Selenop (selenoprotein P) - Rat Genome Database

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Gene: Selenop (selenoprotein P) Rattus norvegicus
Analyze
Symbol: Selenop
Name: selenoprotein P
RGD ID: 3660
Description: Predicted to enable selenium binding activity. Involved in response to selenium ion. Predicted to be located in extracellular space. Predicted to be active in extracellular region. Orthologous to human SELENOP (selenoprotein P); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: selenoprotein P, plasma, 1; seP; Sepp1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8254,225,736 - 54,236,022 (+)NCBIGRCr8
mRatBN7.2252,498,123 - 52,508,409 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl252,498,339 - 52,508,852 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx259,598,067 - 59,608,378 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0257,656,824 - 57,667,108 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0252,686,704 - 52,697,013 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0253,105,912 - 53,116,198 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl253,109,684 - 53,114,858 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0272,138,104 - 72,148,390 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4252,451,883 - 52,462,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1252,380,331 - 52,390,794 (+)NCBI
Celera248,212,876 - 48,223,163 (+)NCBICelera
Cytogenetic Map2q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SelenopRatcolorectal adenoma  ISORGD:737591151665806mRNA:decreased expression:colorectum (human)RGD 
SelenopRatcolorectal carcinoma  ISORGD:737591151665806mRNA:decreased expression:colorectum (human)RGD 
SelenopRatPulmonary Arterial Hypertension  ISORGD:737591401827129associated with systemic scleroderma;protein:decreased expression:serumRGD 
SelenopRatsystemic scleroderma  ISORGD:737591401827129protein:decreased expression:serumRGD 
Object Symbol
Species
Term
Qualifier
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Reference
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Original Reference(s)
SelenopRatdevelopmental and epileptic encephalopathy  ISORGD:7375918554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathyClinVarPMID:28492532
SelenopRatearly infantile epileptic encephalopathy  ISORGD:7375918554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathyClinVarPMID:28492532
SelenopRatNeurodevelopmental Disorders  ISORGD:7375918554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
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Object Symbol
Species
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Original Reference(s)
SelenopRatadenoma  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:18483336
SelenopRatAnimal Mammary Neoplasms  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:12376462|PMID:16316942
SelenopRatCadmium Poisoning  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:20643113
SelenopRatcarcinoma  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:12376462|PMID:16316942
SelenopRatColorectal Neoplasms  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:18483336
SelenopRatendometriosis  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:20864642
SelenopRatExperimental Liver Cirrhosis  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
SelenopRatExperimental Mammary Neoplasms  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:12376462|PMID:16316942
SelenopRatInsulin Resistance  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:14714311
SelenopRatLung Neoplasms  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:19058871
SelenopRatmale infertility  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:17961124
SelenopRatNerve Degeneration  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:18172410
SelenopRatnervous system disease  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:14704310|PMID:17961124
SelenopRatneurodegenerative disease  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:15964507
SelenopRatProstatic Neoplasms  ISORGD:73759111554173CTD Direct Evidence: marker/mechanismCTDPMID:12235003
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Original Reference(s)
SelenopRat(+)-catechin multiple interactionsISORGD:7375916480464[Catechin co-treated with Grape Seed Proanthocyanidins] results in decreased expression of SELENOP mRNACTDPMID:24763279
SelenopRat(2,4,5-trichlorophenoxy)acetic acid decreases expressionISORGD:73759264804642,4,5-Trichlorophenoxyacetic Acid results in decreased expression of SELENOP mRNACTDPMID:18579281
SelenopRat1,2-dimethylhydrazine decreases expressionISORGD:73759264804641,2-Dimethylhydrazine results in decreased expression of SELENOP mRNACTDPMID:22206623
SelenopRat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of SELENOP mRNACTDPMID:25380136|PMID:30723492
SelenopRat17alpha-ethynylestradiol affects expressionISORGD:7375926480464Ethinyl Estradiol affects the expression of SELENOP mRNACTDPMID:17555576
SelenopRat17alpha-ethynylestradiol decreases expressionISORGD:7375926480464Ethinyl Estradiol results in decreased expression of SELENOP mRNACTDPMID:16174780|PMID:17942748|PMID:19400957
SelenopRat17alpha-ethynylestradiol multiple interactionsISORGD:7375926480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in decreased expression of SELENOP mRNACTDPMID:17942748
SelenopRat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of SELENOP mRNACTDPMID:16174780|PMID:19400957
SelenopRat17beta-estradiol multiple interactionsISORGD:7375916480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of SELENOP mRNACTDPMID:19619570
SelenopRat17beta-estradiol multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of SELENOP mRNACTDPMID:32741896
SelenopRat17beta-estradiol increases expressionISORGD:7375916480464Estradiol results in increased expression of SELENOP mRNACTDPMID:21795739
SelenopRat17beta-estradiol decreases expressionISORGD:7375916480464Estradiol results in decreased expression of SELENOP mRNACTDPMID:19167446|PMID:19619570|PMID:23019147
SelenopRat17beta-estradiol affects expressionISORGD:7375916480464Estradiol affects the expression of SELENOP mRNACTDPMID:22574217
SelenopRat17beta-estradiol multiple interactionsISORGD:7375926480464Estradiol inhibits the reaction [Lipopolysaccharides results in increased expression of SELENOP mRNA]CTDPMID:16977382
SelenopRat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of SELENOP mRNACTDPMID:32741896
SelenopRat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one multiple interactionsISORGD:7375916480464resveratrol inhibits the reaction [Metribolone results in increased expression of SELENOP mRNA]CTDPMID:18586690
SelenopRat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one increases expressionISORGD:7375916480464Metribolone results in increased expression of SELENOP mRNACTDPMID:17131305|PMID:18586690
SelenopRat17beta-hydroxy-5alpha-androstan-3-one increases expressionISORGD:7375916480464Dihydrotestosterone results in increased expression of SELENOP mRNACTDPMID:27720946|PMID:29581250
SelenopRat17beta-hydroxy-5alpha-androstan-3-one multiple interactionsISORGD:73759164804646-(3,4-dihydro-1H-isoquinolin-2-yl)-N-(6-methylpyridin-2-yl)nicotinamide analog inhibits the reaction [Dihydrotestosterone results in increased expression of SELENOP mRNA]CTDPMID:27720946
SelenopRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISORGD:7375926480464[Tetrachlorodibenzodioxin co-treated with bisphenol A co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with Diethylhexyl Phthalate co-treated with Dietary more ...CTDPMID:23756648

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Biological Process
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Original Reference(s)
SelenopRatbrain development acts_upstream_of_or_withinIEAUniProtKB:P70274|ensembl:ENSMUSP000001243051600115GO_REF:0000107EnsemblGO_REF:0000107
SelenopRatbrain development acts_upstream_of_or_withinISORGD:7375921624291MGI:2656912 PMID:14704310RGDPMID:14704310
SelenopRatlocomotory behavior acts_upstream_of_or_withinIEAUniProtKB:P70274|ensembl:ENSMUSP000001243051600115GO_REF:0000107EnsemblGO_REF:0000107
SelenopRatlocomotory behavior acts_upstream_of_or_withinISORGD:7375921624291MGI:2652747|MGI:2656912 PMID:12574155, PMID:14664694, PMID:14704310RGDPMID:12574155|PMID:14664694|PMID:14704310
SelenopRatpost-embryonic development acts_upstream_of_or_withinISORGD:7375921624291MGI:2652747|MGI:2656912 PMID:14664694, PMID:14704310RGDPMID:14664694|PMID:14704310
SelenopRatpost-embryonic development acts_upstream_of_or_withinIEAUniProtKB:P70274|ensembl:ENSMUSP000001243051600115GO_REF:0000107EnsemblGO_REF:0000107
SelenopRatregulation of growth acts_upstream_of_or_withinIEAUniProtKB:P70274|ensembl:ENSMUSP000001243051600115GO_REF:0000107EnsemblGO_REF:0000107
SelenopRatregulation of growth acts_upstream_of_or_withinISORGD:7375921624291MGI:2652747|MGI:2656912 PMID:12574155, PMID:14664694, PMID:14704310RGDPMID:12574155|PMID:14664694|PMID:14704310
SelenopRatresponse to selenium ion  IEP 2306614 RGD 
SelenopRatselenium compound metabolic process acts_upstream_of_or_withinIEAUniProtKB:P70274|ensembl:ENSMUSP000001243051600115GO_REF:0000107EnsemblGO_REF:0000107
SelenopRatselenium compound metabolic process acts_upstream_of_or_withinISORGD:7375921624291MGI:2652747|MGI:2656912 PMID:12574155, PMID:14664694, PMID:14704310RGDPMID:12574155|PMID:14664694|PMID:14704310
SelenopRatselenium compound metabolic process involved_inIBAMGI:894288|PANTHER:PTN000802419|ZFIN:ZDB-GENE-030311-11600115GO_REF:0000033GO_CentralGO_REF:0000033
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Cellular Component

  
Object Symbol
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Original Reference(s)
SelenopRatextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
SelenopRatextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
SelenopRatextracellular region is_active_inIBAMGI:894288|PANTHER:PTN000802419|ZFIN:ZDB-GENE-030311-11600115GO_REF:0000033GO_CentralGO_REF:0000033
SelenopRatextracellular space located_inIEAUniProtKB:P70274|ensembl:ENSMUSP000001243051600115GO_REF:0000107EnsemblGO_REF:0000107
SelenopRatextracellular space located_inISORGD:7375921624291 PMID:12574155, PMID:14664694, PMID:24274065RGDPMID:12574155|PMID:14664694|PMID:24274065

Molecular Function

  
Object Symbol
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Term
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Reference
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Original Reference(s)
SelenopRatprotein binding enablesISORGD:7375921624291UniProtKB:A2ARV4 PMID:18174160RGDPMID:18174160
SelenopRatselenium binding enablesIEAUniProtKB:P70274|ensembl:ENSMUSP000001243051600115GO_REF:0000107EnsemblGO_REF:0000107
SelenopRatselenium binding enablesISORGD:7375921624291 PMID:12574155RGDPMID:12574155
SelenopRatselenium binding enablesIBAMGI:894288|PANTHER:PTN0008024191600115GO_REF:0000033GO_CentralGO_REF:0000033
SelenopRatselenium binding enablesIEAInterPro:IPR0379411600115GO_REF:0000002InterProGO_REF:0000002


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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The cDNA for rat selenoprotein P contains 10 TGA codons in the open reading frame. Hill KE, etal., J Biol Chem 1991 Jun 5;266(16):10050-3.
4. Expression of Selenoprotein Genes and Association with Selenium Status in Colorectal Adenoma and Colorectal Cancer. Hughes DJ, etal., Nutrients. 2018 Nov 21;10(11). pii: nu10111812. doi: 10.3390/nu10111812.
5. Mass spectrometric characterization of full-length rat selenoprotein P and three isoforms shortened at the C terminus. Evidence that three UGA codons in the mRNA open reading frame have alternative functions of specifying selenocysteine insertion or translation termination. Ma S, etal., J Biol Chem 2002 Apr 12;277(15):12749-54.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Molecular cloning of cDNA encoding a bovine selenoprotein P-like protein containing 12 selenocysteines and a (His-Pro) rich domain insertion, and its regional expression. Saijoh K, etal., Brain Res Mol Brain Res 1995 Jun;30(2):301-11.
12. Selenium requirements are higher for glutathione peroxidase-1 mRNA than gpx1 activity in rat testis. Schriever SC, etal., Exp Biol Med (Maywood). 2009 May;234(5):513-21. Epub 2009 Feb 20.
13. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
14. Selenium and Copper as Biomarkers for Pulmonary Arterial Hypertension in Systemic Sclerosis. Sun Q, etal., Nutrients. 2020 Jun 25;12(6):1894. doi: 10.3390/nu12061894.
1 to 14 of 14 rows
PMID:7931697   PMID:8889548   PMID:12574155   PMID:12775843   PMID:12911312   PMID:14664694   PMID:14704310   PMID:15489334   PMID:15712351   PMID:17314095   PMID:17986386   PMID:18972406  
PMID:19199708   PMID:20360971   PMID:20959537   PMID:22479358   PMID:22761431   PMID:23064117   PMID:23533145   PMID:24157689   PMID:24257750   PMID:24274065   PMID:25063811   PMID:27645994  
PMID:28465347   PMID:29636330  



Selenop
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8254,225,736 - 54,236,022 (+)NCBIGRCr8
mRatBN7.2252,498,123 - 52,508,409 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl252,498,339 - 52,508,852 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx259,598,067 - 59,608,378 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0257,656,824 - 57,667,108 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0252,686,704 - 52,697,013 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0253,105,912 - 53,116,198 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl253,109,684 - 53,114,858 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0272,138,104 - 72,148,390 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4252,451,883 - 52,462,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1252,380,331 - 52,390,794 (+)NCBI
Celera248,212,876 - 48,223,163 (+)NCBICelera
Cytogenetic Map2q16NCBI
SELENOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38542,799,880 - 42,811,892 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl542,799,880 - 42,887,392 (-)EnsemblGRCh38hg38GRCh38
GRCh37542,799,982 - 42,811,994 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36542,835,739 - 42,847,781 (-)NCBINCBI36Build 36hg18NCBI36
Build 34542,835,746 - 42,847,717NCBI
Celera542,689,516 - 42,701,558 (-)NCBICelera
Cytogenetic Map5p12NCBI
HuRef542,751,403 - 42,763,445 (-)NCBIHuRef
CHM1_1542,801,878 - 42,813,920 (-)NCBICHM1_1
T2T-CHM13v2.0543,052,823 - 43,064,836 (-)NCBIT2T-CHM13v2.0
Selenop
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39153,300,249 - 3,309,992 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl153,298,029 - 3,309,990 (+)EnsemblGRCm39 Ensembl
GRCm38153,270,767 - 3,280,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl153,268,547 - 3,280,508 (+)EnsemblGRCm38mm10GRCm38
MGSCv37153,220,767 - 3,230,508 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36153,220,996 - 3,230,508 (+)NCBIMGSCv36mm8
Celera153,135,278 - 3,145,023 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map151.84NCBI
Selenop
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542626,951,003 - 26,961,839 (-)NCBIChiLan1.0ChiLan1.0
SELENOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2467,522,907 - 67,535,008 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1565,676,533 - 65,688,634 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0567,570,087 - 67,582,192 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1572,615,983 - 72,628,069 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl572,619,607 - 72,627,213 (+)Ensemblpanpan1.1panPan2
SELENOP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1466,953,060 - 66,964,162 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl466,956,405 - 66,959,043 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha466,635,228 - 66,646,329 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0467,462,747 - 67,473,870 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl467,466,077 - 67,468,723 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1467,206,571 - 67,217,687 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0467,337,043 - 67,348,110 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0467,872,590 - 67,883,663 (+)NCBIUU_Cfam_GSD_1.0
Selenop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213231,204,901 - 231,215,935 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936518155,905 - 166,932 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1627,537,885 - 27,631,130 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11627,537,885 - 27,547,863 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21629,021,931 - 29,031,923 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SELENOP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1441,544,098 - 41,556,152 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607131,987,207 - 31,999,405 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Selenop
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475912,207,251 - 12,218,857 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Selenop
60 total Variants

1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat

1 to 10 of 45 rows
D2Got311  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2252,499,346 - 52,499,525 (+)MAPPERmRatBN7.2
Rnor_6.0253,107,136 - 53,107,314NCBIRnor6.0
Rnor_5.0272,139,328 - 72,139,506UniSTSRnor5.0
RGSC_v3.4252,453,107 - 52,453,285UniSTSRGSC3.4
Celera248,214,100 - 48,214,278UniSTS
Cytogenetic Map2q16UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 22 of 22 rows
RefSeq Transcripts NM_001083911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC059137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF389559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB699091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB745388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D25221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN933732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ082498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M63574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 22 of 22 rows

Ensembl Acc Id: ENSRNOT00000086590   ⟹   ENSRNOP00000069020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl252,498,339 - 52,508,852 (+)Ensembl
Rnor_6.0 Ensembl253,109,684 - 53,114,858 (+)Ensembl
RefSeq Acc Id: NM_001083911   ⟹   NP_001077380
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8254,225,736 - 54,236,022 (+)NCBI
mRatBN7.2252,498,123 - 52,508,409 (+)NCBI
Rnor_6.0253,105,912 - 53,116,198 (+)NCBI
Rnor_5.0272,138,104 - 72,148,390 (+)NCBI
RGSC_v3.4252,451,883 - 52,462,263 (+)RGD
Celera248,212,876 - 48,223,163 (+)RGD
Sequence:
RefSeq Acc Id: NM_019192   ⟹   NP_062065
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8254,225,912 - 54,236,022 (+)NCBI
mRatBN7.2252,498,299 - 52,508,409 (+)NCBI
Rnor_6.0253,106,088 - 53,116,198 (+)NCBI
Rnor_5.0272,138,104 - 72,148,390 (+)NCBI
RGSC_v3.4252,451,883 - 52,462,263 (+)RGD
Celera248,213,052 - 48,223,163 (+)NCBI
Sequence:
1 to 11 of 11 rows
Protein RefSeqs NP_001077380 (Get FASTA)   NCBI Sequence Viewer  
  NP_062065 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42129 (Get FASTA)   NCBI Sequence Viewer  
  AAH72539 (Get FASTA)   NCBI Sequence Viewer  
  BAA04950 (Get FASTA)   NCBI Sequence Viewer  
  EDL75746 (Get FASTA)   NCBI Sequence Viewer  
  EDL75747 (Get FASTA)   NCBI Sequence Viewer  
  EDL75748 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069020
  ENSRNOP00000069020.2
GenBank Protein P25236 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_062065   ⟸   NM_019192
- Peptide Label: precursor
- UniProtKB: P25236 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001077380   ⟸   NM_001083911
- Peptide Label: precursor
- UniProtKB: P25236 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069020   ⟸   ENSRNOT00000086590
Selenoprotein P N-terminal


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 21 of 21 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-54208 BioCyc
Ensembl Genes ENSRNOG00000053086 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000086590 ENTREZGENE
  ENSRNOT00000086590.2 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6890056 IMAGE-MGC_LOAD
  IMAGE:7104195 IMAGE-MGC_LOAD
InterPro Selenoprotein-P_N UniProtKB/Swiss-Prot
  SelP_C UniProtKB/Swiss-Prot
  SeP UniProtKB/Swiss-Prot
KEGG Report rno:29360 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72854 IMAGE-MGC_LOAD
  MGC:91714 IMAGE-MGC_LOAD
NCBI Gene 29360 ENTREZGENE
PANTHER PTHR10105 UniProtKB/Swiss-Prot
  SELENOPROTEIN P UniProtKB/Swiss-Prot
Pfam SelP_C UniProtKB/Swiss-Prot
  SelP_N UniProtKB/Swiss-Prot
PhenoGen Selenop PhenoGen
RatGTEx ENSRNOG00000053086 RatGTEx
UniProt A0A0G2JU99_RAT UniProtKB/TrEMBL
  P25236 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-09-28 Selenop  selenoprotein P  Sepp1  selenoprotein P, plasma, 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Sepp1  selenoprotein P, plasma, 1       Name updated 70584 APPROVED