Gene: Ptx3 (pentraxin 3) Rattus norvegicus
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Symbol: Ptx3
Name: pentraxin 3
Description: Predicted to have several functions, including (1->3)-beta-D-glucan binding activity, complement component C1q binding activity, and identical protein binding activity; predicted to be involved in several processes, including extracellular matrix organization, innate immune response, and modification by host of symbiont morphology or physiology; predicted to localize to the extracellular matrix and extracellular space; orthologous to human PTX3 (pentraxin 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC689388; pentraxin 3, long; pentraxin related; pentraxin related gene; pentraxin-related protein PTX3; similar to Pentraxin-related protein PTX3 precursor (Pentaxin-related protein PTX3) (Tumor necrosis factor-inducible protein TSG-14)
Orthologs:
Homo sapiens (human) : PTX3 (pentraxin 3)  HGNC  Alliance
Mus musculus (house mouse) : Ptx3 (pentraxin related gene)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ptx3 (pentraxin 3)
Pan paniscus (bonobo/pygmy chimpanzee) : PTX3 (pentraxin 3)
Canis lupus familiaris (dog) : PTX3 (pentraxin 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ptx3 (pentraxin 3)
Sus scrofa (pig) : PTX3 (pentraxin 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02158,097,843 - 158,103,653 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02177,457,263 - 177,463,073 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42156,089,917 - 156,095,726 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2144,894,946 - 144,900,755 (+)NCBICelera
Cytogenetic Map2q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ptx3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1593476
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.