Mcidas (multiciliate differentiation and DNA synthesis associated cell cycle protein) - Rat Genome Database

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Gene: Mcidas (multiciliate differentiation and DNA synthesis associated cell cycle protein) Rattus norvegicus
Analyze
Symbol: Mcidas
Name: multiciliate differentiation and DNA synthesis associated cell cycle protein
RGD ID: 1584164
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including multi-ciliated epithelial cell differentiation; organelle assembly; and regulation of nucleobase-containing compound metabolic process. Predicted to be located in nuclear body. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 42. Orthologous to human MCIDAS (multiciliate differentiation and DNA synthesis associated cell cycle protein); INTERACTS WITH bisphenol A; 17beta-estradiol (ortholog); 2,3',4,4',5-Pentachlorobiphenyl (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Idas; LOC688802; Mci; Mcin; multiciliate cell differentiation 1; multiciliate differentiation and DNA synthesis-associated cell cycle protein; multicilin; similar to geminin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8246,370,017 - 46,377,747 (+)NCBIGRCr8
mRatBN7.2244,636,820 - 44,644,551 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,636,856 - 44,642,601 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0244,863,246 - 44,869,732 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,863,252 - 44,870,536 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0263,902,057 - 63,908,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4244,384,186 - 44,390,539 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera240,410,207 - 40,417,348 (+)NCBICelera
Cytogenetic Map2q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear body  (IEA,ISO)
nucleolus  (ISO)
nucleus  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15057822   PMID:21543332   PMID:25048963  


Genomics

Comparative Map Data
Mcidas
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8246,370,017 - 46,377,747 (+)NCBIGRCr8
mRatBN7.2244,636,820 - 44,644,551 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,636,856 - 44,642,601 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0244,863,246 - 44,869,732 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,863,252 - 44,870,536 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0263,902,057 - 63,908,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4244,384,186 - 44,390,539 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera240,410,207 - 40,417,348 (+)NCBICelera
Cytogenetic Map2q14NCBI
MCIDAS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38555,219,564 - 55,227,315 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl555,219,564 - 55,227,315 (-)EnsemblGRCh38hg38GRCh38
GRCh37554,515,392 - 54,523,143 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36554,551,411 - 54,559,720 (-)NCBINCBI36Build 36hg18NCBI36
Celera551,468,215 - 51,475,934 (-)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef551,488,443 - 51,496,162 (-)NCBIHuRef
CHM1_1554,519,283 - 54,527,002 (-)NCBICHM1_1
T2T-CHM13v2.0556,046,854 - 56,054,605 (-)NCBIT2T-CHM13v2.0
Mcidas
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,130,104 - 113,138,233 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,130,379 - 113,136,928 (+)EnsemblGRCm39 Ensembl
GRCm3813112,993,581 - 113,000,394 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13112,993,845 - 113,000,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713113,784,076 - 113,790,602 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613114,114,746 - 114,121,272 (+)NCBIMGSCv36mm8
Celera13117,311,043 - 117,317,582 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.93NCBI
Mcidas
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544612,438,737 - 12,445,254 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544612,438,737 - 12,445,254 (+)NCBIChiLan1.0ChiLan1.0
MCIDAS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2458,713,473 - 58,721,891 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1556,867,103 - 56,875,521 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0558,802,664 - 58,811,075 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1560,425,341 - 60,433,035 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl560,425,341 - 60,433,035 (+)Ensemblpanpan1.1panPan2
MCIDAS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1242,577,028 - 42,583,120 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl242,577,039 - 42,583,011 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha239,620,953 - 39,628,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0243,038,903 - 43,046,722 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,040,133 - 43,046,722 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1240,117,516 - 40,125,325 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0240,919,280 - 40,927,087 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0241,742,233 - 41,750,038 (-)NCBIUU_Cfam_GSD_1.0
Mcidas
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,597,126 - 203,603,667 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,533,713 - 12,539,387 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648012,533,604 - 12,539,639 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCIDAS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,376,959 - 34,384,453 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11634,377,130 - 34,386,095 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21636,422,904 - 36,425,070 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MCIDAS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1451,454,155 - 51,464,823 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl451,455,506 - 51,462,302 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666049322,285 - 331,786 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mcidas
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247594,038,732 - 4,045,351 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247594,038,668 - 4,045,607 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mcidas
70 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:37
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000063859
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)238573329122609194Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
9685065Swd6Spike wave discharge measurement QTL 65.80.01brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge rate (CMO:0001739)23922393748793699Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
12879863Bp402Blood pressure QTL 4020.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24112578956532139Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)228484589169504100Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)228484589169504100Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
4 5 6 72 16 25 4 6 4 3 30 16 65 1 42 21

Sequence


Ensembl Acc Id: ENSRNOT00000076278   ⟹   ENSRNOP00000067993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl244,636,856 - 44,642,601 (+)Ensembl
Rnor_6.0 Ensembl244,863,252 - 44,870,536 (+)Ensembl
RefSeq Acc Id: NM_001419705   ⟹   NP_001406634
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,370,017 - 46,377,747 (+)NCBI
mRatBN7.2244,636,820 - 44,644,551 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001406634 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZDX9 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067993.1
Ensembl Acc Id: ENSRNOP00000067993   ⟸   ENSRNOT00000076278
RefSeq Acc Id: NP_001406634   ⟸   NM_001419705
- UniProtKB: A0A096MJ52 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZDX9-F1-model_v2 AlphaFold D3ZDX9 1-379 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584164 AgrOrtholog
BioCyc Gene G2FUF-54384 BioCyc
Ensembl Genes ENSRNOG00000039588 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000076278.2 UniProtKB/TrEMBL
Gene3D-CATH Geminin coiled-coil domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Geminin/Multicilin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 688802 ENTREZGENE
PANTHER GEMININ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13372:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Geminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mcidas PhenoGen
RatGTEx ENSRNOG00000039588 RatGTEx
Superfamily-SCOP Geminin coiled-coil domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096MJ52 ENTREZGENE, UniProtKB/TrEMBL
  D3ZDX9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary D4AE60 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-28 Mcidas  multiciliate differentiation and DNA synthesis associated cell cycle protein  Mcin  multiciliate cell differentiation 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-02 Mcin  multiciliate cell differentiation 1  LOC688802  similar to geminin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC688802  similar to geminin  LOC686629  similar to geminin  Data merged from RGD:1595019 1643240 APPROVED
2006-11-20 LOC686629  similar to geminin      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688802  similar to geminin      Symbol and Name status set to provisional 70820 PROVISIONAL