Gene: Snora47 (small nucleolar RNA, H/ACA box 47) Rattus norvegicus |
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Analyze |
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Symbol: |
Snora47 |
Name: |
small nucleolar RNA, H/ACA box 47 |
RGD ID: |
41122070 |
Description: |
INTERACTS WITH benzo[a]pyrene (ortholog); Benzo[k]fluoranthene (ortholog); bisphenol A (ortholog) |
Type: |
snorna
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RefSeq Status: |
MODEL |
Previously known as: |
LOC120101373; small nucleolar RNA SNORA47 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 28,328,995 - 28,329,132 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 26,594,260 - 26,594,397 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 26,594,260 - 26,594,397 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 2 | 25,046,212 - 25,046,349 (+) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 2 | q12 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
Snora47 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 28,328,995 - 28,329,132 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 26,594,260 - 26,594,397 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 26,594,260 - 26,594,397 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 2 | 25,046,212 - 25,046,349 (+) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 2 | q12 | NCBI | | | | |
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SNORA47 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 5 | 77,080,434 - 77,080,571 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 5 | 77,080,434 - 77,080,571 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 5 | 76,376,259 - 76,376,396 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 5 | 76,412,015 - 76,412,152 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 5 | 72,270,556 - 72,270,693 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | q13.3 | NCBI | | | | | HuRef | 5 | 71,582,892 - 71,583,029 (-) | NCBI | | HuRef | | | CHM1_1 | 5 | 75,809,660 - 75,809,797 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 5 | 77,562,066 - 77,562,203 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Snora47 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 13 | 95,467,119 - 95,467,244 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 13 | 95,467,108 - 95,467,245 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 13 | 95,330,611 - 95,330,736 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 13 | 95,330,600 - 95,330,737 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | Celera | 13 | 98,951,973 - 98,952,098 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | D1 | NCBI | | | | | cM Map | 13 | 49.39 | NCBI | | | | |
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LOC119871368 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Dog10K_Boxer_Tasha | 3 | 30,868,437 - 30,868,574 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 3 | 29,548,022 - 29,548,159 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 3 | 29,548,022 - 29,548,159 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 3 | 29,484,729 - 29,484,866 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 3 | 29,465,647 - 29,465,784 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 3 | 29,834,715 - 29,834,852 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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QTLs in Region (mRatBN7.2)
631682 | Bp115 | Blood pressure QTL 115 | 4.3 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 2 | 1 | 37410502 | Rat | 738010 | Lnnr3 | Liver neoplastic nodule remodeling QTL 3 | 2.94 | | liver integrity trait (VT:0010547) | liver remodeling tumorous lesion number (CMO:0001461) | 2 | 1 | 41244106 | Rat | 61355 | Bp36 | Blood pressure QTL 36 | 2.9 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 2 | 5873687 | 102844969 | Rat | 1600379 | Mcs18 | Mammary carcinoma susceptibility QTL 18 | 2.6 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 2 | 7887772 | 42804738 | Rat | 738012 | Anxrr3 | Anxiety related response QTL 3 | 3.8 | | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 2 | 9023519 | 54023519 | Rat | 10755430 | Coatc6 | Coat color QTL 6 | | 0.02576 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 2 | 11591100 | 56591100 | Rat | 1578664 | Bmd9 | Bone mineral QTL density 9 | 5 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 2 | 11852062 | 49003364 | Rat | 731184 | Mamtr4 | Mammary tumor resistance QTL 4 | | 0.0003 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 2 | 16491740 | 61491740 | Rat | 1357990 | Ael1 | Aortic elastin QTL 1 | 3.1 | 0.00091 | aorta elastin amount (VT:0003905) | aortic elastin | 2 | 19076825 | 64076825 | Rat | 731167 | Glom4 | Glomerulus QTL 4 | 2.4 | 0.0082 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) | 2 | 20304672 | 65304672 | Rat | 2300168 | Bmd47 | Bone mineral density QTL 47 | 6.6 | 0.0001 | femur mineral mass (VT:0010011) | bone mineral density (CMO:0001226) | 2 | 20662448 | 65662448 | Rat | 10402051 | Gdil2 | Gastrointestinal dilation QTL 2 | | | enteric ganglion morphology trait (VT:0001045) | length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836) | 2 | 24903853 | 74786777 | Rat | 1302794 | Stl27 | Serum triglyceride level QTL 27 | 4.4 | 0.0001 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 2 | 25413423 | 143657569 | Rat | 1358894 | Kidm24 | Kidney mass QTL 24 | 4.03 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 2 | 25413423 | 157142209 | Rat | 1358899 | Kidm23 | Kidney mass QTL 23 | 3.88 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 2 | 25413423 | 157142209 | Rat | 1358901 | Cm38 | Cardiac mass QTL 38 | 2 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 2 | 25413423 | 157142209 | Rat | 1358904 | Cm39 | Cardiac mass QTL 39 | 2.26 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 2 | 25413423 | 157142209 | Rat | 1358910 | Kidm27 | Kidney mass QTL 27 | 5.77 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 2 | 25413423 | 157142209 | Rat | 1358911 | Kidm28 | Kidney mass QTL 28 | 5.42 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 2 | 25413423 | 157142209 | Rat | 1358913 | Cm41 | Cardiac mass QTL 41 | 2.73 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 2 | 25413423 | 203928301 | Rat | 1358917 | Cm42 | Cardiac mass QTL 42 | 2.82 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 2 | 25413423 | 203928301 | Rat | 1358887 | Bw50 | Body weight QTL 50 | 2.39 | | body mass (VT:0001259) | body weight (CMO:0000012) | 2 | 25413652 | 157142078 | Rat | 1358908 | Bw49 | Body weight QTL 49 | 3.36 | | body mass (VT:0001259) | body weight (CMO:0000012) | 2 | 25413652 | 157142078 | Rat | |