Gene: Rnu6-180 (RNA, U6 small nuclear 180) Rattus norvegicus |
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Analyze |
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Symbol: |
Rnu6-180 |
Name: |
RNA, U6 small nuclear 180 |
RGD ID: |
40929069 |
Description: |
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Type: |
pseudo (Ensembl: snRNA)
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RefSeq Status: |
MODEL |
Previously known as: |
LOC120101190; U6; U6 spliceosomal RNA |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 29,959,152 - 29,959,250 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 28,224,523 - 28,224,621 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 28,224,523 - 28,224,621 (-) | NCBI | | mRatBN7.2 Ensembl | | | mRatBN7.2 Ensembl | 2 | 28,224,523 - 28,224,621 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 2 | 27,725,900 - 27,726,005 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 2 | q12 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
Rnu6-180 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 29,959,152 - 29,959,250 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 28,224,523 - 28,224,621 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 28,224,523 - 28,224,621 (-) | NCBI | | mRatBN7.2 Ensembl | | | mRatBN7.2 Ensembl | 2 | 28,224,523 - 28,224,621 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 2 | 27,725,900 - 27,726,005 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 2 | q12 | NCBI | | | | |
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RNU6-70P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 13 | 27,343,687 - 27,343,746 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 13 | 27,343,687 - 27,343,746 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 13 | 27,917,824 - 27,917,883 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 13 | q12.2 | NCBI | | | | | CHM1_1 | 13 | 27,886,065 - 27,886,124 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 13 | 26,564,449 - 26,564,508 (-) | NCBI | | T2T-CHM13v2.0 | | |
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LOC119871657 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Dog10K_Boxer_Tasha | 4 | 27,755,361 - 27,755,467 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 4 | 27,931,734 - 27,931,840 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 4 | 27,931,734 - 27,931,840 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 4 | 27,806,156 - 27,806,262 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 4 | 28,005,139 - 28,005,245 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 4 | 28,357,314 - 28,357,420 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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QTLs in Region (mRatBN7.2)
631682 | Bp115 | Blood pressure QTL 115 | 4.3 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 2 | 1 | 37410502 | Rat | 738010 | Lnnr3 | Liver neoplastic nodule remodeling QTL 3 | 2.94 | | liver integrity trait (VT:0010547) | liver remodeling tumorous lesion number (CMO:0001461) | 2 | 1 | 41244106 | Rat | 61355 | Bp36 | Blood pressure QTL 36 | 2.9 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 2 | 5873687 | 102844969 | Rat | 1600379 | Mcs18 | Mammary carcinoma susceptibility QTL 18 | 2.6 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 2 | 7887772 | 42804738 | Rat | 738012 | Anxrr3 | Anxiety related response QTL 3 | 3.8 | | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 2 | 9023519 | 54023519 | Rat | 10755430 | Coatc6 | Coat color QTL 6 | | 0.02576 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 2 | 11591100 | 56591100 | Rat | 1578664 | Bmd9 | Bone mineral QTL density 9 | 5 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 2 | 11852062 | 49003364 | Rat | 731184 | Mamtr4 | Mammary tumor resistance QTL 4 | | 0.0003 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 2 | 16491740 | 61491740 | Rat | 1357990 | Ael1 | Aortic elastin QTL 1 | 3.1 | 0.00091 | aorta elastin amount (VT:0003905) | aortic elastin | 2 | 19076825 | 64076825 | Rat | 731167 | Glom4 | Glomerulus QTL 4 | 2.4 | 0.0082 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) | 2 | 20304672 | 65304672 | Rat | 2300168 | Bmd47 | Bone mineral density QTL 47 | 6.6 | 0.0001 | femur mineral mass (VT:0010011) | bone mineral density (CMO:0001226) | 2 | 20662448 | 65662448 | Rat | 10402051 | Gdil2 | Gastrointestinal dilation QTL 2 | | | enteric ganglion morphology trait (VT:0001045) | length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836) | 2 | 24903853 | 74786777 | Rat | 1302794 | Stl27 | Serum triglyceride level QTL 27 | 4.4 | 0.0001 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 2 | 25413423 | 143657569 | Rat | 1358894 | Kidm24 | Kidney mass QTL 24 | 4.03 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 2 | 25413423 | 157142209 | Rat | 1358899 | Kidm23 | Kidney mass QTL 23 | 3.88 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 2 | 25413423 | 157142209 | Rat | 1358901 | Cm38 | Cardiac mass QTL 38 | 2 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 2 | 25413423 | 157142209 | Rat | 1358904 | Cm39 | Cardiac mass QTL 39 | 2.26 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 2 | 25413423 | 157142209 | Rat | 1358910 | Kidm27 | Kidney mass QTL 27 | 5.77 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 2 | 25413423 | 157142209 | Rat | 1358911 | Kidm28 | Kidney mass QTL 28 | 5.42 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 2 | 25413423 | 157142209 | Rat | 1358913 | Cm41 | Cardiac mass QTL 41 | 2.73 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 2 | 25413423 | 203928301 | Rat | 1358917 | Cm42 | Cardiac mass QTL 42 | 2.82 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 2 | 25413423 | 203928301 | Rat | 1358887 | Bw50 | Body weight QTL 50 | 2.39 | | body mass (VT:0001259) | body weight (CMO:0000012) | 2 | 25413652 | 157142078 | Rat | 1358908 | Bw49 | Body weight QTL 49 | 3.36 | | body mass (VT:0001259) | body weight (CMO:0000012) | 2 | 25413652 | 157142078 | Rat | 1354617 | Bp240 | Blood pressure QTL 240 | 4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 2 | 26917817 | 81754745 | Rat | 1354617 | Bp240 | Blood pressure QTL 240 | 4 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 2 | 26917817 | 81754745 | Rat | 1354617 | Bp240 | Blood pressure QTL 240 | 4 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 2 | 26917817 | 81754745 | Rat | 1354603 | Bp243 | Blood pressure QTL 243 | 3.9 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 2 | 26917817 | 127469484 | Rat | 2290453 | Scl55 | Serum cholesterol level QTL 55 | 2.83 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 2 | 26917817 | 136917119 | Rat | 1331764 | Bp205 | Blood pressure QTL 205 | 3.476 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 2 | 26999571 | 43154682 | Rat | 1643006 | Pain1 | Pain QTL 1 | 3.63 | 0.005 | mechanical nociception trait (VT:0002734) | self mutilation severity score (CMO:0002145) | 2 | 26999571 | 48268661 | Rat | 9590095 | Sffal3 | Serum free fatty acids level QTL 3 | 6.78 | 0.001 | blood free fatty acid amount (VT:0001553) | plasma free fatty acids level (CMO:0000546) | 2 | 27157160 | 72157160 | Rat | |
Expression
Sequence
RefSeq Acc Id: |
ENSRNOT00000078781 |
Type: |
CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 Ensembl | 2 | 28,224,523 - 28,224,621 (-) | Ensembl |
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2022-07-05 |
Rnu6-180 |
RNA, U6 small nuclear 180 |
LOC120101190 |
U6 spliceosomal RNA |
Nomenclature updated to reflect human and mouse nomenclature |
1299863 |
APPROVED |
2022-06-02 |
LOC120101190 |
U6 spliceosomal RNA |
U6 |
U6 spliceosomal RNA |
Data merged from RGD:15013839 |
737654 |
PROVISIONAL |
2021-01-26 |
LOC120101190 |
U6 spliceosomal RNA |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
2019-11-08 |
U6 |
U6 spliceosomal RNA |
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Symbol and Name status set to provisional |
45752 |
PROVISIONAL |
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