Gene: Ipo11 (importin 11) Rattus norvegicus
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Symbol:
Ipo11
Name:
importin 11
RGD ID:
1311133
Description:
Predicted to enable small GTPase binding activity. Predicted to be involved in intracellular protein transport. Predicted to be located in cytoplasm. Orthologous to human IPO11 (importin 11).
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
importin-11; LOC310056; similar to importin 11
RGD Orthologs
Alliance Genes
More Info
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More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
IPO11 (importin 11)
HGNC
Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):
Ipo11-lrrc70 (Ipo11-lrrc70 readthrough)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Ipo11 (importin 11)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
IPO11 (importin 11)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Ipo11 (importin 11)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
IPO11 (importin 11)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Ipo11 (importin 11)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
IPO11 (importin 11)
HGNC
HomoloGene, NCBI
Alliance orthologs 3
Homo sapiens (human):
IPO11 (importin 11)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Ipo11 (importin 11)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
ipo11 (importin 11)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
KAP120
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
Impbeta11
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
ipo11
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Related Pseudogenes:
Ipo11-ps1
Latest Assembly:
mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 39,903,316 - 40,076,485 (-) NCBI GRCr8 mRatBN7.2 2 38,169,688 - 38,342,929 (-) NCBI mRatBN7.2 mRatBN7.2 Rnor_6.0 2 37,952,982 - 38,120,451 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 37,954,161 - 38,110,567 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 57,049,753 - 57,215,181 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 38,006,409 - 38,054,430 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 37,926,777 - 37,974,871 (-) NCBI Celera 2 34,041,416 - 34,210,706 (-) NCBI Celera Cytogenetic Map 2 q13 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Disease Annotations - ClinVar
References
Additional References at PubMed
Genomics
Comparative Map Data
Ipo11 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 39,903,316 - 40,076,485 (-) NCBI GRCr8 mRatBN7.2 2 38,169,688 - 38,342,929 (-) NCBI mRatBN7.2 mRatBN7.2 Rnor_6.0 2 37,952,982 - 38,120,451 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 37,954,161 - 38,110,567 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 57,049,753 - 57,215,181 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 38,006,409 - 38,054,430 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 37,926,777 - 37,974,871 (-) NCBI Celera 2 34,041,416 - 34,210,706 (-) NCBI Celera Cytogenetic Map 2 q13 NCBI
IPO11 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 5 62,578,735 - 62,628,589 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 5 62,403,972 - 62,628,582 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 5 61,874,562 - 61,924,416 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 5 61,744,351 - 61,960,165 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 5 61,744,350 - 61,960,164 NCBI Celera 5 58,704,531 - 58,921,350 (+) NCBI Celera Cytogenetic Map 5 q12.1 NCBI HuRef 5 58,830,947 - 58,880,547 (+) NCBI HuRef CHM1_1 5 61,874,345 - 61,924,070 (+) NCBI CHM1_1 T2T-CHM13v2.0 5 63,398,374 - 63,448,302 (+) NCBI T2T-CHM13v2.0
Ipo11-lrrc70 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 13 106,930,947 - 106,972,810 (-) NCBI GRCm39 GRCm39 mm39 GRCm38 13 106,794,439 - 106,836,302 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 Cytogenetic Map 13 D1 NCBI
Ipo11 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955446 6,034,277 - 6,225,640 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955446 6,034,277 - 6,225,627 (-) NCBI ChiLan1.0 ChiLan1.0
IPO11 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 4 51,287,365 - 51,499,916 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 5 49,440,997 - 49,653,546 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 5 51,370,503 - 51,584,256 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 5 53,013,430 - 53,226,598 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 5 53,013,430 - 53,226,598 (-) Ensembl panpan1.1 panPan2
Ipo11 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024407213 197,168,763 - 197,374,904 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936480 6,104,333 - 6,304,413 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936480 6,105,237 - 6,311,335 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
IPO11 (Chlorocebus sabaeus - green monkey)
Ipo11 (Heterocephalus glaber - naked mole-rat)
miRNA Target Status
Predicted Target Of
Count of predictions: 77 Count of miRNA genes: 40 Interacting mature miRNAs: 41 Transcripts: ENSRNOT00000060904, ENSRNOT00000072212, ENSRNOT00000074971 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction