Rpl21l6 (ribosomal protein L21 like 6) - Rat Genome Database

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Gene: Rpl21l6 (ribosomal protein L21 like 6) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl21l6
Name: ribosomal protein L21 like 6
RGD ID: 11494182
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in endoplasmic reticulum. Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L21 pseudogene; 60S ribosomal protein L21-like; large ribosomal subunit protein eL21-like; LOC108349932
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8234,263,326 - 34,263,861 (+)NCBIGRCr8
mRatBN7.2232,529,306 - 32,531,079 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl232,529,306 - 32,529,788 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0231,378,743 - 31,379,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera228,528,181 - 28,528,750 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)23326999678269996Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063282834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000050384   ⟹   ENSRNOP00000042560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl232,529,306 - 32,529,788 (+)Ensembl
RefSeq Acc Id: XM_063282834   ⟹   XP_063138904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8234,263,326 - 34,263,861 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063138904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042560.4
Ensembl Acc Id: ENSRNOP00000042560   ⟸   ENSRNOT00000050384
RefSeq Acc Id: XP_063138904   ⟸   XM_063282834
- UniProtKB: P20280 (UniProtKB/Swiss-Prot),   D4A4G9 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4G9-F1-model_v2 AlphaFold D4A4G9 1-160 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54641 BioCyc
Ensembl Genes ENSRNOG00000068124 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050384.5 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.70 UniProtKB/TrEMBL
  6.10.250.3260 UniProtKB/TrEMBL
InterPro Ribosomal_L21_sf UniProtKB/TrEMBL
  Ribosomal_L21e UniProtKB/TrEMBL
  Ribosomal_L21e_CS UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
NCBI Gene LOC108349932 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L21 UniProtKB/TrEMBL
  PTHR20981 UniProtKB/TrEMBL
Pfam Ribosomal_L21e UniProtKB/TrEMBL
PhenoGen Rpl21l6 PhenoGen
PROSITE RIBOSOMAL_L21E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000068124 RatGTEx
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt D4A4G9 ENTREZGENE, UniProtKB/TrEMBL
  P20280 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rpl21l6  ribosomal protein L21 like 6  Rpl21l1  ribosomal protein L21 like 1  Name and Symbol changed 629549 APPROVED
2023-09-19 Rpl21l1  ribosomal protein L21 like 1  LOC108349932  60S ribosomal protein L21 pseudogene  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108349932  60S ribosomal protein L21 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL