Mrpl47 (mitochondrial ribosomal protein L47)

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Gene: Mrpl47 (mitochondrial ribosomal protein L47) Rattus norvegicus

Analyze

Symbol:

Mrpl47

Name:

mitochondrial ribosomal protein L47

RGD ID:

1307531

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL47 (mitochondrial ribosomal protein L47); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

39S ribosomal protein L47, mitochondrial; LOC294963; MGC125055

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MRPL47 (mitochondrial ribosomal protein L47)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mrpl47 (mitochondrial ribosomal protein L47)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Mrpl47 (mitochondrial ribosomal protein L47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MRPL47 (mitochondrial ribosomal protein L47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MRPL47 (mitochondrial ribosomal protein L47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mrpl47 (mitochondrial ribosomal protein L47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MRPL47 (mitochondrial ribosomal protein L47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MRPL47 (mitochondrial ribosomal protein L47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mrpl47 (mitochondrial ribosomal protein L47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MRPL47 (mitochondrial ribosomal protein L47)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mrpl47 (mitochondrial ribosomal protein L47)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mrpl47 (mitochondrial ribosomal protein L47)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	MRPL4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mRpL47	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mrpl-47	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	115,507,842 - 115,520,093 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	2	115,500,264 - 115,518,994 (-)	Ensembl
Rnor_6.0	2	119,128,311 - 119,139,451 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	119,128,309 - 119,139,451 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	138,779,648 - 138,790,788 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	118,935,032 - 118,946,172 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	118,881,075 - 118,891,167 (-)	NCBI
Celera	2	110,611,433 - 110,622,572 (-)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Currarino syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,6-trinitrobenzenesulfonic acid (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

acrylamide (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

CGP 52608 (ISO)

curcumin (ISO)

cylindrospermopsin (ISO)

dibenzo[a,l]pyrene (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

ivermectin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

lipopolysaccharide (ISO)

lithium chloride (ISO)

N-methyl-N-nitrosourea (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

sodium dichromate (EXP)

tetrachloromethane (EXP)

thalidomide (ISO)

thioacetamide (EXP)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial translation (IBA)

Cellular Component

mitochondrial large ribosomal subunit (IBA,ISO)

mitochondrion (ISO)

Molecular Function

structural constituent of ribosome (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:18614015	PMID:25278503	PMID:28892042

Genomics

Comparative Map Data

Mrpl47
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	115,507,842 - 115,520,093 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	2	115,500,264 - 115,518,994 (-)	Ensembl
Rnor_6.0	2	119,128,311 - 119,139,451 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	119,128,309 - 119,139,451 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	138,779,648 - 138,790,788 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	118,935,032 - 118,946,172 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	118,881,075 - 118,891,167 (-)	NCBI
Celera	2	110,611,433 - 110,622,572 (-)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

MRPL47
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	179,588,285 - 179,604,646 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	3	179,588,285 - 179,604,649 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	179,306,073 - 179,322,434 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	180,788,947 - 180,805,128 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	3	180,788,958 - 180,805,136	NCBI
Celera	3	177,737,131 - 177,753,312 (-)	NCBI
Cytogenetic Map	3	q26.33	NCBI
HuRef	3	176,710,034 - 176,726,221 (-)	NCBI		HuRef
CHM1_1	3	179,269,352 - 179,285,534 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	182,392,124 - 182,408,486 (-)	NCBI

Mrpl47
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	32,781,646 - 32,790,904 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	3	32,779,546 - 32,791,754 (-)	Ensembl
GRCm38	3	32,727,497 - 32,736,755 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	32,725,397 - 32,737,605 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	32,626,419 - 32,635,677 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	32,919,088 - 32,928,324 (-)	NCBI			mm8
MGSCv36	3	32,582,003 - 32,591,239 (-)	NCBI			mm8
Celera	3	32,638,374 - 32,639,411 (-)	NCBI		Celera
Cytogenetic Map	3	A3	NCBI

Mrpl47
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955420	8,765,131 - 8,778,172 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRPL47
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	184,791,041 - 184,807,194 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	184,791,041 - 184,807,194 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	176,620,910 - 176,636,833 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

MRPL47
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	12,988,682 - 13,020,184 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	12,988,735 - 13,020,149 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	17,130,366 - 17,162,253 (-)	NCBI
ROS_Cfam_1.0	34	12,886,139 - 12,917,707 (-)	NCBI
ROS_Cfam_1.0 Ensembl	34	12,884,676 - 12,917,657 (-)	Ensembl
UMICH_Zoey_3.1	34	12,937,276 - 12,968,856 (-)	NCBI
UNSW_CanFamBas_1.0	34	12,919,536 - 12,951,782 (-)	NCBI
UU_Cfam_GSD_1.0	34	13,161,012 - 13,191,646 (-)	NCBI

Mrpl47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	109,646,473 - 109,650,727 (-)	NCBI
SpeTri2.0	NW_004936566	3,555,908 - 3,573,075 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL47
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	117,625,330 - 117,656,389 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	117,626,846 - 117,656,388 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	126,721,272 - 126,750,809 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPL47
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	9,822,442 - 9,838,287 (+)	NCBI	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666063	18,693,827 - 18,710,142 (+)	NCBI	Vero_WHO_p1.0

Mrpl47
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	57,333,671 - 57,349,773 (-)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624730	57,337,699 - 57,349,863 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH130746

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	115,508,407 - 115,508,588 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	119,128,877 - 119,129,057	NCBI	Rnor6.0
Rnor_5.0	2	138,780,214 - 138,780,394	UniSTS	Rnor5.0
RGSC_v3.4	2	118,935,598 - 118,935,778	UniSTS	RGSC3.4
Celera	2	110,611,998 - 110,612,178	UniSTS
RH 3.4 Map	2	686.4	UniSTS
Cytogenetic Map	2	q25	UniSTS

AI029728

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	52,840,769 - 52,840,981 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	60,259,152 - 60,259,363	NCBI	Rnor6.0
Rnor_5.0	7	60,258,117 - 60,258,328	UniSTS	Rnor5.0
RGSC_v3.4	7	56,540,240 - 56,540,451	UniSTS	RGSC3.4
Celera	7	49,614,729 - 49,614,940	UniSTS
RH 3.4 Map	7	478.11	UniSTS
Cytogenetic Map	7	q22	UniSTS
Cytogenetic Map	2	q25	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	127469484	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26917817	136917119	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1558648	Smcn1	Smooth muscle cell number QTL 1		0.039	blood vessel smooth muscle cell quantity (VT:0010525)	aorta smooth muscle cell count per unit vessel length (CMO:0001646)	2	59134147	127460910	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	59324377	141596857	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	76539322	150540526	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	78665616	143657569	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61392	Bp6	Blood pressure QTL 6	7		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	80270434	125270434	Rat
1598865	Bp296	Blood pressure QTL 296	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	81018907	126018907	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1578772	Stresp14	Stress response QTL 14	5	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	2	82345893	130923501	Rat
7207808	Bmd89	Bone mineral density QTL 89	4.1		femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	2	88862519	133862519	Rat
2300165	Bmd49	Bone mineral density QTL 49	4.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	2	88862519	133862519	Rat
2300170	Bmd45	Bone mineral density QTL 45	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	2	88862519	133862519	Rat
2300185	Bmd46	Bone mineral density QTL 46	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	88862519	133862519	Rat
1598862	Glom9	Glomerulus QTL 9	3.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	2	92337601	137337601	Rat
1598863	Cm65	Cardiac mass QTL 65	2.3		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	92337601	137337601	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	102803808	147803808	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	104559726	149559726	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	112103657	148076632	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1354594	Despr10	Despair related QTL 10		0.00000249	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	114654253	159654253	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	143657569	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	143657569	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	377
Count of miRNA genes:	223
Interacting mature miRNAs:	261
Transcripts:	ENSRNOT00000015864
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	40	19	16	2	16	7	9	66	30	36	1	7
Low		3	38	25	17	25	1	2	8	5	5	10	1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000015864 ⟹ ENSRNOP00000015863

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	115,500,264 - 115,518,994 (-)	Ensembl
Rnor_6.0 Ensembl	2	119,128,309 - 119,139,451 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105200 ⟹ ENSRNOP00000097285

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	115,504,730 - 115,518,994 (-)	Ensembl

RefSeq Acc Id:

NM_001037183 ⟹ NP_001032260

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	115,507,842 - 115,518,982 (-)	NCBI
Rnor_6.0	2	119,128,311 - 119,139,451 (-)	NCBI
Rnor_5.0	2	138,779,648 - 138,790,788 (-)	NCBI
RGSC_v3.4	2	118,935,032 - 118,946,172 (-)	RGD
Celera	2	110,611,433 - 110,622,572 (-)	RGD

Sequence:

show sequence

AACATGGCTGCCACCAGTCTAGTGGGTATTTGTAGAAGAGCCTCAGCGTTCTTAAAGGCTGCTT
GTTCCCTAGTAAATCCCAAGACCCCTGCTCACTCCGGTTGCAGGCCTCCTCTTAGTTTGTTGCA
TAAGAACACACCACATGCCACATCTTTTCTCCAGTGTAAATTTCTTCATACCACGTTGTCAAGG
AAAGGACTAGAAGAATTTTTTGATGACCCAAAGAATTGGGGGGAAGAAAAAGTCAAATCTGGAG
CTTCATGGACCTGCCAGCAGCTGAGGAACAAAAGTAACGAAGACTTACATAAGCTTTGGTATGT
CCTTCTGAAGGAAAGGAACATGCTTCTAACTCTAGAGCAAGAGGCCAAGCGACAGAGACTGCCG
ATGCCAAGTCCAGAGCGCTTAGAAAAGGTTGTGGATTCCATGGATGCCTTAGATAAAGTTGTCC
AGGAGAGGGAAGATGCTTTAAGGCTGCTTCAGACCGGTCAAGAAAAGCCAAGACCCGGTGCTTG
GAGACAGGACATCTTTGGAAGAATCGTCTGGCACAAATTCAAGCAGTGGCCTATACCTTGGTAC
CTAAATAAGAGATACAACCGGAGGCGGTTCTTCGCAATGCCTTACGTGGATAGCTTTATCAGAC
TGAGAATTGAGAAACATGCCCGCACTGAAGCAAGAAAGAGAAGCTTACAGAAAAAGAAAGAAAA
AATTCTCCAGGCAAAGTTCCCACATCTCTCTCAAGACCGGAAATCAAGTACTGTCTAAAATGAG
ATCCCGAAGTCCAGTTCCGTTGTCTTAAAGTCTGTGTCCTGATGTGAATATCTGTTAAGCAGTT
TATAAAGAAATGTTCTTGTAAACATGGCATCTTCATTAGCTCTGCAAGTAGTGTTCCTTATACC
AAAACCAAGCAGAGTTCAGGTTCAATTCCCCCCAAACAGGTCCTGACATCTGAGCAGCTTAATG
TCACCTGATATCTTGGTGTAAATGTAATGCTGGTTGCCAGAGCAACACTAACAGAAGTCAGTTC
AGAAATGCTGTTCTTACCAGTGATGTTAAACTGTGACGGGGAGGGAGCTGAAGAGAGGGCTCAA
TACATAAGGGCACTTGTTGCTCTTCCAAAGAACCCAGCACAAATATGGTAGGAAGTTACCGTCT
GTAGTTCCAGTTGTAGGGAACCAATGCCCTCCTCTGGCTTGTACAGACACCAGACACTAACGAG
TGTGGTACAGATGTACGTTCAGGTGAAATACCCATGCGTAATTTTGTCAGCGTAAAAGGGGTGT
GGATCCTGGTAGTAAAAGTGATTGCTTTCCCTCATCAAGTAACGGTAAAAGCAGCACTGACAGC
AGCAAGTCACAACAGACCAATCCAAACCCTTTTAGGACAGTAGTGATTTTTATTTAATTTTGTA
AGCCTAAGGTAAAAAGCATAGGCAGTAACTTTTACTAGTCAATAAAGAGTAATTCCACCAACCC
ACAGGAGAGCTGGAAAGTACTTACTGAAAGCAAAATATTTAGAGAAAATAGACATTCATACAAA
ATTATAAAATGCCTGTAATAAGAATAAGTGCATCTCAAGGAAAGCACAAACTCATTTAATTTAT
AGAGCCAGTTAAAGCCTTAAAAAATTTAAGTGGAAATTGAAATATGCAAACATGTATAAACATT
CTACAAAAGATGGTCATCTTTTCCTGAGTGTCCTAAAGCTACAGACGTGAGGTGATGGGCAGGC
AGGGTGGAGCCCTCAAGGGCATTTTCTTTCTACACACTGCTTCCCTCCTTCTTCATATTCCTGT
TTGGAAATCCACATCTGTTGAAAGGTACCCTGTAAGGCAGAAAGAAATATTACATAATTATGCC
CCAGTTTTCATTAGAAGGTGGTACTTTTTACTCATCAATGTCCTCAACTGCTATACTATTAAAC
TCCCTCCTCCAAACCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008760912 ⟹ XP_008759134

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	115,508,908 - 115,518,995 (-)	NCBI
Rnor_6.0	2	119,129,374 - 119,139,440 (-)	NCBI

Sequence:

show sequence

CACCAGTCTAGTGGGTATTTGTAGAAGAGCCTCAGCGTTCTTAAAGGCTGCTTGTTCCCTAGTA
AATCCCAAGACCCCTGCTCACTCCGGGAGCTTCATGGACCTGCCAGCAGCTGAGGAACAAAAGT
AACGAAGACTTACATAAGCTTTGGTATGTCCTTCTGAAGGAAAGGAACATGCTTCTAACTCTAG
AGCAAGAGGCCAAGCGACAGAGACTGCCGATGCCAAGTCCAGAGCGCTTAGAAAAGGTTGTGGA
TTCCATGGATGCCTTAGATAAAGTTGTCCAGGAGAGGGAAGATGCTTTAAGGCTGCTTCAGACC
GGTCAAGAAAAGCCAAGACCCGGTGCTTGGAGACAGGACATCTTTGGAAGAATCGTCTGGCACA
AATTCAAGCAGTGGCCTATACCTTGGTACCTAAATAAGAGATACAACCGGAGGCGGTTCTTCGC
AATGCCTTACGTGGATAGCTTTATCAGACTGAGAATTGAGAAACATGCCCGCACTGAAGCAAGA
AAGAGAAGCTTACAGAAAAAGAAAGAAAAAATTCTCCAGGCAAAGTTCCCACATCTCTCTCAAG
ACCGGAAATCAAGTACTGTCTAAAATGAGATCCCGAAGTCCAGTTCCGTTGTCTTAAAGTCTGT
GTCCTGATGTGAATATCTGTTAAGCAGTTTATAAAGAAATGTTCTTGTAAACATGGCATCTTCA
TTA

hide sequence

RefSeq Acc Id:

XM_039101983 ⟹ XP_038957911

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	115,508,908 - 115,520,093 (-)	NCBI

RefSeq Acc Id:

XM_039101984 ⟹ XP_038957912

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	115,508,908 - 115,519,266 (-)	NCBI

RefSeq Acc Id:

XM_039101985 ⟹ XP_038957913

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	115,508,914 - 115,519,432 (-)	NCBI

RefSeq Acc Id:

XM_039101986 ⟹ XP_038957914

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	115,508,908 - 115,518,990 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032260	(Get FASTA)	NCBI Sequence Viewer
	XP_008759134	(Get FASTA)	NCBI Sequence Viewer
	XP_038957911	(Get FASTA)	NCBI Sequence Viewer
	XP_038957912	(Get FASTA)	NCBI Sequence Viewer
	XP_038957913	(Get FASTA)	NCBI Sequence Viewer
	XP_038957914	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05821	(Get FASTA)	NCBI Sequence Viewer
	EDM01203	(Get FASTA)	NCBI Sequence Viewer
	EDM01204	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001032260 ⟸ NM_001037183

- UniProtKB:

Q3B8R7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAATSLVGICRRASAFLKAACSLVNPKTPAHSGCRPPLSLLHKNTPHATSFLQCKFLHTTLSRK
GLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPM
PSPERLEKVVDSMDALDKVVQEREDALRLLQTGQEKPRPGAWRQDIFGRIVWHKFKQWPIPWYL
NKRYNRRRFFAMPYVDSFIRLRIEKHARTEARKRSLQKKKEKILQAKFPHLSQDRKSSTV

hide sequence

RefSeq Acc Id:	XP_008759134 ⟸ XM_008760912
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLTLEQEAKRQRLPMPSPERLEKVVDSMDALDKVVQEREDALRLLQTGQEKPRPGAWRQDIFG RIVWHKFKQWPIPWYLNKRYNRRRFFAMPYVDSFIRLRIEKHARTEARKRSLQKKKEKILQAKF PHLSQDRKSSTV hide sequence

RefSeq Acc Id:

ENSRNOP00000015863 ⟸ ENSRNOT00000015864

RefSeq Acc Id:	XP_038957911 ⟸ XM_039101983
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038957912 ⟸ XM_039101984
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038957914 ⟸ XM_039101986
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038957913 ⟸ XM_039101985
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSRNOP00000097285 ⟸ ENSRNOT00000105200

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3B8R7-F1-model_v2	AlphaFold	Q3B8R7	1-252	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691281

Promoter ID:

EPDNEW_R1806

Type:

initiation region

Name:

Mrpl47_1

Description:

mitochondrial ribosomal protein L47

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	119,139,470 - 119,139,530	EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307531	AgrOrtholog
BioCyc Gene	G2FUF-53418	BioCyc
Ensembl Genes	ENSRNOG00000011639	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000015863.6	UniProtKB/TrEMBL
	ENSRNOP00000097285	ENTREZGENE
	ENSRNOP00000097285.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015864.7	UniProtKB/TrEMBL
	ENSRNOT00000105200	ENTREZGENE
	ENSRNOT00000105200.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.330.20	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7369885	IMAGE-MGC_LOAD
InterPro	MRP-L47_sf	UniProtKB/TrEMBL
	Ribosomal_L47_mit	UniProtKB/TrEMBL
KEGG Report	rno:294963	UniProtKB/TrEMBL
MGC_CLONE	MGC:125055	IMAGE-MGC_LOAD
NCBI Gene	294963	ENTREZGENE
PANTHER	Ribosomal_L47_M	UniProtKB/TrEMBL
Pfam	MRP-L47	UniProtKB/TrEMBL
PhenoGen	Mrpl47	PhenoGen
UniProt	F7EW23_RAT	UniProtKB/TrEMBL
	Q3B8R7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Mrpl47	mitochondrial ribosomal protein L47	Mrpl47_predicted	mitochondrial ribosomal protein L47 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Mrpl47_predicted	mitochondrial ribosomal protein L47 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar