SELENOP (selenoprotein P) - Rat Genome Database

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Gene: SELENOP (selenoprotein P) Sus scrofa
Analyze
Symbol: SELENOP
Name: selenoprotein P
RGD ID: 13844646
Description: ENCODES a protein that exhibits selenium binding (inferred); INVOLVED IN brain development (ortholog); locomotory behavior (ortholog); post-embryonic development (ortholog); ASSOCIATED WITH adenoma (ortholog); Animal Mammary Neoplasms (ortholog); Cadmium Poisoning (ortholog); FOUND IN extracellular space (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: selenoprotein P, plasma, 1; SEPP1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1627,537,885 - 27,631,130 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11627,537,885 - 27,547,863 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21629,021,931 - 29,031,923 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
SELENOP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1627,537,885 - 27,631,130 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11627,537,885 - 27,547,863 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21629,021,931 - 29,031,923 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SELENOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38542,799,880 - 42,811,892 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl542,799,880 - 42,887,392 (-)EnsemblGRCh38hg38GRCh38
GRCh37542,799,982 - 42,811,994 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36542,835,739 - 42,847,781 (-)NCBINCBI36Build 36hg18NCBI36
Build 34542,835,746 - 42,847,717NCBI
Celera542,689,516 - 42,701,558 (-)NCBICelera
Cytogenetic Map5p12NCBI
HuRef542,751,403 - 42,763,445 (-)NCBIHuRef
CHM1_1542,801,878 - 42,813,920 (-)NCBICHM1_1
T2T-CHM13v2.0543,052,823 - 43,064,836 (-)NCBIT2T-CHM13v2.0
Selenop
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39153,300,249 - 3,309,992 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl153,298,029 - 3,309,990 (+)EnsemblGRCm39 Ensembl
GRCm38153,270,767 - 3,280,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl153,268,547 - 3,280,508 (+)EnsemblGRCm38mm10GRCm38
MGSCv37153,220,767 - 3,230,508 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36153,220,996 - 3,230,508 (+)NCBIMGSCv36mm8
Celera153,135,278 - 3,145,023 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map151.84NCBI
Selenop
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8254,225,736 - 54,236,022 (+)NCBIGRCr8
mRatBN7.2252,498,123 - 52,508,409 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl252,498,339 - 52,508,852 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx259,598,067 - 59,608,378 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0257,656,824 - 57,667,108 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0252,686,704 - 52,697,013 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0253,105,912 - 53,116,198 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl253,109,684 - 53,114,858 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0272,138,104 - 72,148,390 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4252,451,883 - 52,462,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1252,380,331 - 52,390,794 (+)NCBI
Celera248,212,876 - 48,223,163 (+)NCBICelera
Cytogenetic Map2q16NCBI
Selenop
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542626,951,003 - 26,961,839 (-)NCBIChiLan1.0ChiLan1.0
SELENOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2467,522,907 - 67,535,008 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1565,676,533 - 65,688,634 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0567,570,087 - 67,582,192 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1572,615,983 - 72,628,069 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl572,619,607 - 72,627,213 (+)Ensemblpanpan1.1panPan2
SELENOP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1466,953,060 - 66,964,162 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl466,956,405 - 66,959,043 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha466,635,228 - 66,646,329 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0467,462,747 - 67,473,870 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl467,466,077 - 67,468,723 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1467,206,571 - 67,217,687 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0467,337,043 - 67,348,110 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0467,872,590 - 67,883,663 (+)NCBIUU_Cfam_GSD_1.0
Selenop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213231,204,901 - 231,215,935 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936518155,905 - 166,932 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1441,544,098 - 41,556,152 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607131,987,207 - 31,999,405 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Selenop
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475912,207,251 - 12,218,857 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SELENOP
269 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000031007   ⟹   ENSSSCP00000024304
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1627,537,885 - 27,631,130 (-)Ensembl
RefSeq Acc Id: NM_001134823   ⟹   NP_001128295
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11627,537,885 - 27,547,863 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001128295 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABL61084 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00005028282.1
  ENSSSCP00050034981.1
  ENSSSCP00060021404.1
RefSeq Acc Id: NP_001128295   ⟸   NM_001134823
- Peptide Label: precursor
- UniProtKB: A1E951 (UniProtKB/TrEMBL),   A0A8D1TKN1 (UniProtKB/TrEMBL),   A0A8D0JG79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000024304   ⟸   ENSSSCT00000031007

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021208 Ensembl
  ENSSSCG00005028979 UniProtKB/TrEMBL
  ENSSSCG00050059812 UniProtKB/TrEMBL
  ENSSSCG00060036934 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00005046030.1 UniProtKB/TrEMBL
  ENSSSCT00050081482.1 UniProtKB/TrEMBL
  ENSSSCT00060050034.1 UniProtKB/TrEMBL
InterPro Selenoprotein-P_N UniProtKB/TrEMBL
  SelP_C UniProtKB/TrEMBL
  SeP UniProtKB/TrEMBL
KEGG Report ssc:100037964 UniProtKB/TrEMBL
NCBI Gene SELENOP ENTREZGENE
PANTHER PTHR10105 UniProtKB/TrEMBL
  SELENOPROTEIN P UniProtKB/TrEMBL
Pfam SelP_C UniProtKB/TrEMBL
  SelP_N UniProtKB/TrEMBL
UniProt A0A8D0JG79 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TKN1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VAU7_PIG UniProtKB/TrEMBL
  A1E951 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92691 ENTREZGENE