Mtmr12 (myotubularin related protein 12)

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Gene: Mtmr12 (myotubularin related protein 12) Rattus norvegicus

Analyze

Symbol:

Mtmr12

Name:

myotubularin related protein 12

RGD ID:

1307902

Description:

Predicted to have phosphatidylinositol-3-phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation and toxin transport. Predicted to localize to cytoplasm and membrane. Orthologous to human MTMR12 (myotubularin related protein 12); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; 1,2-dimethylhydrazine (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

inactive phosphatidylinositol 3-phosphatase 12; LOC310155; MGC109012; myotubularin-related protein 12; phosphatidylinositol 3-phosphatase-associated protein; phosphatidylinositol-3-phosphatase associated protein; phosphatidylinositol-3-phosphatase-associated protein; Pip3ap

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MTMR12 (myotubularin related protein 12)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mtmr12 (myotubularin related protein 12)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Mtmr12 (myotubularin related protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MTMR12 (myotubularin related protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MTMR12 (myotubularin related protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mtmr12 (myotubularin related protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MTMR12 (myotubularin related protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	MTMR12 (myotubularin related protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mtmr12 (myotubularin related protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MTMR12 (myotubularin related protein 12)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Mtmr12 (myotubularin related protein 12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	mtmr12 (myotubularin related protein 12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG14411	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	Y48G1C.10	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	61,223,714 - 61,293,266 (+)	NCBI
Rnor_6.0 Ensembl	2	62,236,577 - 62,303,919 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	62,236,497 - 62,305,995 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	82,383,865 - 82,452,904 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	61,665,059 - 61,729,291 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	61,593,291 - 61,657,523 (+)	NCBI
Celera	2	57,406,567 - 57,470,784 (-)	NCBI		Celera
Cytogenetic Map	2	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B2 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

doxorubicin (ISO)

indometacin (ISO)

monosodium L-glutamate (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

phosphatidylinositol dephosphorylation (IBA)

regulation of catalytic activity (IEA)

toxin transport (ISO)

Cellular Component

cytoplasm (ISO)

sarcomere (IEA)

sarcoplasmic reticulum (IEA)

Molecular Function

phosphatase regulator activity (IEA)

phosphatidylinositol-3-phosphatase activity (IBA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16787938	PMID:23716698	PMID:30053369

Genomics

Comparative Map Data

Mtmr12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	61,223,714 - 61,293,266 (+)	NCBI
Rnor_6.0 Ensembl	2	62,236,577 - 62,303,919 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	62,236,497 - 62,305,995 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	82,383,865 - 82,452,904 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	61,665,059 - 61,729,291 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	61,593,291 - 61,657,523 (+)	NCBI
Celera	2	57,406,567 - 57,470,784 (-)	NCBI		Celera
Cytogenetic Map	2	q16	NCBI

MTMR12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	5	32,226,994 - 32,312,987 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	5	32,227,007 - 32,312,939 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	5	32,227,113 - 32,313,045 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	32,262,868 - 32,348,871 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	5	32,262,868 - 32,348,832	NCBI
Celera	5	32,108,592 - 32,194,879 (-)	NCBI
Cytogenetic Map	5	p13.3	NCBI
HuRef	5	32,194,163 - 32,280,094 (-)	NCBI		HuRef
CHM1_1	5	32,228,745 - 32,314,719 (-)	NCBI		CHM1_1

Mtmr12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	12,205,056 - 12,272,326 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	15	12,205,114 - 12,274,582 (+)	Ensembl
GRCm38	15	12,204,970 - 12,272,240 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	12,205,028 - 12,274,496 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	12,134,849 - 12,201,995 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	15	12,149,819 - 12,216,965 (+)	NCBI			mm8
Celera	15	12,009,814 - 12,051,732 (+)	NCBI		Celera
Cytogenetic Map	15	A1	NCBI

Mtmr12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	18,093,843 - 18,146,148 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955426	18,093,843 - 18,152,013 (-)	NCBI	ChiLan1.0	ChiLan1.0

MTMR12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	83,404,193 - 83,489,556 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	83,419,703 - 83,490,944 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	78,021,379 - 78,107,029 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

MTMR12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	75,166,758 - 75,220,084 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	75,146,379 - 75,217,730 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	74,784,080 - 74,857,834 (+)	NCBI
ROS_Cfam_1.0	4	75,667,297 - 75,740,673 (+)	NCBI
UMICH_Zoey_3.1	4	75,404,241 - 75,477,740 (+)	NCBI
UNSW_CanFamBas_1.0	4	75,533,312 - 75,606,674 (+)	NCBI
UU_Cfam_GSD_1.0	4	76,063,656 - 76,137,018 (+)	NCBI

Mtmr12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	222,837,256 - 222,916,192 (-)	NCBI
SpeTri2.0	NW_004936518	8,455,669 - 8,534,583 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MTMR12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	18,461,129 - 18,537,908 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	18,461,120 - 18,537,893 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

MTMR12
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	31,515,499 - 31,602,391 (-)	NCBI
ChlSab1.1 Ensembl	4	31,513,721 - 31,602,256 (-)	Ensembl
Vero_WHO_p1.0	NW_023666071	21,742,848 - 21,829,471 (-)	NCBI

Mtmr12
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624759	22,233,633 - 22,305,715 (+)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42776916	169852800	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42776916	195645082	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	60325352	147522851	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	40171834	105089682	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	40171834	105089682	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	40171834	105089682	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	40171834	105089682	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	40171834	105089682	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight as a percentage of body weight (CMO:0000654)	2	43149788	85642672	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46537589	217498710	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43133606	217498545	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43133606	217498545	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56244671	217498710	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42776916	217498710	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42776916	217498710	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	57715603	78466260	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	20276981	65276981	Rat
631500	Bp99	Blood pressure QTL 99	2.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	60325686	105059293	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	42776916	62238534	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	23837491	149614623	Rat
2300168	Bmd47	Bone mineral density QTL 47	6.6	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	2	20641371	65641371	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43141290	154583160	Rat
2293676	Bmd19	Bone mineral density QTL 19	10.7	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	43141290	114164944	Rat
2293682	Bmd24	Bone mineral density QTL 24	8.9	0.0001	femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	2	43141290	114164944	Rat
1578777	Stresp15	Stress response QTL 15	2	0.05	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	2	61924251	106924251	Rat
1578671	Bmd10	Bone mineral density QTL 10	5.4		femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	2	9444679	68866454	Rat
1354592	Rf50	Renal function QTL 50	3.5		urine output (VT:0003620)	timed urine volume (CMO:0000260)	2	54436698	75687607	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43149788	198704485	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26186097	135654963	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26186097	83819822	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	26186097	83819822	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	26186097	83819822	Rat
1558648	Smcn1	Smooth muscle cell number QTL 1		0.039	blood vessel smooth muscle cell quantity (VT:0010525)	aorta smooth muscle cell count per unit vessel length (CMO:0001646)	2	60131410	135646395	Rat
1357990	Ael1	Aortic elastin QTL 1	3.1	0.00091	aorta elastin amount (VT:0003905)	aortic elastin	2	19016465	64016465	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26186097	142053534	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	36245223	112175725	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	23837719	169852670	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	169852800	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	169852800	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	23837719	169852670	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	218957222	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	218957222	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	3127638	105149020	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	34088175	91101903	Rat
5684990	Bmd82	Bone mineral density QTL 82	2.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	2	60325352	106432915	Rat
5684996	Bmd85	Bone mineral density QTL 85	4.7	0.024	tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	2	60325352	106432915	Rat
6480225	Gdil1	Gastrointestinal dilation QTL 1			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	58344100	75687607	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	27760301	72760301	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	22612952	67612952	Rat
10402051	Gdil2	Gastrointestinal dilation QTL 2			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	23280647	75687607	Rat
12879843	Am3	Aortic mass QTL 3		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	27161361	148295267	Rat
12879841	Cm87	Cardiac mass QTL 87		0.026	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	27161361	148295267	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	16679272	245624402	Rat
12879844	Kidm62	Kidney mass QTL 62		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27161361	148295267	Rat
10755434	Coatc7	Coat color QTL 7		0.04794	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	31272379	76272379	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	35133202	80133202	Rat
12879842	Cm88	Cardiac mass QTL 88		0.042	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	27161361	148295267	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	67
Count of miRNA genes:	53
Interacting mature miRNAs:	60
Transcripts:	ENSRNOT00000036633
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	30	36	20	19	20	1	1	72	35	40	11	1
Low		13	21	21		21	7	10	2		1		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000036633 ⟹ ENSRNOP00000036677

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	62,236,577 - 62,303,919 (+)	Ensembl

RefSeq Acc Id:

NM_001012077 ⟹ NP_001012077

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	61,223,866 - 61,288,097 (+)	NCBI
Rnor_6.0	2	62,236,590 - 62,300,822 (+)	NCBI
Rnor_5.0	2	82,383,865 - 82,452,904 (-)	NCBI
RGSC_v3.4	2	61,665,059 - 61,729,291 (+)	RGD
Celera	2	57,406,567 - 57,470,784 (-)	RGD

Sequence:

show sequence

CGCCACTGCCGGAACCTGAGCCGGAGCCGCCGCCTCTGCCGCCGCGCGTCGTTGCTTCGCAAGG
CGGCGGAATGCTGGGGAAAGGGGGAGTCGGCGGTGGCGGCGGCACCAAGGCGCCCAAGCCCTCC
TTCGTGTCGTACGTGCGCCCTGAGGAAATTCACACAAATGAGAAGGAAGTAACAGAGAAGGAGG
AAGTCACTCTTCACTTGTTGCCAGGTGAACAACTGCTCTGTGAAGCCAGCACGGTCCTGAAGTA
TGTGCAGGAGGACTCTTGTCAGCTTGGTATCTGTGGGAGGCTCGTCTGCACCGACTTCAGAATC
TCCTTCCTGGGGGATGAAGGCTCGGCTGTGGATAATGGGGCGGAAACTCATTTTAAGAATAAGA
TCATAGGAGTAAATGACATTCCACTCCACTGTGTGGATCAGATTTATGGAGTGTTTGATGAGAA
AAAAAAACCTCTGTTTGGACAACTGAAGAAATACCCTGAGAAGCTTGTTATCCATTGCAAAGAC
CTGCGGGTGCTCCACTTCTGTCTGAGGTACACAAAGGAGGAGGAAGTCAAAAGGATTGTCAGTG
GCATAATCCATCATACCCAGAGTCCCAAACTGCTGAAAAGACTGTTTCTGTTTTCCTACGCAGC
TGCTGTGCATGGCACAGCTGCTGACCCCAGGAACTGTACCGTAATGTTTGACACACCCAAAGAC
TGGTGCTGGGAGCTGGAGCGGACCAAGGGGAGTGTGAAGTACAAAACAGTGAGTGTGAATGAAG
GCTACAGAGTCTGTGACAGGTTGCCGGCATACTTTGTTGTCCCCACTCCCCTTCTCGAAGACGA
TGTGAAGCGTTTTCAGGGCCGTGGCATACCAATCTGGTGTTGGTCCTGTCACAATGGAAGTGCC
CTTCTGAAAATGTCAGCACTGCCCAAAGAACAGGATGACAGTGCTTTGCAAATTCAGAAGAGCT
TCTTGGATGGAATTTACAAGACTATCCACAGGCCACCCTACGAAATGGTTAAAACGGAAGACTT
GTCAAGCAACTTCCTTTCCCTACAGGAGATCCAGAGTTCATACTGTAAATTTAAGCAGCTGTTT
CTGATAGATAGCAGTTCAGAATTTTGGGACACAGATGTAAAGTGGTTTTCTCTCTTAGAAAGCA
GCGGCTGGCTGGATATAATCAGACGCTGCCTGAAGAGAGCAATAGAGATTATAGAATGCCTGGA
AGCGCAGAACATGAACGTCCTCCTCTTGGAAGAGAACGCTTCTGATCTCTGCTGCCTCCTATCA
TCTCTGGTGCAAGTGATGATGGATGCCCACTGTCGAACCTGGACTGGGTTTCAGAGCCTCATCC
AAAAGGAGTGGGTCATGGGTGGCCACTCTTTTTTGGACCGCTGTAACCATCTCCACCAGAGCGA
CAAAGAGGAGGTCCCTGTGTTCCTGCTTTTCTTGGACTGTGTCTGGCAACTGGTGCACCAGCAT
CCCCCGGCATTTGAGTTCACAGAGACATACCTGACTGTTCTGTCAGATAGCCTGTATATACCTA
TTTTTAGCACCTTCTTCTTCAATTCACCTCATCAAAAAGATACTAACATGGGCAGGGAGAGCCT
GGATGCACAAAGCAAGCCTTTGACGCTGCTCACCGTGTGGGATTGGTCAGTACAGTTTGAACCC
AAAGCACAGACTTTGCTCAGAAACCCTCTTTATGTGGAAAAGCCAAAACTGGACAAAGGCCAGC
GGAAAGGATCACGTTTCAAAGTAAGATGTGCTGTCTTAACCCCACCCCACCCCCATCTCCACCA
GCTCCTCCATCCTGTATATGTGAGGACAAAGGCCACTTTATGAATCTCTCTGTGGGTGTGTTAC
CTCTTCCTATGGCCTGCAGTTGGGATCTGTGGTTCTCAGGTTATTGATAAGACATGTCACTGAG
ACTGCTGTGGCTGTGGCTGTGCTGCTATGCATGGAATTGCACCTCTTACCTGTCTCCGTGTGTG
GCTGGTAGATAAGGGGGTGTTGATTAGGAAGGGTTACCACTCATTTGCCAGTTCATAGGTTTCA
TAGCAAGACCTTGTCTTTGTTTTTAATAAAAACTTTACTATTTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232046 ⟹ XP_006232108

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	61,223,768 - 61,293,266 (+)	NCBI
Rnor_6.0	2	62,236,498 - 62,305,995 (+)	NCBI
Rnor_5.0	2	82,383,865 - 82,452,904 (-)	NCBI

Sequence:

show sequence

CGGTGTAAGCGGCGGAGCCGGATGCGGGCGGTACTGCCGCTGCCGCGGCCCTAGGGATGGGCGG
AGCCCCGGCCGCTGGTGCTGGTGGCCGCCGCCACTGCCGGAACCTGAGCCGGAGCCGCCGCCTC
TGCCGCCGCGCGTCGTTGCTTCGCAAGGCGGCGGAATGCTGGGGAAAGGGGGAGTCGGCGGTGG
CGGCGGCACCAAGGCGCCCAAGCCCTCCTTCGTGTCGTACGTGCGCCCTGAGGAAATTCACACA
AATGAGAAGGAAGTAACAGAGAAGGAGGAAGTCACTCTTCACTTGTTGCCAGGTGAACAACTGC
TCTGTGAAGCCAGCACGGTCCTGAAGTATGTGCAGGAGGACTCTTGTCAGCTTGGTATCTGTGG
GAGGCTCGTCTGCACCGACTTCAGAATCTCCTTCCTGGGGGATGAAGGCTCGGCTGTGGATAAT
GGGGCGGAAACTCATTTTAAGAATAAGATCATAGGAGTAAATGACATTCCACTCCACTGTGTGG
ATCAGATTTATGGAGTGTTTGATGAGAAAAAAAAACCTCTGTTTGGACAACTGAAGAAATACCC
TGAGAAGCTTGTTATCCATTGCAAAGACCTGCGGGTGCTCCACTTCTGTCTGAGGTACACAAAG
GAGGAGGAAGTCAAAAGGATTGTCAGTGGCATAATCCATCATACCCAGAGTCCCAAACTGCTGA
AAAGACTGTTTCTGTTTTCCTACGCAGCTGCTGTGCATGGCACAGCTGCTGACCCCAGGAACTG
TACCGTAATGTTTGACACACCCAAAGACTGGTGCTGGGAGCTGGAGCGGACCAAGGGGAGTGTG
AAGTACAAAACAGTGAGTGTGAATGAAGGCTACAGAGTCTGTGACAGGTTGCCGGCATACTTTG
TTGTCCCCACTCCCCTTCTCGAAGACGATGTGAAGCGTTTTCAGGGCCGTGGCATACCAATCTG
GTGTTGGTCCTGTCACAATGGAAGTGCCCTTCTGAAAATGTCAGCACTGCCCAAAGAACAGGAT
GACAGTGCTTTGCAAATTCAGAAGAGCTTCTTGGATGGAATTTACAAGACTATCCACAGGCCAC
CCTACGAAATGGTTAAAACGGAAGACTTGTCAAGCAACTTCCTTTCCCTACAGGAGATCCAGAG
TTCATACTGTAAATTTAAGCAGCTGTTTCTGATAGATAGCAGTTCAGAATTTTGGGACACAGAT
GTAAAGTGGTTTTCTCTCTTAGAAAGCAGCGGCTGGCTGGATATAATCAGACGCTGCCTGAAGA
GAGCAATAGAGATTATAGAATGCCTGGAAGCGCAGAACATGAACGTCCTCCTCTTGGAAGAGAA
CGCTTCTGATCTCTGCTGCCTCCTATCATCTCTGGTGCAAGTGATGATGGATGCCCACTGTCGA
ACCTGGACTGGGTTTCAGAGCCTCATCCAAAAGGAGTGGGTCATGGGTGGCCACTCTTTTTTGG
ACCGCTGTAACCATCTCCACCAGAGCGACAAAGAGGAGGTCCCTGTGTTCCTGCTTTTCTTGGA
CTGTGTCTGGCAACTGGTGCACCAGCATCCCCCGGCATTTGAGTTCACAGAGACATACCTGACT
GTTCTGTCAGATAGCCTGTATATACCTATTTTTAGCACCTTCTTCTTCAATTCACCTCATCAAA
AAGATACTAACATGGGCAGGGAGAGCCTGGATGCACAAAGCAAGCCTTTGACGCTGCTCACCGT
GTGGGATTGGTCAGTACAGTTTGAACCCAAAGCACAGACTTTGCTCAGAAACCCTCTTTATGTG
GAAAAGCCAAAACTGGACAAAGGCCAGCGGAAAGGATCACGTTTCAAACATCAACGACAACTTT
CTTTGCCACTTACCCAGTCTAAGTCATCTCCCAAAAGAGGATTTTTCAGAGAAGAAACGGATCA
TTTAATCAAAAACCTTCTAGGCAAGAGAATTAGTAAACTTATTAACTCTTCCGATGATCTCCAG
GACAACTCTCGAGAGTTCTATGACAACTGGCATAGTAAGCCCACAGACTACCATGGCTTGTTGT
TGCCTCACATTGAGGGGCCTGAAATCAAGGTGTGGGCTCAGCGCTATTTACGTTGGATTCCAGA
AGCCCAAATCCTGGGTGGTGGCAGAGTGGCCACTATGGGCAAACTCTTGGAAATGATGGAGGAA
GTGCAGAGCTTACAGGAGAAAATAGAGGCAAGGCATCACAGACAGGAGGCTATCCACGTACAGG
CGCCTGGCCTGCTCAGGAACTCTGCCCGCCTGTCTTCCCTGTTCCCCTTTGCAATGCACCAGCG
ACATTCAGCCAAGCCTGTCTTACCCACCAGTGGCTGGAAAGCTTTGGGAGGTGAAGATGACCTG
GCCAAACGAGAAGATGAGTTTGTGGACCTAGGGGACGTGTGACTCTCTTCTCAGGGACTGTGAA
AGAGGCACACTGTACGGTGGGACAATTGTTCCTGGACTGGTGTCACGATGTTAGCTCAGTGCTG
TGAAGGAGAGAGCAGGGCTTTCAGGAAGAGAGCTGGTTCTCCTTTTCTTCCACAGTTCTGGAAG
ACAGCGCAACAAAGCCATGCCTCTAGGATGCATAGGAGGGAGTTCCTACTTGACCTGTCATAGG
ATTGGGGTCATTTCCTGACATCTGTATTATATGTACACACAATGGCTCGTGGCCAGGCTGCTGT
GAGAGCCTCCTGATTTCTCTGTGCCAAGATAATTACATAGCCATTTCGAACAAGAGTAAGGGCA
GCTTTATGCGGCATCTAAGTGGAGAGACAGAGGATTAAGAGATGTGCTTTGTCTTAAACCATAT
TCCAGCGTGCACACACACACATGCACGCACCACAGAAAAGTTGACAGTTCTTCTGGTGTCATCC
ATCCTAATGTTCAGTCCCTCCTTCCTGAACTGTAACAAGGCACAGGGTGGGTGGGGCAGCCGCC
TTCCCTTTTCCTTTGCTGTCATTCCCATCTTACCTTTTCCTGTTCTGTGCCATTCTGGGGGTCC
ACTCGGTGCACATCATCCCAGGGTCTTGTTGCTGACCTGGGGAAGGTCCTCTGGCTTCCACGGG
GGAGCTCTTGGAGCCCTGTTTTGTTCTTTTCTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTCC
GGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAAT
CCCCAGCCCCTGGAGCCCTGTTTTGACTGCACACTTGGCTCTCTGCTCGAATACCAAGGCTCGG
GGCACCTAGAGACTCTCAGCAGCCCCTCAGCTCCCTTTGCCTCCCCACTACCCTCATGATGCTG
GGGCAAGCAGGACAATTCGAATGTGGCTCTCACAGGAAAGCAGCCATGTCAGCAGCAATTATCA
CAGGATGCCTCAGTGATTGAAAAAGCCATAGAAGGGAACTCAGCCCTGCCTAGTCACCGTGGGT
CTGCTGTGTTAAAGATACATATTTTCTTACTGTTTGAAAGCATACTTTGTAAGGCTTCATGCTG
TCATTCTCAACAAAGCTCTGTCCAGTCCCACAGAAGTGTAGAGAAGAGGGAGTGGGCAAGGGAC
CTCACTGAGACTGCCTCACATGTTTGCCTTTTTTCTCTATTTGCTGGTAGGGAGAGGTCCTGTT
AGGAAATCTCTGTTGCTCATGGGCAATAAGGCATTTTGGAACTTAACAAAAAGTCCTTTCTGAT
TGCACTGAATTATCTTTCATATGTAGTGATCATTTTTCCTCGGCTCCCTCCACAGTAGCGCACA
GTCTGGGTTGGCGTGTTGACTCAGCATGTTGGGGGGTGGGGGTCAAGATCTGTGTTTCTGGGAC
CAAATGCACTCAGTCTCGGTTGCCTTAAGAATCTTTCAGGCCAGGCCTGCGCTAGGAGTGCGCT
AGGGATCTAGAACACGCCCGTTCCTAGCTGCCTACCTTGTGTTCCTTGGGCTCTCTTAAGCTAG
CGCTAACTGCCACGCCCTCAGCCTCTGCTTCACAAGTCCTCAGTGGAGAGAACTATTTTTGTTA
CCGTATTATAGCATGAATATTTATATGGTAGCCTCTGCAGTCTTAGTGATTTCTCTCCCCCCCC
CCCAAAAAAAAATTGCCTCATGTGATGTTTTATACTTCACAAAGTATGGTTTAAAGGCACAAGG
TCATCATCCTTGTTATATCAGTTGAATGTGCATTGAAATATTTTTCTATGCTTTTTTTAAATCA
CAATAGAAAAGGTAAACAAGCTGTTGCAACCTGTGTGGTTACGACAATTTATGTTATGTATTTA
TATTTGAAACCAGATTTCTATAACTTGCATTTCTGTACAGAACTTTCCATAGGTTTATATATTG
TGTATTTTTATTCAAGATTGAGATGTGGTTTATGTTTAACATTAAAAGATAAAATAAGACCCTT
TGTTTAAAACACACTGTGCAAGTTTGGAAGTGTCTGTTAATAATTTACTGTATATAATACTTGC
CTTTGTTTATACCTCCAAGTTTTTACACTGAAGATAAACTAGCTTTAATTAAATTTTAAAAATT
TAAGGGAATAAGCTGTTCGGCTGAGTCAGTTTAAATGTGCAGTTTATTTTCGGGGTGTTGGTGG
AAGTTTATACATGCCTCACTGCATTGTAACTGACTGCAGAGATTAAAGAACAACTTTCAATCAG
CGCCATAACTGA

hide sequence

RefSeq Acc Id:

XM_017590832 ⟹ XP_017446321

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	61,223,767 - 61,293,266 (+)	NCBI
Rnor_6.0	2	62,236,497 - 62,305,995 (+)	NCBI

Sequence:

show sequence

ACGGTGTAAGCGGCGGAGCCGGATGCGGGCGGTACTGCCGCTGCCGCGGCCCTAGGGATGGGCG
GAGCCCCGGCCGCTGGTGCTGGTGGCCGCCGCCACTGCCGGAACCTGAGCCGGAGCCGCCGCCT
CTGCCGCCGCGCGTCGTTGCTTCGCAAGGCGGCGGAATGCTGGGGAAAGGGGGAGTCGGCGGTG
GCGGCGGCACCAAGGCGCCCAAGCCCTCCTTCGTGTCGTACGTGCGCCCTGAGGAAATTCACAC
AAATGAGAAGGAAGTAACAGAGAAGGAGGAAGTCACTCTTCACTTGTTGCCAGGTGAACAACTG
CTCTGTGAAGCCAGCACGGTCCTGAAGTATGTGCAGGAGGACTCTTGTCAGCTTGGTATCTGTG
GGAGGCTCGTCTGCACCGACTTCAGAATCTCCTTCCTGGGGGATGAAGGCTCGGCTGTGGATAA
TGGGGCGGAAACTCATTTTAAGAATAAGATCATAGGAGTAAATGACATTCCACTCCACTGTGTG
GATCAGATTTATGGAGATTGTCAGTGGCATAATCCATCATACCCAGAGTCCCAAACTGCTGAAA
AGACTGTTTCTGTTTTCCTACGCAGCTGCTGTGCATGGCACAGGTTGCCGGCATACTTTGTTGT
CCCCACTCCCCTTCTCGAAGACGATGTGAAGCGTTTTCAGGGCCGTGGCATACCAATCTGGTGT
TGGTCCTGTCACAATGGAAGTGCCCTTCTGAAAATGTCAGCACTGCCCAAAGAACAGGATGACA
GTGCTTTGCAAATTCAGAAGAGCTTCTTGGATGGAATTTACAAGACTATCCACAGGCCACCCTA
CGAAATGGTTAAAACGGAAGACTTGTCAAGCAACTTCCTTTCCCTACAGGAGATCCAGAGTTCA
TACTGTAAATTTAAGCAGCTGTTTCTGATAGATAGCAGTTCAGAATTTTGGGACACAGATGTAA
AGTGGTTTTCTCTCTTAGAAAGCAGCGGCTGGCTGGATATAATCAGACGCTGCCTGAAGAGAGC
AATAGAGATTATAGAATGCCTGGAAGCGCAGAACATGAACGTCCTCCTCTTGGAAGAGAACGCT
TCTGATCTCTGCTGCCTCCTATCATCTCTGGTGCAAGTGATGATGGATGCCCACTGTCGAACCT
GGACTGGGTTTCAGAGCCTCATCCAAAAGGAGTGGGTCATGGGTGGCCACTCTTTTTTGGACCG
CTGTAACCATCTCCACCAGAGCGACAAAGAGGAGGTCCCTGTGTTCCTGCTTTTCTTGGACTGT
GTCTGGCAACTGGTGCACCAGCATCCCCCGGCATTTGAGTTCACAGAGACATACCTGACTGTTC
TGTCAGATAGCCTGTATATACCTATTTTTAGCACCTTCTTCTTCAATTCACCTCATCAAAAAGA
TACTAACATGGGCAGGGAGAGCCTGGATGCACAAAGCAAGCCTTTGACGCTGCTCACCGTGTGG
GATTGGTCAGTACAGTTTGAACCCAAAGCACAGACTTTGCTCAGAAACCCTCTTTATGTGGAAA
AGCCAAAACTGGACAAAGGCCAGCGGAAAGGATCACGTTTCAAACATCAACGACAACTTTCTTT
GCCACTTACCCAGTCTAAGTCATCTCCCAAAAGAGGATTTTTCAGAGAAGAAACGGATCATTTA
ATCAAAAACCTTCTAGGCAAGAGAATTAGTAAACTTATTAACTCTTCCGATGATCTCCAGGACA
ACTCTCGAGAGTTCTATGACAACTGGCATAGTAAGCCCACAGACTACCATGGCTTGTTGTTGCC
TCACATTGAGGGGCCTGAAATCAAGGTGTGGGCTCAGCGCTATTTACGTTGGATTCCAGAAGCC
CAAATCCTGGGTGGTGGCAGAGTGGCCACTATGGGCAAACTCTTGGAAATGATGGAGGAAGTGC
AGAGCTTACAGGAGAAAATAGAGGCAAGGCATCACAGACAGGAGGCTATCCACGTACAGGCGCC
TGGCCTGCTCAGGAACTCTGCCCGCCTGTCTTCCCTGTTCCCCTTTGCAATGCACCAGCGACAT
TCAGCCAAGCCTGTCTTACCCACCAGTGGCTGGAAAGCTTTGGGAGGTGAAGATGACCTGGCCA
AACGAGAAGATGAGTTTGTGGACCTAGGGGACGTGTGACTCTCTTCTCAGGGACTGTGAAAGAG
GCACACTGTACGGTGGGACAATTGTTCCTGGACTGGTGTCACGATGTTAGCTCAGTGCTGTGAA
GGAGAGAGCAGGGCTTTCAGGAAGAGAGCTGGTTCTCCTTTTCTTCCACAGTTCTGGAAGACAG
CGCAACAAAGCCATGCCTCTAGGATGCATAGGAGGGAGTTCCTACTTGACCTGTCATAGGATTG
GGGTCATTTCCTGACATCTGTATTATATGTACACACAATGGCTCGTGGCCAGGCTGCTGTGAGA
GCCTCCTGATTTCTCTGTGCCAAGATAATTACATAGCCATTTCGAACAAGAGTAAGGGCAGCTT
TATGCGGCATCTAAGTGGAGAGACAGAGGATTAAGAGATGTGCTTTGTCTTAAACCATATTCCA
GCGTGCACACACACACATGCACGCACCACAGAAAAGTTGACAGTTCTTCTGGTGTCATCCATCC
TAATGTTCAGTCCCTCCTTCCTGAACTGTAACAAGGCACAGGGTGGGTGGGGCAGCCGCCTTCC
CTTTTCCTTTGCTGTCATTCCCATCTTACCTTTTCCTGTTCTGTGCCATTCTGGGGGTCCACTC
GGTGCACATCATCCCAGGGTCTTGTTGCTGACCTGGGGAAGGTCCTCTGGCTTCCACGGGGGAG
CTCTTGGAGCCCTGTTTTGTTCTTTTCTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTCCGGAG
CTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCC
AGCCCCTGGAGCCCTGTTTTGACTGCACACTTGGCTCTCTGCTCGAATACCAAGGCTCGGGGCA
CCTAGAGACTCTCAGCAGCCCCTCAGCTCCCTTTGCCTCCCCACTACCCTCATGATGCTGGGGC
AAGCAGGACAATTCGAATGTGGCTCTCACAGGAAAGCAGCCATGTCAGCAGCAATTATCACAGG
ATGCCTCAGTGATTGAAAAAGCCATAGAAGGGAACTCAGCCCTGCCTAGTCACCGTGGGTCTGC
TGTGTTAAAGATACATATTTTCTTACTGTTTGAAAGCATACTTTGTAAGGCTTCATGCTGTCAT
TCTCAACAAAGCTCTGTCCAGTCCCACAGAAGTGTAGAGAAGAGGGAGTGGGCAAGGGACCTCA
CTGAGACTGCCTCACATGTTTGCCTTTTTTCTCTATTTGCTGGTAGGGAGAGGTCCTGTTAGGA
AATCTCTGTTGCTCATGGGCAATAAGGCATTTTGGAACTTAACAAAAAGTCCTTTCTGATTGCA
CTGAATTATCTTTCATATGTAGTGATCATTTTTCCTCGGCTCCCTCCACAGTAGCGCACAGTCT
GGGTTGGCGTGTTGACTCAGCATGTTGGGGGGTGGGGGTCAAGATCTGTGTTTCTGGGACCAAA
TGCACTCAGTCTCGGTTGCCTTAAGAATCTTTCAGGCCAGGCCTGCGCTAGGAGTGCGCTAGGG
ATCTAGAACACGCCCGTTCCTAGCTGCCTACCTTGTGTTCCTTGGGCTCTCTTAAGCTAGCGCT
AACTGCCACGCCCTCAGCCTCTGCTTCACAAGTCCTCAGTGGAGAGAACTATTTTTGTTACCGT
ATTATAGCATGAATATTTATATGGTAGCCTCTGCAGTCTTAGTGATTTCTCTCCCCCCCCCCCA
AAAAAAAATTGCCTCATGTGATGTTTTATACTTCACAAAGTATGGTTTAAAGGCACAAGGTCAT
CATCCTTGTTATATCAGTTGAATGTGCATTGAAATATTTTTCTATGCTTTTTTTAAATCACAAT
AGAAAAGGTAAACAAGCTGTTGCAACCTGTGTGGTTACGACAATTTATGTTATGTATTTATATT
TGAAACCAGATTTCTATAACTTGCATTTCTGTACAGAACTTTCCATAGGTTTATATATTGTGTA
TTTTTATTCAAGATTGAGATGTGGTTTATGTTTAACATTAAAAGATAAAATAAGACCCTTTGTT
TAAAACACACTGTGCAAGTTTGGAAGTGTCTGTTAATAATTTACTGTATATAATACTTGCCTTT
GTTTATACCTCCAAGTTTTTACACTGAAGATAAACTAGCTTTAATTAAATTTTAAAAATTTAAG
GGAATAAGCTGTTCGGCTGAGTCAGTTTAAATGTGCAGTTTATTTTCGGGGTGTTGGTGGAAGT
TTATACATGCCTCACTGCATTGTAACTGACTGCAGAGATTAAAGAACAACTTTCAATCAGCGCC
ATAACTGA

hide sequence

RefSeq Acc Id:

XM_039102200 ⟹ XP_038958128

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	61,251,356 - 61,293,266 (+)	NCBI

RefSeq Acc Id:

XM_039102201 ⟹ XP_038958129

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	61,223,714 - 61,293,266 (+)	NCBI

RefSeq Acc Id:

XM_039102202 ⟹ XP_038958130

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	61,223,778 - 61,293,266 (+)	NCBI

RefSeq Acc Id:

XM_039102203 ⟹ XP_038958131

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	61,270,962 - 61,293,266 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012077	(Get FASTA)	NCBI Sequence Viewer
	XP_006232108	(Get FASTA)	NCBI Sequence Viewer
	XP_017446321	(Get FASTA)	NCBI Sequence Viewer
	XP_038958128	(Get FASTA)	NCBI Sequence Viewer
	XP_038958129	(Get FASTA)	NCBI Sequence Viewer
	XP_038958130	(Get FASTA)	NCBI Sequence Viewer
	XP_038958131	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89876	(Get FASTA)	NCBI Sequence Viewer
	Q5FVM6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001012077 ⟸ NM_001012077

- UniProtKB:

Q5FVM6 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MLGKGGVGGGGGTKAPKPSFVSYVRPEEIHTNEKEVTEKEEVTLHLLPGEQLLCEASTVLKYVQ
EDSCQLGICGRLVCTDFRISFLGDEGSAVDNGAETHFKNKIIGVNDIPLHCVDQIYGVFDEKKK
PLFGQLKKYPEKLVIHCKDLRVLHFCLRYTKEEEVKRIVSGIIHHTQSPKLLKRLFLFSYAAAV
HGTAADPRNCTVMFDTPKDWCWELERTKGSVKYKTVSVNEGYRVCDRLPAYFVVPTPLLEDDVK
RFQGRGIPIWCWSCHNGSALLKMSALPKEQDDSALQIQKSFLDGIYKTIHRPPYEMVKTEDLSS
NFLSLQEIQSSYCKFKQLFLIDSSSEFWDTDVKWFSLLESSGWLDIIRRCLKRAIEIIECLEAQ
NMNVLLLEENASDLCCLLSSLVQVMMDAHCRTWTGFQSLIQKEWVMGGHSFLDRCNHLHQSDKE
EVPVFLLFLDCVWQLVHQHPPAFEFTETYLTVLSDSLYIPIFSTFFFNSPHQKDTNMGRESLDA
QSKPLTLLTVWDWSVQFEPKAQTLLRNPLYVEKPKLDKGQRKGSRFKVRCAVLTPPHPHLHQLL
HPVYVRTKATL

hide sequence

RefSeq Acc Id:	XP_006232108 ⟸ XM_006232046
- Peptide Label:	isoform X1
- UniProtKB:	Q5FVM6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLGKGGVGGGGGTKAPKPSFVSYVRPEEIHTNEKEVTEKEEVTLHLLPGEQLLCEASTVLKYVQ EDSCQLGICGRLVCTDFRISFLGDEGSAVDNGAETHFKNKIIGVNDIPLHCVDQIYGVFDEKKK PLFGQLKKYPEKLVIHCKDLRVLHFCLRYTKEEEVKRIVSGIIHHTQSPKLLKRLFLFSYAAAV HGTAADPRNCTVMFDTPKDWCWELERTKGSVKYKTVSVNEGYRVCDRLPAYFVVPTPLLEDDVK RFQGRGIPIWCWSCHNGSALLKMSALPKEQDDSALQIQKSFLDGIYKTIHRPPYEMVKTEDLSS NFLSLQEIQSSYCKFKQLFLIDSSSEFWDTDVKWFSLLESSGWLDIIRRCLKRAIEIIECLEAQ NMNVLLLEENASDLCCLLSSLVQVMMDAHCRTWTGFQSLIQKEWVMGGHSFLDRCNHLHQSDKE EVPVFLLFLDCVWQLVHQHPPAFEFTETYLTVLSDSLYIPIFSTFFFNSPHQKDTNMGRESLDA QSKPLTLLTVWDWSVQFEPKAQTLLRNPLYVEKPKLDKGQRKGSRFKHQRQLSLPLTQSKSSPK RGFFREETDHLIKNLLGKRISKLINSSDDLQDNSREFYDNWHSKPTDYHGLLLPHIEGPEIKVW AQRYLRWIPEAQILGGGRVATMGKLLEMMEEVQSLQEKIEARHHRQEAIHVQAPGLLRNSARLS SLFPFAMHQRHSAKPVLPTSGWKALGGEDDLAKREDEFVDLGDV hide sequence

RefSeq Acc Id:

XP_017446321 ⟸ XM_017590832

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLGKGGVGGGGGTKAPKPSFVSYVRPEEIHTNEKEVTEKEEVTLHLLPGEQLLCEASTVLKYVQ
EDSCQLGICGRLVCTDFRISFLGDEGSAVDNGAETHFKNKIIGVNDIPLHCVDQIYGDCQWHNP
SYPESQTAEKTVSVFLRSCCAWHRLPAYFVVPTPLLEDDVKRFQGRGIPIWCWSCHNGSALLKM
SALPKEQDDSALQIQKSFLDGIYKTIHRPPYEMVKTEDLSSNFLSLQEIQSSYCKFKQLFLIDS
SSEFWDTDVKWFSLLESSGWLDIIRRCLKRAIEIIECLEAQNMNVLLLEENASDLCCLLSSLVQ
VMMDAHCRTWTGFQSLIQKEWVMGGHSFLDRCNHLHQSDKEEVPVFLLFLDCVWQLVHQHPPAF
EFTETYLTVLSDSLYIPIFSTFFFNSPHQKDTNMGRESLDAQSKPLTLLTVWDWSVQFEPKAQT
LLRNPLYVEKPKLDKGQRKGSRFKHQRQLSLPLTQSKSSPKRGFFREETDHLIKNLLGKRISKL
INSSDDLQDNSREFYDNWHSKPTDYHGLLLPHIEGPEIKVWAQRYLRWIPEAQILGGGRVATMG
KLLEMMEEVQSLQEKIEARHHRQEAIHVQAPGLLRNSARLSSLFPFAMHQRHSAKPVLPTSGWK
ALGGEDDLAKREDEFVDLGDV

hide sequence

RefSeq Acc Id:

ENSRNOP00000036677 ⟸ ENSRNOT00000036633

RefSeq Acc Id:	XP_038958129 ⟸ XM_039102201
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038958130 ⟸ XM_039102202
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038958128 ⟸ XM_039102200
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038958131 ⟸ XM_039102203
- Peptide Label:	isoform X5

Protein Domains

Myotubularin phosphatase

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691194

Promoter ID:

EPDNEW_R1719

Type:

initiation region

Name:

Mtmr12_1

Description:

myotubularin related protein 12

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	62,236,560 - 62,236,620	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307902	AgrOrtholog
Ensembl Genes	ENSRNOG00000022929	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000036677	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000036633	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7325487	IMAGE-MGC_LOAD
InterPro	MTMR12	UniProtKB/Swiss-Prot
	MTMR12-like_C	UniProtKB/Swiss-Prot
	Myotubularin-like_Pase_dom	UniProtKB/Swiss-Prot
	Myotubularin_fam	UniProtKB/Swiss-Prot
	Prot-tyrosine_phosphatase-like	UniProtKB/Swiss-Prot
KEGG Report	rno:310155	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109012	IMAGE-MGC_LOAD
NCBI Gene	310155	ENTREZGENE
PANTHER	PTHR10807	UniProtKB/Swiss-Prot
	PTHR10807:SF37	UniProtKB/Swiss-Prot
Pfam	3-PAP	UniProtKB/Swiss-Prot
	Myotub-related	UniProtKB/Swiss-Prot
PhenoGen	Mtmr12	PhenoGen
PROSITE	PPASE_MYOTUBULARIN	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52799	UniProtKB/Swiss-Prot
UniProt	MTMRC_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Mtmr12	myotubularin related protein 12	Pip3ap	phosphatidylinositol-3-phosphatase associated protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Pip3ap	phosphatidylinositol-3-phosphatase associated protein	Pip3ap_predicted	phosphatidylinositol-3-phosphatase associated protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Pip3ap_predicted	phosphatidylinositol-3-phosphatase associated protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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