Cert1 (ceramide transporter 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cert1 (ceramide transporter 1) Rattus norvegicus
Analyze
Symbol: Cert1
Name: ceramide transporter 1
RGD ID: 1309131
Description: Predicted to enable several functions, including ceramide transfer activity; identical protein binding activity; and phosphatidylinositol-4-phosphate binding activity. Predicted to be involved in ER to Golgi ceramide transport and intermembrane sphingolipid transfer. Predicted to act upstream of or within several processes, including ceramide metabolic process; in utero embryonic development; and mitochondrion morphogenesis. Predicted to be located in several cellular components, including Golgi apparatus; mitochondrion; and nucleoplasm. Predicted to be part of collagen trimer. Predicted to colocalize with perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 34. Orthologous to human CERT1 (ceramide transporter 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; aldehydo-D-glucose.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: alpha 3 type IV collagen binding protein; Col4a3bp; collagen type IV alpha 3 binding protein; collagen type IV alpha-3-binding protein; collagen, type IV, alpha 3 (Goodpasture antigen) binding protein; LOC365652; procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2227,882,546 - 27,987,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl227,882,555 - 27,987,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx234,930,260 - 35,034,747 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0233,030,339 - 33,134,827 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0227,844,444 - 27,949,018 (+)NCBIRnor_WKY
Rnor_6.0227,365,145 - 27,469,797 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl227,365,148 - 27,469,779 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0246,477,805 - 46,582,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4227,012,330 - 27,117,057 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1226,932,579 - 27,035,278 (+)NCBI
Celera223,928,949 - 24,033,427 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11007769   PMID:14685229   PMID:16895911   PMID:18165232   PMID:18184806   PMID:19139267   PMID:19555756   PMID:24642596   PMID:27996060  


Genomics

Comparative Map Data
Cert1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2227,882,546 - 27,987,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl227,882,555 - 27,987,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx234,930,260 - 35,034,747 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0233,030,339 - 33,134,827 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0227,844,444 - 27,949,018 (+)NCBIRnor_WKY
Rnor_6.0227,365,145 - 27,469,797 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl227,365,148 - 27,469,779 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0246,477,805 - 46,582,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4227,012,330 - 27,117,057 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1226,932,579 - 27,035,278 (+)NCBI
Celera223,928,949 - 24,033,427 (+)NCBICelera
Cytogenetic Map2q12NCBI
CERT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38575,368,486 - 75,511,981 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl575,356,345 - 75,512,138 (-)EnsemblGRCh38hg38GRCh38
GRCh37574,664,311 - 74,807,806 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36574,710,821 - 74,843,196 (-)NCBINCBI36Build 36hg18NCBI36
Build 34574,710,820 - 74,843,196NCBI
Celera570,560,104 - 70,701,203 (-)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef569,872,100 - 70,012,981 (-)NCBIHuRef
CHM1_1574,099,650 - 74,240,532 (-)NCBICHM1_1
T2T-CHM13v2.0575,849,379 - 75,993,050 (-)NCBIT2T-CHM13v2.0
Cert1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391396,679,243 - 96,782,362 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1396,679,126 - 96,776,675 (+)EnsemblGRCm39 Ensembl
GRCm381396,542,709 - 96,640,167 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1396,542,618 - 96,640,167 (+)EnsemblGRCm38mm10GRCm38
MGSCv371397,312,690 - 97,410,122 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361397,643,445 - 97,738,249 (+)NCBIMGSCv36mm8
Celera13100,179,310 - 100,279,400 (+)NCBICelera
Cytogenetic Map13D1NCBI
Cert1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542525,233,556 - 25,357,802 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542525,228,216 - 25,355,597 (+)NCBIChiLan1.0ChiLan1.0
CERT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1540,400,615 - 40,539,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl540,400,900 - 40,539,921 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0539,788,858 - 39,927,626 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CERT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1330,860,103 - 30,964,991 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl330,859,569 - 30,962,337 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha332,103,058 - 32,208,205 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0330,790,108 - 30,895,067 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl330,789,601 - 30,894,150 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1330,720,122 - 30,825,163 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0330,690,724 - 30,795,472 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0331,068,667 - 31,173,845 (+)NCBIUU_Cfam_GSD_1.0
Cert1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213189,487,607 - 189,597,296 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365491,261,931 - 1,371,380 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365491,261,913 - 1,368,743 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CERT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl284,413,340 - 84,537,783 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1284,410,425 - 84,538,018 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2286,049,673 - 86,174,690 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CERT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1469,696,926 - 69,843,000 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl469,708,205 - 69,842,338 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604918,481,646 - 18,628,324 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cert1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624951721,411 - 828,150 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624951718,380 - 828,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cert1
261 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:412
Count of miRNA genes:211
Interacting mature miRNAs:282
Transcripts:ENSRNOT00000021549
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat

Markers in Region
D2Rat6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2227,960,387 - 27,960,546 (+)MAPPERmRatBN7.2
Rnor_6.0227,443,096 - 27,443,254NCBIRnor6.0
Rnor_5.0246,555,753 - 46,555,911UniSTSRnor5.0
RGSC_v3.4227,090,370 - 27,090,529RGDRGSC3.4
RGSC_v3.4227,090,371 - 27,090,529UniSTSRGSC3.4
RGSC_v3.1227,010,739 - 27,010,898RGD
Celera224,006,730 - 24,006,888UniSTS
RH 3.4 Map213.3RGD
RH 3.4 Map213.3UniSTS
RH 2.0 Map290.6RGD
SHRSP x BN Map28.2799RGD
Cytogenetic Map2q12UniSTS
D2Rat192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2227,940,259 - 27,940,466 (+)MAPPERmRatBN7.2
Rnor_6.0227,422,969 - 27,423,175NCBIRnor6.0
Rnor_5.0246,535,626 - 46,535,832UniSTSRnor5.0
RGSC_v3.4227,070,028 - 27,070,465RGDRGSC3.4
RGSC_v3.4227,070,241 - 27,070,447UniSTSRGSC3.4
RGSC_v3.1226,990,610 - 26,990,816RGD
Celera223,986,609 - 23,986,815UniSTS
RH 3.4 Map219.8RGD
RH 3.4 Map219.8UniSTS
RH 2.0 Map286.4RGD
SHRSP x BN Map28.2698RGD
Cytogenetic Map2q12UniSTS
BE097464  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2227,924,288 - 27,924,443 (+)MAPPERmRatBN7.2
Rnor_6.0227,406,883 - 27,407,037NCBIRnor6.0
Rnor_5.0246,519,540 - 46,519,694UniSTSRnor5.0
RGSC_v3.4227,054,062 - 27,054,216UniSTSRGSC3.4
Celera223,970,694 - 23,970,848UniSTS
RH 3.4 Map219.8UniSTS
Cytogenetic Map2q12UniSTS
RH130511  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2227,986,845 - 27,987,038 (+)MAPPERmRatBN7.2
Rnor_6.0227,469,551 - 27,469,743NCBIRnor6.0
Rnor_5.0246,582,208 - 46,582,400UniSTSRnor5.0
RGSC_v3.4227,116,829 - 27,117,021UniSTSRGSC3.4
Celera224,033,199 - 24,033,391UniSTS
Cytogenetic Map2q12UniSTS
RH144594  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2227,961,930 - 27,962,095 (+)MAPPERmRatBN7.2
Rnor_6.0227,444,639 - 27,444,803NCBIRnor6.0
Rnor_5.0246,557,296 - 46,557,460UniSTSRnor5.0
RGSC_v3.4227,091,914 - 27,092,078UniSTSRGSC3.4
Celera224,008,273 - 24,008,437UniSTS
RH 3.4 Map219.7UniSTS
Cytogenetic Map2q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 57 41 19 41 8 10 74 35 41 11 8
Low 6 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021549   ⟹   ENSRNOP00000021549
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl227,882,555 - 27,987,074 (+)Ensembl
Rnor_6.0 Ensembl227,365,148 - 27,469,779 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110704   ⟹   ENSRNOP00000080901
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl227,882,555 - 27,987,074 (+)Ensembl
RefSeq Acc Id: NM_001108935   ⟹   NP_001102405
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2227,882,555 - 27,987,074 (+)NCBI
Rnor_6.0227,365,148 - 27,469,779 (+)NCBI
Rnor_5.0246,477,805 - 46,582,454 (+)NCBI
RGSC_v3.4227,012,330 - 27,117,057 (+)RGD
Celera223,928,949 - 24,033,427 (+)RGD
Sequence:
RefSeq Acc Id: XM_006231827   ⟹   XP_006231889
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2227,882,546 - 27,987,090 (+)NCBI
Rnor_6.0227,365,145 - 27,469,797 (+)NCBI
Rnor_5.0246,477,805 - 46,582,454 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001102405 (Get FASTA)   NCBI Sequence Viewer  
  XP_006231889 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM10117 (Get FASTA)   NCBI Sequence Viewer  
  EDM10118 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001102405   ⟸   NM_001108935
- UniProtKB: D4ACN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231889   ⟸   XM_006231827
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZRB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000021549   ⟸   ENSRNOT00000021549
RefSeq Acc Id: ENSRNOP00000080901   ⟸   ENSRNOT00000110704
Protein Domains
PH   START

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACN6-F1-model_v2 AlphaFold D4ACN6 1-624 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691083
Promoter ID:EPDNEW_R1608
Type:multiple initiation site
Name:Col4a3bp_1
Description:collagen type IV alpha 3 binding protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0227,365,158 - 27,365,218EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309131 AgrOrtholog
BioCyc Gene G2FUF-54778 BioCyc
Ensembl Genes ENSRNOG00000015686 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021549 ENTREZGENE
  ENSRNOP00000021549.5 UniProtKB/TrEMBL
  ENSRNOP00000080901 ENTREZGENE
  ENSRNOP00000080901.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021549 ENTREZGENE
  ENSRNOT00000021549.6 UniProtKB/TrEMBL
  ENSRNOT00000110704 ENTREZGENE
  ENSRNOT00000110704.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.30.530.20 UniProtKB/TrEMBL
InterPro PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  STARD11_START UniProtKB/TrEMBL
  START-like_dom UniProtKB/TrEMBL
  START_lipid-bd UniProtKB/TrEMBL
KEGG Report rno:365652 UniProtKB/TrEMBL
NCBI Gene 365652 ENTREZGENE
Pfam PF00169 UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
PhenoGen Cert1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
SMART SM00233 UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
UniProt A0A8I5ZRB1 ENTREZGENE, UniProtKB/TrEMBL
  D4ACN6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-02 Cert1  ceramide transporter 1  Col4a3bp  collagen type IV alpha 3 binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-01-27 Col4a3bp  collagen type IV alpha 3 binding protein  Col4a3bp  collagen, type IV, alpha 3 (Goodpasture antigen) binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-25 Col4a3bp  collagen, type IV, alpha 3 (Goodpasture antigen) binding protein  Col4a3bp_predicted  procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Col4a3bp_predicted  procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein (predicted)      Symbol and Name status set to approved 70820 APPROVED