016862916   ⟸   XM_017007427
- Peptide Label: isoform X5
- UniProtKB: A0A7P0TAP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000417146   ⟸   ENST00000496897
RefSeq Acc Id: ENSP00000420057   ⟸   ENST00000497155
RefSeq Acc Id: ENSP00000418651   ⟸   ENST00000497380
RefSeq Acc Id: ENSP00000263966   ⟸   ENST00000263966
RefSeq Acc Id: ENSP00000506406   ⟸   ENST00000679772
RefSeq Acc Id: ENSP00000506120   ⟸   ENST00000679783
RefSeq Acc Id: ENSP00000505241   ⟸   ENST00000680055
RefSeq Acc Id: ENSP00000506389   ⟸   ENST00000680651
RefSeq Acc Id: ENSP00000505680   ⟸   ENST00000681642
RefSeq Acc Id: ENSP00000506138   ⟸   ENST00000679749
RefSeq Acc Id: ENSP00000506696   ⟸   ENST00000680436
RefSeq Acc Id: ENSP00000506182   ⟸   ENST00000679350
RefSeq Acc Id: ENSP00000506538   ⟸   ENST00000681064
RefSeq Acc Id: ENSP00000504952   ⟸   ENST00000681783
RefSeq Acc Id: ENSP00000506621   ⟸   ENST00000681299
RefSeq Acc Id: ENSP00000505410   ⟸   ENST00000680843
RefSeq Acc Id: ENSP00000505792   ⟸   ENST00000680477
RefSeq Acc Id: ENSP00000505005   ⟸   ENST00000679674
RefSeq Acc Id: ENSP00000506330   ⟸   ENST00000680008
RefSeq Acc Id: ENSP00000505559   ⟸   ENST00000679769
RefSeq Acc Id: ENSP00000506433   ⟸   ENST00000681128
RefSeq Acc Id: ENSP00000506653   ⟸   ENST00000679407
RefSeq Acc Id: ENSP00000504950   ⟸   ENST00000680605
RefSeq Acc Id: ENSP00000505587   ⟸   ENST00000679893
RefSeq Acc Id: ENSP00000505617   ⟸   ENST00000680853
RefSeq Acc Id: ENSP00000506671   ⟸   ENST00000680734
RefSeq Acc Id: ENSP00000506181   ⟸   ENST00000680587
RefSeq Acc Id: ENSP00000505147   ⟸   ENST00000679768
RefSeq Acc Id: ENSP00000505782   ⟸   ENST00000680031
RefSeq Acc Id: ENSP00000506076   ⟸   ENST00000680167
RefSeq Acc Id: ENSP00000505085   ⟸   ENST00000681109
RefSeq Acc Id: ENSP00000504958   ⟸   ENST00000680276
RefSeq Acc Id: ENSP00000505784   ⟸   ENST00000680308
RefSeq Acc Id: ENSP00000506394   ⟸   ENST00000679660
RefSeq Acc Id: ENSP00000505174   ⟸   ENST00000681630
RefSeq Acc Id: ENSP00000505463   ⟸   ENST00000681918
RefSeq Acc Id: ENSP00000506635   ⟸   ENST00000681051
RefSeq Acc Id: ENSP00000506157   ⟸   ENST00000681098
RefSeq Acc Id: ENSP00000506529   ⟸   ENST00000680502
RefSeq Acc Id: ENSP00000505324   ⟸   ENST00000679839
RefSeq Acc Id: ENSP00000506594   ⟸   ENST00000680905
RefSeq Acc Id: ENSP00000505876   ⟸   ENST00000681560
RefSeq Acc Id: ENSP00000506562   ⟸   ENST00000679694
RefSeq Acc Id: ENSP00000506287   ⟸   ENST00000679954
RefSeq Acc Id: ENSP00000505543   ⟸   ENST00000681736
RefSeq Acc Id: ENSP00000505767   ⟸   ENST00000681262
RefSeq Acc Id: ENSP00000506325   ⟸   ENST00000602704
RefSeq Acc Id: ENSP00000505753   ⟸   ENST00000680217
RefSeq Acc Id: ENSP00000505823   ⟸   ENST00000681649
RefSeq Acc Id: ENSP00000505529   ⟸   ENST00000680307
RefSeq Acc Id: ENSP00000505962   ⟸   ENST00000681362
RefSeq Acc Id: ENSP00000505008   ⟸   ENST00000680951
RefSeq Acc Id: ENSP00000506142   ⟸   ENST00000680549
RefSeq Acc Id: ENSP00000505599   ⟸   ENST00000681358
RefSeq Acc Id: XP_047305110   ⟸   XM_047449154
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054204261   ⟸   XM_054348286
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054204263   ⟸   XM_054348288
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054204264   ⟸   XM_054348289
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054204262   ⟸   XM_054348287
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054204265   ⟸   XM_054348290
- Peptide Label: isoform X5
Protein Domains
UBA   Ubiquitinyl hydrolase variant UBP zinc finger   UBP-type   USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q92995-F1-model_v2 AlphaFold Q92995 1-863 view protein structure

Promoters
RGD ID:6866354
Promoter ID:EPDNEW_H6342
Type:initiation region
Name:USP13_1
Description:ubiquitin specific peptidase 13 (isopeptidase T-3)
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6343  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,652,737 - 179,652,797EPDNEW
RGD ID:6866356
Promoter ID:EPDNEW_H6343
Type:initiation region
Name:USP13_2
Description:ubiquitin specific peptidase 13 (isopeptidase T-3)
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6342  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,653,040 - 179,653,100EPDNEW
RGD ID:6801916
Promoter ID:HG_KWN:46841
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_003940,   UC003FKF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 363180,853,131 - 180,854,097 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12611 AgrOrtholog
COSMIC USP13 COSMIC
Ensembl Genes ENSG00000058056 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000263966 ENTREZGENE
  ENST00000263966.8 UniProtKB/Swiss-Prot
  ENST00000496897 ENTREZGENE
  ENST00000496897.5 UniProtKB/Swiss-Prot
  ENST00000497155.1 UniProtKB/TrEMBL
  ENST00000497380.1 UniProtKB/TrEMBL
  ENST00000602704.2 UniProtKB/TrEMBL
  ENST00000679350.1 UniProtKB/TrEMBL
  ENST00000679407.1 UniProtKB/TrEMBL
  ENST00000679660.1 UniProtKB/TrEMBL
  ENST00000679674.1 UniProtKB/TrEMBL
  ENST00000679694.1 UniProtKB/TrEMBL
  ENST00000679749.1 UniProtKB/TrEMBL
  ENST00000679768.1 UniProtKB/TrEMBL
  ENST00000679769.1 UniProtKB/TrEMBL
  ENST00000679772.1 UniProtKB/TrEMBL
  ENST00000679783.1 UniProtKB/TrEMBL
  ENST00000679839.1 UniProtKB/TrEMBL
  ENST00000679893.1 UniProtKB/TrEMBL
  ENST00000679954.1 UniProtKB/TrEMBL
  ENST00000679972 ENTREZGENE
  ENST00000680008.1 UniProtKB/TrEMBL
  ENST00000680031.1 UniProtKB/TrEMBL
  ENST00000680055.1 UniProtKB/TrEMBL
  ENST00000680167.1 UniProtKB/TrEMBL
  ENST00000680217.1 UniProtKB/TrEMBL
  ENST00000680276.1 UniProtKB/TrEMBL
  ENST00000680307.1 UniProtKB/TrEMBL
  ENST00000680308.1 UniProtKB/TrEMBL
  ENST00000680436.1 UniProtKB/TrEMBL
  ENST00000680477.1 UniProtKB/TrEMBL
  ENST00000680502.1 UniProtKB/TrEMBL
  ENST00000680549.1 UniProtKB/TrEMBL
  ENST00000680587.1 UniProtKB/TrEMBL
  ENST00000680605.1 UniProtKB/TrEMBL
  ENST00000680651.1 UniProtKB/TrEMBL
  ENST00000680734.1 UniProtKB/TrEMBL
  ENST00000680843.1 UniProtKB/TrEMBL
  ENST00000680853.1 UniProtKB/TrEMBL
  ENST00000680905.1 UniProtKB/TrEMBL
  ENST00000680951.1 UniProtKB/TrEMBL
  ENST00000681051.1 UniProtKB/TrEMBL
  ENST00000681064.1 UniProtKB/TrEMBL
  ENST00000681098.1 UniProtKB/TrEMBL
  ENST00000681109.1 UniProtKB/TrEMBL
  ENST00000681128.1 UniProtKB/TrEMBL
  ENST00000681262.1 UniProtKB/TrEMBL
  ENST00000681299.1 UniProtKB/TrEMBL
  ENST00000681358.1 UniProtKB/TrEMBL
  ENST00000681362.1 UniProtKB/TrEMBL
  ENST00000681560.1 UniProtKB/TrEMBL
  ENST00000681630.1 UniProtKB/TrEMBL
  ENST00000681642.1 UniProtKB/TrEMBL
  ENST00000681649.1 UniProtKB/TrEMBL
  ENST00000681736.1 UniProtKB/TrEMBL
  ENST00000681783.1 UniProtKB/TrEMBL
  ENST00000681918.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cysteine proteinases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000058056 GTEx
HGNC ID HGNC:12611 ENTREZGENE
Human Proteome Map USP13 Human Proteome Map
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitinyl_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBP13_Znf-UBP_var UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_UBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:8975 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 8975 ENTREZGENE
OMIM 603591 OMIM
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-UBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-UBP_var UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37237 PharmGKB
PIRSF UBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_UBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_UBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF46934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YZ17 ENTREZGENE, UniProtKB/TrEMBL
  A0A7P0T849_HUMAN UniProtKB/TrEMBL
  A0A7P0T859_HUMAN UniProtKB/TrEMBL
  A0A7P0T863_HUMAN UniProtKB/TrEMBL
  A0A7P0T873_HUMAN UniProtKB/TrEMBL
  A0A7P0T8B2_HUMAN UniProtKB/TrEMBL
  A0A7P0T8G3_HUMAN UniProtKB/TrEMBL
  A0A7P0T8S4_HUMAN UniProtKB/TrEMBL
  A0A7P0T8Y7_HUMAN UniProtKB/TrEMBL
  A0A7P0T949_HUMAN UniProtKB/TrEMBL
  A0A7P0T979_HUMAN UniProtKB/TrEMBL
  A0A7P0T9F2_HUMAN UniProtKB/TrEMBL
  A0A7P0T9H6_HUMAN UniProtKB/TrEMBL
  A0A7P0T9J2_HUMAN UniProtKB/TrEMBL
  A0A7P0T9N7_HUMAN UniProtKB/TrEMBL
  A0A7P0T9Q1_HUMAN UniProtKB/TrEMBL
  A0A7P0T9S5_HUMAN UniProtKB/TrEMBL
  A0A7P0T9V0_HUMAN UniProtKB/TrEMBL
  A0A7P0T9X0_HUMAN UniProtKB/TrEMBL
  A0A7P0TA93_HUMAN UniProtKB/TrEMBL
  A0A7P0TA96_HUMAN UniProtKB/TrEMBL
  A0A7P0TAC6_HUMAN UniProtKB/TrEMBL
  A0A7P0TAJ4_HUMAN UniProtKB/TrEMBL
  A0A7P0TAJ9_HUMAN UniProtKB/TrEMBL
  A0A7P0TAM7_HUMAN UniProtKB/TrEMBL
  A0A7P0TAN6_HUMAN UniProtKB/TrEMBL
  A0A7P0TAP9 ENTREZGENE, UniProtKB/TrEMBL
  A0A7P0TAU4_HUMAN UniProtKB/TrEMBL
  A0A7P0TAV8_HUMAN UniProtKB/TrEMBL
  A0A7P0TB18_HUMAN UniProtKB/TrEMBL
  A0A7P0TB48_HUMAN UniProtKB/TrEMBL
  A0A7P0TB69_HUMAN UniProtKB/TrEMBL
  A0A7P0TB82_HUMAN UniProtKB/TrEMBL
  A0A7P0TB92_HUMAN UniProtKB/TrEMBL
  A0A7P0TBA7_HUMAN UniProtKB/TrEMBL
  A0A7P0TBD6_HUMAN UniProtKB/TrEMBL
  A0A7P0TBG5_HUMAN UniProtKB/TrEMBL
  A0A7P0TBN7_HUMAN UniProtKB/TrEMBL
  A0A7P0Z460_HUMAN UniProtKB/TrEMBL
  A0A7P0Z496_HUMAN UniProtKB/TrEMBL
  A0A7P0Z4C0_HUMAN UniProtKB/TrEMBL
  A0A7P0Z4J7_HUMAN UniProtKB/TrEMBL
  A0A7P0Z4M1_HUMAN UniProtKB/TrEMBL
  A0A7P0Z4P4_HUMAN UniProtKB/TrEMBL
  A0A7P0Z4R3_HUMAN UniProtKB/TrEMBL
  A8K2S3 ENTREZGENE
  B4DYF3 ENTREZGENE
  D3DNS2 ENTREZGENE
  H7C502_HUMAN UniProtKB/TrEMBL
  H7C5J3_HUMAN UniProtKB/TrEMBL
  Q92995 ENTREZGENE
  Q96B25 ENTREZGENE
  UBP13_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A8K2S3 UniProtKB/Swiss-Prot
  B4DYF3 UniProtKB/Swiss-Prot
  D3DNS2 UniProtKB/Swiss-Prot
  Q96B25 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-08 USP13  ubiquitin specific peptidase 13    ubiquitin specific peptidase 13 (isopeptidase T-3)  Symbol and/or name change 5135510 APPROVED