Pex5l (peroxisomal biogenesis factor 5-like) - Rat Genome Database

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Gene: Pex5l (peroxisomal biogenesis factor 5-like) Rattus norvegicus
Analyze
Symbol: Pex5l
Name: peroxisomal biogenesis factor 5-like
RGD ID: 708407
Description: Enables intracellularly cyclic nucleotide-activated monoatomic cation channel activity and small GTPase binding activity. Involved in positive regulation of corticotropin secretion; regulated exocytosis; and regulation of cAMP-mediated signaling. Located in cell tip and perinuclear region of cytoplasm. Part of intracellular cyclic nucleotide activated cation channel complex. Orthologous to human PEX5L (peroxisomal biogenesis factor 5 like); INTERACTS WITH 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: peroxin 2; peroxin-5-related protein; Pex2; PEX5-like protein; PEX5-related protein; pex5Rp; tetratricopeptide repeat-containing Rab8b-interacting protein; TPR-containing Rab8b-interacting protein; TRIP8b; Trjip8b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82117,623,199 - 117,836,772 (-)NCBIGRCr8
mRatBN7.22115,694,868 - 115,908,365 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2115,700,972 - 115,913,628 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2122,300,502 - 122,514,052 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02120,413,149 - 120,626,695 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02115,115,247 - 115,325,579 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02119,330,330 - 119,405,809 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2119,330,080 - 119,537,837 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02138,979,958 - 139,053,451 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42119,130,798 - 119,203,567 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12119,075,759 - 119,284,697 (-)NCBI
Celera2110,803,018 - 110,875,273 (-)NCBICelera
Cytogenetic Map2q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Rab8b and its interacting partner TRIP8b are involved in regulated secretion in AtT20 cells. Chen S, etal., J Biol Chem 2001 Apr 20;276(16):13209-16. Epub 2001 Jan 24.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Association with the auxiliary subunit PEX5R/Trip8b controls responsiveness of HCN channels to cAMP and adrenergic stimulation. Zolles G, etal., Neuron. 2009 Jun 25;62(6):814-25. doi: 10.1016/j.neuron.2009.05.008.
Additional References at PubMed
PMID:11463335   PMID:15564593   PMID:18346465   PMID:18620529   PMID:19439603   PMID:21504900   PMID:21749376   PMID:21795621   PMID:22363812   PMID:23382219   PMID:24451387   PMID:30053369  
PMID:31492750  


Genomics

Comparative Map Data
Pex5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82117,623,199 - 117,836,772 (-)NCBIGRCr8
mRatBN7.22115,694,868 - 115,908,365 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2115,700,972 - 115,913,628 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2122,300,502 - 122,514,052 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02120,413,149 - 120,626,695 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02115,115,247 - 115,325,579 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02119,330,330 - 119,405,809 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2119,330,080 - 119,537,837 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02138,979,958 - 139,053,451 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42119,130,798 - 119,203,567 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12119,075,759 - 119,284,697 (-)NCBI
Celera2110,803,018 - 110,875,273 (-)NCBICelera
Cytogenetic Map2q24NCBI
PEX5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383179,794,958 - 180,036,937 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3179,794,958 - 180,037,053 (-)EnsemblGRCh38hg38GRCh38
GRCh373179,512,746 - 179,754,725 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363181,000,744 - 181,237,211 (-)NCBINCBI36Build 36hg18NCBI36
Build 343181,000,751 - 181,237,219NCBI
Celera3177,948,972 - 178,186,430 (-)NCBICelera
Cytogenetic Map3q26.33NCBI
HuRef3176,916,268 - 177,158,948 (-)NCBIHuRef
CHM1_13179,475,820 - 179,718,112 (-)NCBICHM1_1
T2T-CHM13v2.03182,598,483 - 182,840,049 (-)NCBIT2T-CHM13v2.0
Pex5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39333,002,075 - 33,197,470 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl333,003,557 - 33,197,396 (-)EnsemblGRCm39 Ensembl
GRCm38332,947,926 - 33,143,302 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl332,949,408 - 33,143,247 (-)EnsemblGRCm38mm10GRCm38
MGSCv37332,848,553 - 33,042,004 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36333,142,161 - 33,274,578 (-)NCBIMGSCv36mm8
Celera332,856,737 - 33,053,168 (-)NCBICelera
Cytogenetic Map3A3NCBI
cM Map315.94NCBI
Pex5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554208,930,992 - 9,146,215 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554208,924,399 - 9,146,309 (-)NCBIChiLan1.0ChiLan1.0
PEX5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22177,660,144 - 177,901,817 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13177,664,861 - 177,906,523 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03176,823,918 - 177,065,528 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13184,993,866 - 185,238,100 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3184,999,947 - 185,237,645 (-)Ensemblpanpan1.1panPan2
PEX5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13413,187,814 - 13,502,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3413,187,807 - 13,416,827 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3417,339,445 - 17,585,549 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03413,085,931 - 13,400,886 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3413,048,375 - 13,315,162 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13413,131,125 - 13,451,357 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03413,113,787 - 13,433,984 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03413,359,766 - 13,675,044 (-)NCBIUU_Cfam_GSD_1.0
Pex5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602109,809,710 - 110,025,608 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365663,195,553 - 3,404,705 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365663,195,110 - 3,411,037 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13117,833,705 - 118,088,277 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113117,832,199 - 118,088,383 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213126,930,082 - 127,046,550 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PEX5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1159,373,826 - 9,613,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606318,228,983 - 18,472,873 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473057,504,302 - 57,762,999 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473057,504,554 - 57,763,423 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pex5l
870 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:9
Count of miRNA genes:8
Interacting mature miRNAs:9
Transcripts:ENSRNOT00000015200
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1354594Despr10Despair related QTL 100.00000249locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527143657569Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527143657569Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat

Markers in Region
BE121134  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22115,706,608 - 115,706,804 (+)MAPPERmRatBN7.2
Rnor_6.02119,335,930 - 119,336,125NCBIRnor6.0
Rnor_5.02138,985,558 - 138,985,753UniSTSRnor5.0
RGSC_v3.42119,136,655 - 119,136,850UniSTSRGSC3.4
Celera2110,808,619 - 110,808,814UniSTS
RH 3.4 Map2685.0UniSTS
Cytogenetic Map2q25UniSTS
AU046348  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22115,756,151 - 115,756,311 (+)MAPPERmRatBN7.2
Rnor_6.02119,387,583 - 119,387,742NCBIRnor6.0
Rnor_5.02139,035,225 - 139,035,384UniSTSRnor5.0
RGSC_v3.42119,185,341 - 119,185,500UniSTSRGSC3.4
Celera2110,857,047 - 110,857,206UniSTS
Cytogenetic Map2q25UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 29 7
Low 3 1 5 7 7 43 24 14 11 7
Below cutoff 32 22 12 15 12 1 4 2 8 18 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001393823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF324454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000015200   ⟹   ENSRNOP00000015200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2115,700,972 - 115,774,858 (-)Ensembl
Rnor_6.0 Ensembl2119,330,080 - 119,537,837 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097356   ⟹   ENSRNOP00000082985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2115,700,972 - 115,851,310 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098944   ⟹   ENSRNOP00000095922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2115,700,972 - 115,851,310 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105858   ⟹   ENSRNOP00000092235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2115,700,972 - 115,913,628 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107964   ⟹   ENSRNOP00000086465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2115,700,972 - 115,851,310 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113164   ⟹   ENSRNOP00000094803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2115,700,972 - 115,913,628 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000120122   ⟹   ENSRNOP00000087652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2115,700,972 - 115,913,628 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000120297   ⟹   ENSRNOP00000094453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2115,700,972 - 115,913,628 (-)Ensembl
RefSeq Acc Id: NM_001393823   ⟹   NP_001380752
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,685 (-)NCBI
mRatBN7.22115,694,868 - 115,908,365 (-)NCBI
RefSeq Acc Id: NM_001393824   ⟹   NP_001380753
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,685 (-)NCBI
mRatBN7.22115,694,868 - 115,908,365 (-)NCBI
RefSeq Acc Id: NM_001393825   ⟹   NP_001380754
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,685 (-)NCBI
mRatBN7.22115,694,868 - 115,908,365 (-)NCBI
RefSeq Acc Id: NM_001393826   ⟹   NP_001380755
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,685 (-)NCBI
mRatBN7.22115,694,868 - 115,908,365 (-)NCBI
RefSeq Acc Id: NM_001393827   ⟹   NP_001380756
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,779,582 (-)NCBI
mRatBN7.22115,694,868 - 115,851,264 (-)NCBI
RefSeq Acc Id: NM_001393828   ⟹   NP_001380757
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,779,582 (-)NCBI
mRatBN7.22115,694,868 - 115,851,264 (-)NCBI
RefSeq Acc Id: NM_001393829   ⟹   NP_001380758
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,779,582 (-)NCBI
mRatBN7.22115,694,868 - 115,851,264 (-)NCBI
RefSeq Acc Id: NM_001393830   ⟹   NP_001380759
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,779,582 (-)NCBI
mRatBN7.22115,694,868 - 115,851,264 (-)NCBI
RefSeq Acc Id: NM_001393831   ⟹   NP_001380760
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,779,582 (-)NCBI
mRatBN7.22115,694,868 - 115,851,264 (-)NCBI
RefSeq Acc Id: NM_173152   ⟹   NP_775175
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,685 (-)NCBI
mRatBN7.22115,694,868 - 115,908,365 (-)NCBI
Rnor_6.02119,330,330 - 119,405,809 (-)NCBI
Rnor_5.02138,979,958 - 139,053,451 (-)NCBI
RGSC_v3.42119,130,798 - 119,203,567 (-)RGD
Celera2110,803,018 - 110,875,273 (-)RGD
Sequence:
RefSeq Acc Id: XM_063281409   ⟹   XP_063137479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281410   ⟹   XP_063137480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281411   ⟹   XP_063137481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,777,034 (-)NCBI
RefSeq Acc Id: XM_063281412   ⟹   XP_063137482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281413   ⟹   XP_063137483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281415   ⟹   XP_063137485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,772 (-)NCBI
RefSeq Acc Id: XM_063281416   ⟹   XP_063137486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281417   ⟹   XP_063137487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,772 (-)NCBI
RefSeq Acc Id: XM_063281418   ⟹   XP_063137488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281419   ⟹   XP_063137489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281420   ⟹   XP_063137490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,772 (-)NCBI
RefSeq Acc Id: XM_063281421   ⟹   XP_063137491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,772 (-)NCBI
RefSeq Acc Id: XM_063281422   ⟹   XP_063137492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281423   ⟹   XP_063137493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281424   ⟹   XP_063137494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,772 (-)NCBI
RefSeq Acc Id: XM_063281426   ⟹   XP_063137496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,772 (-)NCBI
RefSeq Acc Id: XM_063281427   ⟹   XP_063137497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281428   ⟹   XP_063137498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281429   ⟹   XP_063137499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,836,772 (-)NCBI
RefSeq Acc Id: XM_063281430   ⟹   XP_063137500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,693,582 (-)NCBI
RefSeq Acc Id: XM_063281431   ⟹   XP_063137501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,693,582 (-)NCBI
RefSeq Acc Id: XM_063281432   ⟹   XP_063137502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,790,233 (-)NCBI
RefSeq Acc Id: XM_063281433   ⟹   XP_063137503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,632,884 - 117,790,240 (-)NCBI
RefSeq Acc Id: XM_063281434   ⟹   XP_063137504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,669,380 (-)NCBI
RefSeq Acc Id: XM_063281435   ⟹   XP_063137505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,623,199 - 117,663,405 (-)NCBI
RefSeq Acc Id: XM_063281436   ⟹   XP_063137506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82117,676,539 - 117,790,251 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001380752 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380753 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380754 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380755 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380756 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380757 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380758 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380759 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380760 (Get FASTA)   NCBI Sequence Viewer  
  NP_775175 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137479 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137480 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137481 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137482 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137483 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137485 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137486 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137487 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137488 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137489 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137490 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137491 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137492 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137493 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137494 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137496 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137497 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137498 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137499 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137500 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137501 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137502 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137503 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137504 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137505 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137506 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAK38580 (Get FASTA)   NCBI Sequence Viewer  
  EDM01213 (Get FASTA)   NCBI Sequence Viewer  
  EDM01214 (Get FASTA)   NCBI Sequence Viewer  
  EDM01215 (Get FASTA)   NCBI Sequence Viewer  
  EDM01216 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015200.4
  ENSRNOP00000082985
  ENSRNOP00000082985.1
  ENSRNOP00000086465
  ENSRNOP00000086465.1
  ENSRNOP00000087652
  ENSRNOP00000087652.1
  ENSRNOP00000092235
  ENSRNOP00000092235.1
  ENSRNOP00000094453
  ENSRNOP00000094453.1
  ENSRNOP00000094803.1
  ENSRNOP00000095922
  ENSRNOP00000095922.1
GenBank Protein Q925N3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_775175   ⟸   NM_173152
- Peptide Label: isoform 1
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6AHT0 (UniProtKB/TrEMBL),   A6IHR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000015200   ⟸   ENSRNOT00000015200
RefSeq Acc Id: ENSRNOP00000092235   ⟸   ENSRNOT00000105858
RefSeq Acc Id: ENSRNOP00000082985   ⟸   ENSRNOT00000097356
RefSeq Acc Id: ENSRNOP00000087652   ⟸   ENSRNOT00000120122
RefSeq Acc Id: ENSRNOP00000086465   ⟸   ENSRNOT00000107964
RefSeq Acc Id: ENSRNOP00000094453   ⟸   ENSRNOT00000120297
RefSeq Acc Id: ENSRNOP00000094803   ⟸   ENSRNOT00000113164
RefSeq Acc Id: ENSRNOP00000095922   ⟸   ENSRNOT00000098944
RefSeq Acc Id: NP_001380754   ⟸   NM_001393825
- Peptide Label: isoform 4
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6AGZ2 (UniProtKB/TrEMBL),   A6IHR5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380753   ⟸   NM_001393824
- Peptide Label: isoform 3
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380755   ⟸   NM_001393826
- Peptide Label: isoform 5
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380752   ⟸   NM_001393823
- Peptide Label: isoform 2
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6AHG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380759   ⟸   NM_001393830
- Peptide Label: isoform 9
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380757   ⟸   NM_001393828
- Peptide Label: isoform 7
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380758   ⟸   NM_001393829
- Peptide Label: isoform 8
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6A617 (UniProtKB/TrEMBL),   A6IHR7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380756   ⟸   NM_001393827
- Peptide Label: isoform 6
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6G884 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380760   ⟸   NM_001393831
- Peptide Label: isoform 6
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6G884 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137499   ⟸   XM_063281429
- Peptide Label: isoform X18
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137494   ⟸   XM_063281424
- Peptide Label: isoform X14
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137491   ⟸   XM_063281421
- Peptide Label: isoform X11
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6B1I9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137490   ⟸   XM_063281420
- Peptide Label: isoform X10
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137496   ⟸   XM_063281426
- Peptide Label: isoform X15
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137487   ⟸   XM_063281417
- Peptide Label: isoform X8
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137485   ⟸   XM_063281415
- Peptide Label: isoform X6
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137502   ⟸   XM_063281432
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063137498   ⟸   XM_063281428
- Peptide Label: isoform X17
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137497   ⟸   XM_063281427
- Peptide Label: isoform X16
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6AMT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137488   ⟸   XM_063281418
- Peptide Label: isoform X9
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137486   ⟸   XM_063281416
- Peptide Label: isoform X7
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137489   ⟸   XM_063281419
- Peptide Label: isoform X5
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6G884 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137493   ⟸   XM_063281423
- Peptide Label: isoform X13
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6A617 (UniProtKB/TrEMBL),   A6IHR7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137492   ⟸   XM_063281422
- Peptide Label: isoform X12
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137483   ⟸   XM_063281413
- Peptide Label: isoform X5
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot),   A0A8I6G884 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137482   ⟸   XM_063281412
- Peptide Label: isoform X4
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137480   ⟸   XM_063281410
- Peptide Label: isoform X2
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137479   ⟸   XM_063281409
- Peptide Label: isoform X1
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137481   ⟸   XM_063281411
- Peptide Label: isoform X3
- UniProtKB: Q925N3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137500   ⟸   XM_063281430
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063137501   ⟸   XM_063281431
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063137504   ⟸   XM_063281434
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063137505   ⟸   XM_063281435
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063137503   ⟸   XM_063281433
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063137506   ⟸   XM_063281436
- Peptide Label: isoform X22

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q925N3-F1-model_v2 AlphaFold Q925N3 1-602 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708407 AgrOrtholog
BioCyc Gene G2FUF-53414 BioCyc
Ensembl Genes ENSRNOG00000011211 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015200.5 UniProtKB/TrEMBL
  ENSRNOT00000097356 ENTREZGENE
  ENSRNOT00000097356.1 UniProtKB/TrEMBL
  ENSRNOT00000098944 ENTREZGENE
  ENSRNOT00000098944.1 UniProtKB/TrEMBL
  ENSRNOT00000105858 ENTREZGENE
  ENSRNOT00000105858.1 UniProtKB/TrEMBL
  ENSRNOT00000107964 ENTREZGENE
  ENSRNOT00000107964.1 UniProtKB/TrEMBL
  ENSRNOT00000113164.1 UniProtKB/TrEMBL
  ENSRNOT00000120122 ENTREZGENE
  ENSRNOT00000120122.1 UniProtKB/TrEMBL
  ENSRNOT00000120297 ENTREZGENE
  ENSRNOT00000120297.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PTS1R_family UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:286937 UniProtKB/Swiss-Prot
NCBI Gene 286937 ENTREZGENE
PANTHER PTHR10130 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10130:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TPR_16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pex5l PhenoGen
PROSITE TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011211 RatGTEx
SMART TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A617 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGZ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHT0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B1I9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G884 ENTREZGENE, UniProtKB/TrEMBL
  A6IHR5 ENTREZGENE, UniProtKB/TrEMBL
  A6IHR6 ENTREZGENE, UniProtKB/TrEMBL
  A6IHR7 ENTREZGENE, UniProtKB/TrEMBL
  F1LMT5_RAT UniProtKB/TrEMBL
  PEX5R_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-25 Pex5l  peroxisomal biogenesis factor 5-like  Pex2  peroxin 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Pex2  peroxin 2  Pex5l  peroxisomal biogenesis factor 5-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-12-27 Pex5l  peroxisomal biogenesis factor 5-like  Pex2  peroxin 2  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2004-09-10 Pex2  peroxin 2  Trjip8b  TPR-containing Rab8b-interacting protein  Symbol and Name updated 1299863 APPROVED