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Gene: Ccdc39 (coiled-coil domain containing 39) Rattus norvegicus
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Symbol: Ccdc39
Name: coiled-coil domain containing 39
Description: Predicted to be involved in several processes, including cerebrospinal fluid circulation; cilium assembly; and determination of left/right symmetry. Predicted to localize to 9+2 motile cilium; axoneme; and cytosol. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 14. Orthologous to human CCDC39 (coiled-coil domain containing 39); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: coiled-coil domain-containing protein 39; LOC310315; RGD1306277; similar to hypothetical protein D3Ertd789e
Orthologs:
Homo sapiens (human) : CCDC39 (coiled-coil domain containing 39)  HGNC  Alliance
Mus musculus (house mouse) : Ccdc39 (coiled-coil domain containing 39)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ccdc39 (coiled-coil domain containing 39)
Pan paniscus (bonobo/pygmy chimpanzee) : CCDC39 (coiled-coil domain containing 39)
Canis lupus familiaris (dog) : CCDC39 (coiled-coil domain containing 39)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ccdc39 (coiled-coil domain containing 39)
Sus scrofa (pig) : CCDC39 (coiled-coil domain containing 39)
Chlorocebus sabaeus (African green monkey) : CCDC39 (coiled-coil domain containing 39)
Heterocephalus glaber (naked mole-rat) : Ccdc39 (coiled-coil domain containing 39)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02120,278,605 - 120,367,829 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2120,278,605 - 120,316,600 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02139,933,049 - 139,971,476 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42120,117,112 - 120,154,958 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12120,063,147 - 120,160,273 (-)NCBI
Celera2111,715,097 - 111,753,041 (-)NCBICelera
Cytogenetic Map2q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ccdc39
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306277
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.