CERT1 (ceramide transporter 1) - Rat Genome Database

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Gene: CERT1 (ceramide transporter 1) Pan paniscus
Analyze
Symbol: CERT1
Name: ceramide transporter 1
RGD ID: 11826421
Description: ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN cell morphogenesis (ortholog); cell population proliferation (ortholog); ceramide metabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal dominant intellectual developmental disorder 34 (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: COL4A3BP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2439,789,812 - 39,928,826 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1537,943,448 - 38,082,459 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0539,788,858 - 39,927,626 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1540,400,615 - 40,539,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl540,400,900 - 40,539,921 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CERT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2439,789,812 - 39,928,826 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1537,943,448 - 38,082,459 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0539,788,858 - 39,927,626 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1540,400,615 - 40,539,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl540,400,900 - 40,539,921 (+)Ensemblpanpan1.1panPan2
CERT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38575,368,486 - 75,511,981 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl575,356,345 - 75,512,138 (-)EnsemblGRCh38hg38GRCh38
GRCh37574,664,311 - 74,807,806 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36574,710,821 - 74,843,196 (-)NCBINCBI36Build 36hg18NCBI36
Build 34574,710,820 - 74,843,196NCBI
Celera570,560,104 - 70,701,203 (-)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef569,872,100 - 70,012,981 (-)NCBIHuRef
CHM1_1574,099,650 - 74,240,532 (-)NCBICHM1_1
T2T-CHM13v2.0575,849,379 - 75,993,050 (-)NCBIT2T-CHM13v2.0
Cert1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391396,679,243 - 96,782,362 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1396,679,243 - 96,776,675 (+)EnsemblGRCm39 Ensembl
GRCm381396,542,709 - 96,640,167 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1396,542,618 - 96,640,167 (+)EnsemblGRCm38mm10GRCm38
MGSCv371397,312,690 - 97,410,122 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361397,643,445 - 97,738,249 (+)NCBIMGSCv36mm8
Celera13100,179,310 - 100,279,400 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.58NCBI
Cert1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8229,617,202 - 29,721,734 (+)NCBIGRCr8
mRatBN7.2227,882,546 - 27,987,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl227,882,555 - 27,987,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx234,930,260 - 35,034,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0233,030,339 - 33,134,827 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0227,844,444 - 27,949,018 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0227,365,145 - 27,469,797 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl227,365,148 - 27,469,779 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0246,477,805 - 46,582,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4227,012,330 - 27,117,057 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1226,932,579 - 27,035,278 (+)NCBI
Celera223,928,949 - 24,033,427 (+)NCBICelera
Cytogenetic Map2q12NCBI
Cert1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542525,233,556 - 25,357,802 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542525,228,216 - 25,355,597 (+)NCBIChiLan1.0ChiLan1.0
CERT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1330,860,103 - 30,964,991 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl330,859,569 - 30,962,337 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha332,103,058 - 32,208,205 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0330,790,108 - 30,895,067 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl330,789,601 - 30,894,150 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1330,720,122 - 30,825,163 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0330,690,724 - 30,795,472 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0331,068,667 - 31,173,845 (+)NCBIUU_Cfam_GSD_1.0
Cert1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213189,487,607 - 189,597,296 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365491,261,931 - 1,371,380 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365491,261,913 - 1,368,743 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CERT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl284,413,340 - 84,537,783 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1284,410,425 - 84,538,018 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2286,049,673 - 86,174,690 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CERT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1469,696,926 - 69,843,000 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl469,708,205 - 69,842,338 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604918,481,646 - 18,628,324 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cert1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624951721,411 - 828,150 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624951718,380 - 828,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000062746   ⟹   ENSPPAP00000039834
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl540,400,900 - 40,539,921 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000062753   ⟹   ENSPPAP00000039841
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl540,400,975 - 40,539,921 (+)Ensembl
RefSeq Acc Id: XM_008962816   ⟹   XP_008961064
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2439,789,812 - 39,928,826 (+)NCBI
NHGRI_mPanPan1537,944,064 - 38,082,459 (+)NCBI
Mhudiblu_PPA_v0539,788,859 - 39,927,626 (+)NCBI
PanPan1.1540,400,670 - 40,539,921 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034959934   ⟹   XP_034815825
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2439,789,817 - 39,928,826 (+)NCBI
NHGRI_mPanPan1537,943,448 - 38,082,459 (+)NCBI
Mhudiblu_PPA_v0539,788,859 - 39,927,626 (+)NCBI
RefSeq Acc Id: XM_034959935   ⟹   XP_034815826
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2439,789,812 - 39,928,826 (+)NCBI
NHGRI_mPanPan1537,944,064 - 38,082,459 (+)NCBI
Mhudiblu_PPA_v0539,788,858 - 39,927,626 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008961064 (Get FASTA)   NCBI Sequence Viewer  
  XP_034815825 (Get FASTA)   NCBI Sequence Viewer  
  XP_034815826 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000039834.1
  ENSPPAP00000039841
  ENSPPAP00000039841.1
RefSeq Acc Id: XP_008961064   ⟸   XM_008962816
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CD16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034815826   ⟸   XM_034959935
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034815825   ⟸   XM_034959934
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CD85 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000039834   ⟸   ENSPPAT00000062746
Ensembl Acc Id: ENSPPAP00000039841   ⟸   ENSPPAT00000062753
Protein Domains
PH   START


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042589 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062746.1 UniProtKB/TrEMBL
  ENSPPAT00000062753.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.30.530.20 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  STARD11_START UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/TrEMBL
  START_lipid_transfer UniProtKB/TrEMBL
KEGG Report pps:100989192 UniProtKB/TrEMBL
NCBI Gene COL4A3BP ENTREZGENE
PANTHER CERAMIDE TRANSFER PROTEIN UniProtKB/TrEMBL
  PHOSPHATIDYLCHOLINE TRANSFER PROTEIN UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
SMART SM00233 UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
UniProt A0A2R9CD16 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CD85 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-06-18 CERT1  ceramide transporter 1  COL4A3BP  collagen type IV alpha 3 binding protein  Symbol and/or name change 5135510 APPROVED