Ift80 (intraflagellar transport 80) - Rat Genome Database

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Gene: Ift80 (intraflagellar transport 80) Rattus norvegicus
Analyze
Symbol: Ift80
Name: intraflagellar transport 80
RGD ID: 1312006
Description: Predicted to be involved in cilium assembly. Predicted to act upstream of or within several processes, including negative regulation of keratinocyte proliferation; non-motile cilium assembly; and skeletal system development. Predicted to be located in ciliary basal body. Predicted to be part of intraciliary transport particle B. Predicted to be active in 9+0 non-motile cilium and centrosome. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 2. Orthologous to human IFT80 (intraflagellar transport 80); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: intraflagellar transport 80 homolog; intraflagellar transport 80 homolog (Chlamydomonas); intraflagellar transport protein 80 homolog; LOC295106; RGD1312006; similar to RIKEN cDNA 4921524P20; WD repeat domain 56; WD repeat-containing protein 56; Wdr56
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82155,455,773 - 155,550,082 (-)NCBIGRCr8
mRatBN7.22153,144,707 - 153,240,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2153,145,795 - 153,240,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2160,275,443 - 160,369,696 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02158,325,966 - 158,420,213 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02152,958,736 - 153,052,980 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02165,506,878 - 165,600,748 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2165,505,810 - 165,600,748 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02184,867,651 - 184,961,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42158,892,673 - 158,987,059 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12158,842,636 - 158,937,022 (-)NCBI
Celera2147,496,487 - 147,590,825 (-)NCBICelera
Cytogenetic Map2q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
9+0 non-motile cilium  (ISO)
centrosome  (IBA,IEA,ISO)
ciliary basal body  (ISO)
cilium  (IBA,IEA,ISO)
cytoplasm  (IEA)
intraciliary transport particle B  (IBA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:19253336   PMID:21227999   PMID:21703454   PMID:22771375   PMID:23333501   PMID:23810713   PMID:24596149   PMID:24927541   PMID:25443296   PMID:26098911   PMID:26996322  


Genomics

Comparative Map Data
Ift80
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82155,455,773 - 155,550,082 (-)NCBIGRCr8
mRatBN7.22153,144,707 - 153,240,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2153,145,795 - 153,240,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2160,275,443 - 160,369,696 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02158,325,966 - 158,420,213 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02152,958,736 - 153,052,980 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02165,506,878 - 165,600,748 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2165,505,810 - 165,600,748 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02184,867,651 - 184,961,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42158,892,673 - 158,987,059 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12158,842,636 - 158,937,022 (-)NCBI
Celera2147,496,487 - 147,590,825 (-)NCBICelera
Cytogenetic Map2q32NCBI
IFT80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383160,256,986 - 160,399,225 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3160,256,986 - 160,399,880 (-)EnsemblGRCh38hg38GRCh38
GRCh373159,974,774 - 160,117,013 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363161,457,482 - 161,600,014 (-)NCBINCBI36Build 36hg18NCBI36
Celera3158,396,141 - 158,538,687 (-)NCBICelera
Cytogenetic Map3q25.33NCBI
HuRef3157,373,426 - 157,515,902 (-)NCBIHuRef
CHM1_13159,937,988 - 160,080,209 (-)NCBICHM1_1
T2T-CHM13v2.03163,031,586 - 163,173,837 (-)NCBIT2T-CHM13v2.0
Ift80
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39368,799,832 - 68,911,939 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl368,799,832 - 68,911,892 (-)EnsemblGRCm39 Ensembl
GRCm38368,892,499 - 69,004,680 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl368,892,499 - 69,004,570 (-)EnsemblGRCm38mm10GRCm38
MGSCv37368,696,421 - 68,808,492 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36368,980,431 - 69,092,394 (-)NCBIMGSCv36mm8
Celera369,005,128 - 69,112,374 (-)NCBICelera
Cytogenetic Map3E1NCBI
cM Map332.07NCBI
Ift80
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544810,808,940 - 10,819,655 (-)NCBIChiLan1.0ChiLan1.0
IFT80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22158,193,564 - 158,335,974 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13158,198,280 - 158,340,492 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03157,279,076 - 157,421,478 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13165,327,511 - 165,469,795 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3165,329,056 - 165,454,905 (-)Ensemblpanpan1.1panPan2
IFT80
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13426,332,456 - 26,455,428 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3430,374,586 - 30,497,664 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03426,388,720 - 26,512,021 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3426,387,471 - 26,511,904 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13426,318,615 - 26,441,864 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03426,279,456 - 26,402,532 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03426,519,525 - 26,642,618 (-)NCBIUU_Cfam_GSD_1.0
Ift80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560292,197,246 - 92,324,932 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936708238,268 - 362,519 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936708238,302 - 362,537 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT80
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1399,943,208 - 100,078,148 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11399,943,203 - 100,078,148 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213108,339,643 - 108,382,860 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IFT80
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11530,441,724 - 30,577,437 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1530,461,526 - 30,577,484 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660412,961,984 - 3,104,898 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ift80
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473038,003,902 - 38,144,277 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473038,003,437 - 38,144,312 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ift80
266 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:368
Count of miRNA genes:205
Interacting mature miRNAs:240
Transcripts:ENSRNOT00000013216
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
631520Bp73Blood pressure QTL 730.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147686913168355276Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1354594Despr10Despair related QTL 100.00000249locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072175950118Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072175950118Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2152413072175950118Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072175950118Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072175950118Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2152413072175950118Rat

Markers in Region
RH130576  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22153,145,893 - 153,146,110 (+)MAPPERmRatBN7.2
Rnor_6.02165,506,978 - 165,507,194NCBIRnor6.0
Rnor_5.02184,867,751 - 184,867,967UniSTSRnor5.0
RGSC_v3.42158,892,773 - 158,892,989UniSTSRGSC3.4
Celera2147,496,587 - 147,496,803UniSTS
RH 3.4 Map21007.2UniSTS
Cytogenetic Map2q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 20 31 16 17 16 74 33 41 11
Low 3 23 26 25 2 25 8 10 2 8
Below cutoff 1

Sequence


RefSeq Acc Id: ENSRNOT00000013216   ⟹   ENSRNOP00000013216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2153,145,795 - 153,240,024 (-)Ensembl
Rnor_6.0 Ensembl2165,506,879 - 165,600,748 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091140   ⟹   ENSRNOP00000069823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2153,157,697 - 153,225,994 (-)Ensembl
Rnor_6.0 Ensembl2165,505,810 - 165,591,110 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116655   ⟹   ENSRNOP00000085865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2153,145,795 - 153,226,539 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117415   ⟹   ENSRNOP00000097526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2153,149,511 - 153,226,212 (-)Ensembl
RefSeq Acc Id: NM_001013911   ⟹   NP_001013933
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82155,455,773 - 155,550,003 (-)NCBI
mRatBN7.22153,145,794 - 153,240,024 (-)NCBI
Rnor_6.02165,506,878 - 165,600,748 (-)NCBI
Rnor_5.02184,867,651 - 184,961,866 (-)NCBI
RGSC_v3.42158,892,673 - 158,987,059 (-)RGD
Celera2147,496,487 - 147,590,825 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102020   ⟹   XP_038957948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82155,455,773 - 155,540,362 (-)NCBI
mRatBN7.22153,144,707 - 153,239,896 (-)NCBI
RefSeq Acc Id: XM_063281591   ⟹   XP_063137661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82155,455,773 - 155,550,082 (-)NCBI
RefSeq Acc Id: NP_001013933   ⟸   NM_001013911
- UniProtKB: Q66HB3 (UniProtKB/Swiss-Prot),   A0A8I6GEE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069823   ⟸   ENSRNOT00000091140
RefSeq Acc Id: ENSRNOP00000013216   ⟸   ENSRNOT00000013216
RefSeq Acc Id: XP_038957948   ⟸   XM_039102020
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000097526   ⟸   ENSRNOT00000117415
RefSeq Acc Id: ENSRNOP00000085865   ⟸   ENSRNOT00000116655
RefSeq Acc Id: XP_063137661   ⟸   XM_063281591
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HB3-F1-model_v2 AlphaFold Q66HB3 1-777 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691369
Promoter ID:EPDNEW_R1894
Type:initiation region
Name:Ift80_1
Description:intraflagellar transport 80
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02165,600,716 - 165,600,776EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1312006 AgrOrtholog
BioCyc Gene G2FUF-52844 BioCyc
Ensembl Genes ENSRNOG00000009808 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055004600 UniProtKB/Swiss-Prot
  ENSRNOG00060001504 UniProtKB/Swiss-Prot
  ENSRNOG00065026106 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013216 ENTREZGENE
  ENSRNOT00000013216.7 UniProtKB/Swiss-Prot
  ENSRNOT00000091140.2 UniProtKB/TrEMBL
  ENSRNOT00000116655.1 UniProtKB/TrEMBL
  ENSRNOT00000117415.1 UniProtKB/TrEMBL
  ENSRNOT00055007288 UniProtKB/Swiss-Prot
  ENSRNOT00060002258 UniProtKB/Swiss-Prot
  ENSRNOT00065045073 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.470 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113994 IMAGE-MGC_LOAD
  IMAGE:7115382 IMAGE-MGC_LOAD
InterPro Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:295106 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93952 IMAGE-MGC_LOAD
  MGC:93991 IMAGE-MGC_LOAD
NCBI Gene 295106 ENTREZGENE
PANTHER INTRAFLAGELLAR TRANSPORT PROTEIN 80 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OUTER SEGMENT 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ift80 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009808 RatGTEx
  ENSRNOG00055004600 RatGTEx
  ENSRNOG00060001504 RatGTEx
  ENSRNOG00065026106 RatGTEx
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50998 UniProtKB/TrEMBL
UniProt A0A8I6GEE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GM38_RAT UniProtKB/TrEMBL
  A0A8L2UPV2_RAT UniProtKB/TrEMBL
  A6J5M6_RAT UniProtKB/TrEMBL
  IFT80_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-09 Ift80  intraflagellar transport 80  Ift80  intraflagellar transport 80 homolog (Chlamydomonas)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ift80  intraflagellar transport 80 homolog (Chlamydomonas)  RGD1312006  similar to RIKEN cDNA 4921524P20  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1312006  similar to RIKEN cDNA 4921524P20  RGD1312006_predicted  similar to RIKEN cDNA 4921524P20 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1312006_predicted  similar to RIKEN cDNA 4921524P20 (predicted)  LOC295106_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC295106_predicted  similar to RIKEN cDNA 4921524P20 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL