Arl15 (ADP-ribosylation factor like GTPase 15) - Rat Genome Database

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Gene: Arl15 (ADP-ribosylation factor like GTPase 15) Rattus norvegicus
Analyze
Symbol: Arl15
Name: ADP-ribosylation factor like GTPase 15
RGD ID: 1597407
Description: Predicted to enable GTP binding activity and GTPase activity. Orthologous to human ARL15 (ADP ribosylation factor like GTPase 15); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ADP-ribosylation factor related protein 2; ADP-ribosylation factor-like 15; ADP-ribosylation factor-like protein 15; Arfrp2; LOC689079; similar to ADP-ribosylation factor related protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8247,171,377 - 47,555,666 (+)NCBIGRCr8
mRatBN7.2245,438,221 - 45,822,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl245,438,242 - 45,822,559 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx252,543,643 - 52,926,253 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0250,601,955 - 50,984,607 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0245,482,659 - 45,866,078 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0245,668,852 - 46,053,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl245,668,969 - 46,050,564 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0264,809,720 - 65,083,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4245,450,287 - 45,706,518 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera241,201,703 - 41,583,459 (+)NCBICelera
Cytogenetic Map2q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:19056867   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
Arl15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8247,171,377 - 47,555,666 (+)NCBIGRCr8
mRatBN7.2245,438,221 - 45,822,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl245,438,242 - 45,822,559 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx252,543,643 - 52,926,253 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0250,601,955 - 50,984,607 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0245,482,659 - 45,866,078 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0245,668,852 - 46,053,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl245,668,969 - 46,050,564 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0264,809,720 - 65,083,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4245,450,287 - 45,706,518 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera241,201,703 - 41,583,459 (+)NCBICelera
Cytogenetic Map2q14NCBI
ARL15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38553,883,942 - 54,310,573 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl553,883,942 - 54,310,582 (-)EnsemblGRCh38hg38GRCh38
GRCh37553,179,772 - 53,606,403 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36553,216,371 - 53,642,160 (-)NCBINCBI36Build 36hg18NCBI36
Build 34553,216,370 - 53,642,160NCBI
Celera550,134,233 - 50,560,002 (-)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef550,152,974 - 50,579,969 (-)NCBIHuRef
CHM1_1553,183,125 - 53,608,908 (-)NCBICHM1_1
T2T-CHM13v2.0554,711,445 - 55,138,165 (-)NCBIT2T-CHM13v2.0
Arl15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,929,963 - 114,293,998 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,931,041 - 114,293,997 (+)EnsemblGRCm39 Ensembl
GRCm3813113,794,506 - 114,157,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13113,794,505 - 114,157,461 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713114,584,716 - 114,947,669 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613114,915,437 - 115,278,307 (+)NCBIMGSCv36mm8
Celera13118,116,654 - 118,483,898 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1364.02NCBI
Arl15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544613,239,300 - 13,630,593 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544613,239,180 - 13,633,141 (+)NCBIChiLan1.0ChiLan1.0
ARL15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2459,625,223 - 60,057,052 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1557,778,869 - 58,214,021 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0559,713,355 - 60,145,518 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1561,334,731 - 61,766,431 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl561,334,842 - 61,764,635 (+)Ensemblpanpan1.1panPan2
ARL15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1461,090,021 - 61,486,830 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl461,090,096 - 61,484,273 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha460,855,589 - 61,252,277 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0461,581,399 - 61,979,976 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl461,581,425 - 61,979,976 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1461,360,020 - 61,757,617 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0461,487,236 - 61,885,716 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0462,006,205 - 62,402,494 (+)NCBIUU_Cfam_GSD_1.0
Arl15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213204,358,753 - 204,753,971 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648013,295,228 - 13,690,487 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648013,295,255 - 13,690,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1633,341,812 - 33,524,301 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11633,122,591 - 33,575,548 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21635,128,855 - 35,579,625 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARL15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1450,166,070 - 50,597,423 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl450,394,750 - 50,596,357 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666082480,968 - 946,746 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247595,097,398 - 5,495,792 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247595,097,016 - 5,495,834 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arl15
2028 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:75
Interacting mature miRNAs:77
Transcripts:ENSRNOT00000014761, ENSRNOT00000071353
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
12879863Bp402Blood pressure QTL 4020.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24112578956532139Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat

Markers in Region
D2Mco13  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2245,623,302 - 45,623,550 (+)MAPPERmRatBN7.2
Rnor_6.0245,853,640 - 45,853,885NCBIRnor6.0
Rnor_5.0264,884,921 - 64,885,166UniSTSRnor5.0
RGSC_v3.4245,506,028 - 45,506,274RGDRGSC3.4
RGSC_v3.4245,506,029 - 45,506,274UniSTSRGSC3.4
RGSC_v3.1245,434,261 - 45,434,507RGD
Celera241,384,792 - 41,385,037UniSTS
Cytogenetic Map2q14UniSTS
RH133953  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2245,820,894 - 45,821,074 (+)MAPPERmRatBN7.2
Rnor_6.0246,051,500 - 46,051,679NCBIRnor6.0
Rnor_5.0265,082,168 - 65,082,347UniSTSRnor5.0
RGSC_v3.4245,704,851 - 45,705,030UniSTSRGSC3.4
Celera241,581,792 - 41,581,971UniSTS
RH 3.4 Map2296.2UniSTS
Cytogenetic Map2q14UniSTS
BF386307  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2245,738,129 - 45,738,283 (+)MAPPERmRatBN7.2
Rnor_6.0245,968,861 - 45,969,014NCBIRnor6.0
Rnor_5.0265,000,142 - 65,000,295UniSTSRnor5.0
RGSC_v3.4245,622,222 - 45,622,375UniSTSRGSC3.4
Celera241,499,297 - 41,499,450UniSTS
RH 3.4 Map2293.0UniSTS
Cytogenetic Map2q14UniSTS
BF405749  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2245,792,307 - 45,792,457 (+)MAPPERmRatBN7.2
Rnor_6.0246,023,280 - 46,023,429NCBIRnor6.0
Rnor_5.0265,053,948 - 65,054,097UniSTSRnor5.0
RGSC_v3.4245,676,333 - 45,676,482UniSTSRGSC3.4
Celera241,553,524 - 41,553,673UniSTS
RH 3.4 Map2295.1UniSTS
Cytogenetic Map2q14UniSTS
RH141210  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2245,822,087 - 45,822,272 (+)MAPPERmRatBN7.2
Rnor_6.0246,052,693 - 46,052,877NCBIRnor6.0
Rnor_5.0265,083,361 - 65,083,545UniSTSRnor5.0
RGSC_v3.4245,706,044 - 45,706,228UniSTSRGSC3.4
Celera241,582,985 - 41,583,169UniSTS
RH 3.4 Map2295.1UniSTS
Cytogenetic Map2q14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000014761   ⟹   ENSRNOP00000014761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl245,668,969 - 46,050,564 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000071353   ⟹   ENSRNOP00000066751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl245,668,969 - 46,050,564 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107146   ⟹   ENSRNOP00000080447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl245,438,242 - 45,822,559 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112044   ⟹   ENSRNOP00000077797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl245,438,242 - 45,822,559 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112503   ⟹   ENSRNOP00000081848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl245,571,337 - 45,822,559 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117321   ⟹   ENSRNOP00000094092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl245,438,248 - 45,822,559 (+)Ensembl
RefSeq Acc Id: NM_001399590   ⟹   NP_001386519
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8247,171,388 - 47,555,666 (+)NCBI
mRatBN7.2245,438,236 - 45,822,562 (+)NCBI
RefSeq Acc Id: XM_039103512   ⟹   XP_038959440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8247,280,412 - 47,555,666 (+)NCBI
mRatBN7.2245,438,287 - 45,822,562 (+)NCBI
RefSeq Acc Id: XM_039103513   ⟹   XP_038959441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8247,280,401 - 47,370,255 (+)NCBI
mRatBN7.2245,438,271 - 45,638,955 (+)NCBI
RefSeq Acc Id: XM_039103515   ⟹   XP_038959443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8247,171,377 - 47,555,666 (+)NCBI
mRatBN7.2245,438,221 - 45,822,562 (+)NCBI
RefSeq Acc Id: XM_063282575   ⟹   XP_063138645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8247,280,401 - 47,555,666 (+)NCBI
RefSeq Acc Id: XM_063282576   ⟹   XP_063138646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8247,171,402 - 47,555,666 (+)NCBI
RefSeq Acc Id: XM_063282577   ⟹   XP_063138647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8247,286,012 - 47,555,666 (+)NCBI
Ensembl Acc Id: ENSRNOP00000014761   ⟸   ENSRNOT00000014761
Ensembl Acc Id: ENSRNOP00000066751   ⟸   ENSRNOT00000071353
RefSeq Acc Id: XP_038959443   ⟸   XM_039103515
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZSX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959441   ⟸   XM_039103513
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959440   ⟸   XM_039103512
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000080447   ⟸   ENSRNOT00000107146
Ensembl Acc Id: ENSRNOP00000081848   ⟸   ENSRNOT00000112503
Ensembl Acc Id: ENSRNOP00000077797   ⟸   ENSRNOT00000112044
Ensembl Acc Id: ENSRNOP00000094092   ⟸   ENSRNOT00000117321
RefSeq Acc Id: NP_001386519   ⟸   NM_001399590
- UniProtKB: F1M6C4 (UniProtKB/TrEMBL),   A0A8I5ZSX7 (UniProtKB/TrEMBL),   A6I5R8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138646   ⟸   XM_063282576
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZSX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138645   ⟸   XM_063282575
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063138647   ⟸   XM_063282577
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZSX7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6C4-F1-model_v2 AlphaFold F1M6C4 1-204 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691148
Promoter ID:EPDNEW_R1670
Type:multiple initiation site
Name:Arl15_1
Description:ADP-ribosylation factor like GTPase 15
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0245,668,889 - 45,668,949EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597407 AgrOrtholog
BioCyc Gene G2FUF-54342 BioCyc
Ensembl Genes ENSRNOG00000011105 Ensembl
  ENSRNOG00000068448 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000107146.1 UniProtKB/TrEMBL
  ENSRNOT00000112044.1 UniProtKB/TrEMBL
  ENSRNOT00000112503.1 UniProtKB/TrEMBL
  ENSRNOT00000117321.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
NCBI Gene 689079 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 15 UniProtKB/TrEMBL
  PTHR46693 UniProtKB/TrEMBL
Pfam Arf UniProtKB/TrEMBL
PhenoGen Arl15 PhenoGen
PRINTS SAR1GTPBP UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011105 RatGTEx
  ENSRNOG00000068448 RatGTEx
SMART ARF UniProtKB/TrEMBL
  SAR UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5ZPM2_RAT UniProtKB/TrEMBL
  A0A8I5ZSX7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALE9_RAT UniProtKB/TrEMBL
  A6I5R8 ENTREZGENE, UniProtKB/TrEMBL
  F1M6C4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Arl15  ADP-ribosylation factor like GTPase 15  Arl15  ADP-ribosylation factor like GTPase 15  Data merged from RGD:149736530 737654 PROVISIONAL
2021-08-09 Arl15  ADP-ribosylation factor like GTPase 15      Symbol and Name status set to provisional 45752 PROVISIONAL
2015-12-09 Arl15  ADP-ribosylation factor like GTPase 15  Arl15  ADP-ribosylation factor-like 15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Arl15  ADP-ribosylation factor-like 15  LOC689079  similar to ADP-ribosylation factor related protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC689079  similar to ADP-ribosylation factor related protein 2  LOC684187  similar to ADP-ribosylation factor related protein 2  Data merged from RGD:1593869 1643240 APPROVED
2006-11-20 LOC689079  similar to ADP-ribosylation factor related protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC684187  similar to ADP-ribosylation factor related protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL