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Gene: Ift80 (intraflagellar transport 80) Rattus norvegicus
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Symbol: Ift80
Name: intraflagellar transport 80
Description: Predicted to be involved in several processes, including non-motile cilium assembly; osteoblast differentiation; and skeletal system development. Predicted to localize to the centrosome; cilium; and intraciliary transport particle B. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 2. Orthologous to human IFT80 (intraflagellar transport 80); INTERACTS WITH 2,4-dinitrotoluene; furan; methamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: intraflagellar transport 80 homolog; intraflagellar transport 80 homolog (Chlamydomonas); intraflagellar transport protein 80 homolog; LOC295106; RGD1312006; similar to RIKEN cDNA 4921524P20; WD repeat domain 56; WD repeat-containing protein 56; Wdr56
Orthologs:
Homo sapiens (human) : IFT80 (intraflagellar transport 80)  HGNC  Alliance
Mus musculus (house mouse) : Ift80 (intraflagellar transport 80)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ift80 (intraflagellar transport 80)
Pan paniscus (bonobo/pygmy chimpanzee) : IFT80 (intraflagellar transport 80)
Canis lupus familiaris (dog) : IFT80 (intraflagellar transport 80)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ift80 (intraflagellar transport 80)
Sus scrofa (pig) : IFT80 (intraflagellar transport 80)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02165,506,878 - 165,600,748 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2165,505,810 - 165,600,748 (-)Ensembl
Rnor_5.02184,867,651 - 184,961,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42158,892,673 - 158,987,059 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12158,842,636 - 158,937,022 (-)NCBI
Celera2147,496,487 - 147,590,825 (-)NCBICelera
Cytogenetic Map2q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ift80
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1312006
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.