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Gene: Shox2 (short stature homeobox 2) Rattus norvegicus
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Symbol: Shox2
Name: short stature homeobox 2
Description: Predicted to have sequence-specific DNA binding activity. Predicted to be involved in several processes, including animal organ development; positive regulation of cell development; and regulation of transcription by RNA polymerase II. Predicted to localize to the nucleus. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human SHOX2 (short stature homeobox 2); INTERACTS WITH 3-chloropropane-1,2-diol; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: paired family homeodomain protein Prx3; short stature homeobox protein 2
Orthologs:
Homo sapiens (human) : SHOX2 (short stature homeobox 2)  HGNC  Alliance
Mus musculus (house mouse) : Shox2 (short stature homeobox 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shox2 (short stature homeobox 2)
Pan paniscus (bonobo/pygmy chimpanzee) : SHOX2 (short stature homeobox 2)
Canis lupus familiaris (dog) : SHOX2 (short stature homeobox 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shox2 (short stature homeobox 2)
Sus scrofa (pig) : SHOX2 (short stature homeobox 2)
Chlorocebus sabaeus (African green monkey) : SHOX2 (short stature homeobox 2)
Heterocephalus glaber (naked mole-rat) : Shox2 (short stature homeobox 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02164,118,175 - 164,126,783 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2164,118,191 - 164,126,783 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02183,469,813 - 183,478,421 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42156,881,044 - 156,889,653 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12156,831,006 - 156,839,616 (-)NCBI
Celera2145,597,026 - 145,605,637 (-)NCBICelera
Cytogenetic Map2q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Shox2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 3674
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.