Prlr (prolactin receptor) - Rat Genome Database

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Gene: Prlr (prolactin receptor) Rattus norvegicus
Analyze
Symbol: Prlr
Name: prolactin receptor
RGD ID: 3407
Description: Exhibits prolactin receptor activity and protein kinase binding activity. Is predicted to contribute to oncostatin-M receptor activity. Predicted to be involved in several processes, including activation of Janus kinase activity; cell surface receptor signaling pathway; and gland development. Predicted to localize to external side of plasma membrane and receptor complex. Human ortholog(s) of this gene implicated in hyperprolactinemia. Orthologous to human PRLR (prolactin receptor); PARTICIPATES IN cytokine mediated signaling pathway; Jak-Stat signaling pathway; INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: lactogen receptor; MGC105486; PRL-R; RATPRLR
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Is Marker For: Strains:   SD   SS.LEW-(Prlr-D2Rat143)/Ayd  
QTLs:   Bp99   Smcn1   Bp270  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2259,134,147 - 59,324,719 (+)NCBI
Rnor_6.0 Ensembl260,131,776 - 60,325,692 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0260,131,410 - 60,325,686 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0284,360,850 - 84,554,681 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4259,507,966 - 59,701,221 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1259,485,049 - 59,629,454 (+)NCBI
Celera259,347,111 - 59,534,658 (-)NCBICelera
Cytogenetic Map2q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (EXP)
2-methoxyethanol  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,7-dihydropurine-6-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
Azaspiracid  (ISO)
benzene  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bexarotene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylparaben  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
capsaicin  (EXP)
carbon nanotube  (ISO)
chloroquine  (EXP)
chromium(6+)  (EXP,ISO)
clofibric acid  (EXP)
clothianidin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
curcumin  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cyproconazole  (ISO)
cyproterone acetate  (EXP)
dexamethasone  (EXP)
dextran sulfate  (ISO)
diazinon  (EXP)
dibutyl phthalate  (EXP)
diethylstilbestrol  (EXP)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
ethylenediaminetetraacetic acid  (ISO)
flavonoids  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fumonisin B1  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glycidol  (EXP)
glyphosate  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (EXP)
irinotecan  (EXP)
latrunculin A  (ISO)
lead diacetate  (EXP)
leflunomide  (EXP)
magnesium atom  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
mercaptopurine  (EXP)
metacetamol  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury(1+)  (EXP)
methylparaben  (ISO)
methylphenidate  (ISO)
metoclopramide  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (EXP)
naproxen  (EXP)
nickel atom  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (EXP)
orphenadrine  (EXP)
oxycodone  (EXP)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (EXP)
prednisolone  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
progesterone  (EXP,ISO)
propiconazole  (ISO)
prostaglandin F2alpha  (EXP)
purine-6-thiol  (EXP)
silicon dioxide  (ISO)
sirolimus  (EXP)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sulpiride  (EXP)
sumatriptan  (EXP)
tacrolimus hydrate  (EXP)
tamoxifen  (EXP,ISO)
testosterone  (EXP,ISO)
testosterone enanthate  (EXP)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
theophylline  (ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zinc atom  (EXP,ISO)
zinc(0)  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:2159291   PMID:2293022   PMID:2832068   PMID:6303755   PMID:7929319   PMID:7984244   PMID:9632658   PMID:10585417   PMID:11445538   PMID:11706048   PMID:11735251   PMID:11862718  
PMID:12040017   PMID:12477932   PMID:12673052   PMID:12782310   PMID:12810576   PMID:12865306   PMID:12914538   PMID:15845620   PMID:16107292   PMID:16280030   PMID:16469767   PMID:16489923  
PMID:17317019   PMID:17322574   PMID:17433256   PMID:17620100   PMID:17785459   PMID:18092198   PMID:18313837   PMID:18372733   PMID:18665386   PMID:18679052   PMID:18765257   PMID:19103603  
PMID:20462969   PMID:21177834   PMID:21508351   PMID:22977841   PMID:23012479   PMID:24114406   PMID:25446202   PMID:26874070   PMID:30500398  


Genomics

Comparative Map Data
Prlr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2259,134,147 - 59,324,719 (+)NCBI
Rnor_6.0 Ensembl260,131,776 - 60,325,692 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0260,131,410 - 60,325,686 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0284,360,850 - 84,554,681 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4259,507,966 - 59,701,221 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1259,485,049 - 59,629,454 (+)NCBI
Celera259,347,111 - 59,534,658 (-)NCBICelera
Cytogenetic Map2q16NCBI
PRLR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl535,048,756 - 35,230,487 (-)EnsemblGRCh38hg38GRCh38
GRCh38535,048,756 - 35,230,724 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37535,048,861 - 35,230,589 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36535,099,985 - 35,266,334 (-)NCBINCBI36hg18NCBI36
Build 34535,099,984 - 35,266,334NCBI
Celera534,937,982 - 35,112,885 (-)NCBI
Cytogenetic Map5p13.2NCBI
HuRef534,997,595 - 35,179,481 (-)NCBIHuRef
CHM1_1535,051,181 - 35,232,962 (-)NCBICHM1_1
Prlr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391510,177,324 - 10,349,276 (+)NCBIGRCm39mm39
GRCm39 Ensembl1510,177,324 - 10,349,266 (+)Ensembl
GRCm381510,177,238 - 10,349,190 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1510,177,238 - 10,349,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371510,106,993 - 10,266,775 (+)NCBIGRCm37mm9NCBIm37
MGSCv361510,122,380 - 10,274,111 (+)NCBImm8
Celera159,973,912 - 10,134,326 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.23NCBI
Prlr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542620,168,830 - 20,326,840 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542620,161,406 - 20,326,688 (-)NCBIChiLan1.0ChiLan1.0
PRLR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1580,420,061 - 80,585,559 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl580,532,058 - 80,600,403 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0575,139,852 - 75,321,695 (+)NCBIMhudiblu_PPA_v0panPan3
PRLR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,147,919 - 73,280,970 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,110,858 - 73,273,916 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha472,720,596 - 72,897,403 (+)NCBI
ROS_Cfam_1.0473,614,203 - 73,786,894 (+)NCBI
UMICH_Zoey_3.1473,362,835 - 73,534,628 (+)NCBI
UNSW_CanFamBas_1.0473,486,988 - 73,657,508 (+)NCBI
UU_Cfam_GSD_1.0474,020,052 - 74,186,420 (+)NCBI
Prlr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213224,874,923 - 225,019,820 (-)NCBI
SpeTri2.0NW_0049365186,352,133 - 6,495,242 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRLR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,618,875 - 20,810,140 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,637,568 - 20,655,881 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,520,678 - 21,569,349 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRLR
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,933,601 - 34,108,653 (-)NCBI
ChlSab1.1 Ensembl433,949,935 - 34,108,619 (-)Ensembl
Prlr
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475919,653,626 - 19,836,877 (+)NCBI

Position Markers
D2Wox14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2259,324,454 - 59,324,636 (+)MAPPER
Rnor_6.0260,325,429 - 60,325,610NCBIRnor6.0
Rnor_5.0284,360,926 - 84,361,107UniSTSRnor5.0
RGSC_v3.4259,700,964 - 59,701,145UniSTSRGSC3.4
RGSC_v3.4259,700,963 - 59,701,145RGDRGSC3.4
Celera259,347,187 - 59,347,368UniSTS
Cytogenetic Map2q16UniSTS
D2Mit24  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2259,324,377 - 59,324,691 (+)MAPPER
Rnor_6.0260,325,352 - 60,325,665NCBIRnor6.0
Rnor_5.0284,360,871 - 84,361,184UniSTSRnor5.0
RGSC_v3.4259,700,886 - 59,701,200RGDRGSC3.4
RGSC_v3.4259,700,887 - 59,701,200UniSTSRGSC3.4
RGSC_v3.1259,629,119 - 59,629,433RGD
Celera259,347,132 - 59,347,445UniSTS
RH 3.4 Map2408.7UniSTS
RH 3.4 Map2408.7RGD
Cytogenetic Map2q16UniSTS
D2Arb6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2259,324,307 - 59,324,662 (+)MAPPER
Rnor_6.0260,325,282 - 60,325,636NCBIRnor6.0
Rnor_5.0284,360,900 - 84,361,254UniSTSRnor5.0
RGSC_v3.4259,700,816 - 59,701,171RGDRGSC3.4
RGSC_v3.4259,700,817 - 59,701,171UniSTSRGSC3.4
RGSC_v3.1259,629,049 - 59,629,404RGD
Celera259,347,161 - 59,347,515UniSTS
SHRSP x BN Map227.5198UniSTS
SHRSP x BN Map227.5198RGD
Cytogenetic Map2q16UniSTS
D12Uia2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2259,172,704 - 59,172,974 (+)MAPPER
Rnor_6.0260,170,165 - 60,170,434NCBIRnor6.0
Rnor_5.0284,516,208 - 84,516,477UniSTSRnor5.0
RGSC_v3.4259,547,040 - 59,547,307RGDRGSC3.4
RGSC_v3.4259,547,038 - 59,547,307UniSTSRGSC3.4
RGSC_v3.1259,475,273 - 59,475,540RGD
Celera259,496,188 - 59,496,561UniSTS
Cytogenetic Map2q16UniSTS
D2Chm280  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2259,179,853 - 59,180,074 (+)MAPPER
Rnor_6.0260,177,314 - 60,177,534NCBIRnor6.0
Rnor_5.0284,509,108 - 84,509,328UniSTSRnor5.0
RGSC_v3.4259,554,187 - 59,554,407UniSTSRGSC3.4
Celera259,489,085 - 59,489,305UniSTS
Cytogenetic Map2q16UniSTS
Prlr  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2259,290,897 - 59,291,032 (+)MAPPER
Rnor_6.0260,285,969 - 60,286,103NCBIRnor6.0
Rnor_5.0284,400,544 - 84,400,678UniSTSRnor5.0
RGSC_v3.4259,666,361 - 59,666,495UniSTSRGSC3.4
Celera259,378,767 - 59,378,901UniSTS
Cytogenetic Map2q16UniSTS
Prlr  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2259,306,261 - 59,306,381 (+)MAPPER
Rnor_6.0260,307,857 - 60,307,976NCBIRnor6.0
Rnor_6.0260,298,031 - 60,298,150NCBIRnor6.0
Rnor_5.0284,378,241 - 84,378,360UniSTSRnor5.0
Rnor_5.0284,388,496 - 84,388,615UniSTSRnor5.0
RGSC_v3.4259,681,382 - 59,681,501UniSTSRGSC3.4
Celera259,365,410 - 59,365,529UniSTS
Cytogenetic Map2q16UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)23127638105149020Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)2944467968866454Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)216679272245624402Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21901646564016465Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22027698165276981Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22064137165641371Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22261295267612952Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22328064775687607Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)223837491149614623Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491169852800Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491169852800Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491218957222Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491218957222Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)223837719169852670Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)223837719169852670Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22618609783819822Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22618609783819822Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22618609783819822Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226186097135654963Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226186097142053534Rat
12879841Cm87Cardiac mass QTL 870.026heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)227161361148295267Rat
12879842Cm88Cardiac mass QTL 880.042heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)227161361148295267Rat
12879843Am3Aortic mass QTL 30.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)227161361148295267Rat
12879844Kidm62Kidney mass QTL 620.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227161361148295267Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22776030172760301Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23127237976272379Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23408817591101903Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23513320280133202Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)236245223112175725Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240171834105089682Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240171834105089682Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240171834105089682Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240171834105089682Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240171834105089682Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24277691662238534Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242776916169852800Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242776916195645082Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242776916217498710Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242776916217498710Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243133606217498545Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243133606217498545Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243141290114164944Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)243141290114164944Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243141290154583160Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight as a percentage of body weight (CMO:0000654)24314978885642672Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243149788198704485Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246537589217498710Rat
1354592Rf50Renal function QTL 503.5urine output (VT:0003620)timed urine volume (CMO:0000260)25443669875687607Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256244671217498710Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)25673640160325686Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)25771560378466260Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25834410075687607Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)260131410135646395Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)260325352106432915Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)260325352106432915Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)260325352147522851Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)260325686105059293Rat


Related Rat Strains
The following Strains have been annotated to Prlr

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:350
Count of miRNA genes:208
Interacting mature miRNAs:252
Transcripts:ENSRNOT00000023941, ENSRNOT00000023960, ENSRNOT00000059970, ENSRNOT00000059973
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 25 17 17 23 5
Low 3 3 15 8 16 8 8 8 40 12 30 9 8
Below cutoff 12 9 8 3 8 1 30 4 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001034111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB071022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L48060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M19304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M34083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M57668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M74152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U07567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U34730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z83758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000080786   ⟹   ENSRNOP00000072948
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl260,131,776 - 60,308,152 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080974   ⟹   ENSRNOP00000074428
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl260,169,517 - 60,325,692 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084624   ⟹   ENSRNOP00000073622
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl260,180,215 - 60,325,671 (+)Ensembl
RefSeq Acc Id: NM_001034111   ⟹   NP_001029283
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,134,588 - 59,306,557 (+)NCBI
Rnor_6.0260,131,776 - 60,308,152 (+)NCBI
Rnor_5.0284,360,850 - 84,554,681 (-)NCBI
RGSC_v3.4259,507,966 - 59,701,221 (+)RGD
Celera259,365,234 - 59,534,658 (-)NCBI
Sequence:
RefSeq Acc Id: NM_012630   ⟹   NP_036762
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,182,484 - 59,324,712 (+)NCBI
Rnor_6.0260,180,215 - 60,325,686 (+)NCBI
Rnor_5.0284,360,850 - 84,554,681 (-)NCBI
RGSC_v3.4259,507,966 - 59,701,221 (+)RGD
Celera259,347,111 - 59,486,679 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590635   ⟹   XP_017446124
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0260,131,410 - 60,308,176 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039101745   ⟹   XP_038957673
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,270,506 - 59,316,685 (+)NCBI
RefSeq Acc Id: XM_039101746   ⟹   XP_038957674
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,134,147 - 59,316,685 (+)NCBI
RefSeq Acc Id: XM_039101747   ⟹   XP_038957675
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,166,190 - 59,316,685 (+)NCBI
RefSeq Acc Id: XM_039101748   ⟹   XP_038957676
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,213,756 - 59,316,685 (+)NCBI
RefSeq Acc Id: XM_039101749   ⟹   XP_038957677
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,166,190 - 59,316,685 (+)NCBI
RefSeq Acc Id: XM_039101750   ⟹   XP_038957678
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,213,756 - 59,316,685 (+)NCBI
RefSeq Acc Id: XM_039101751   ⟹   XP_038957679
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,270,511 - 59,324,367 (+)NCBI
RefSeq Acc Id: XM_039101752   ⟹   XP_038957680
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,168,868 - 59,324,719 (+)NCBI
RefSeq Acc Id: XM_039101753   ⟹   XP_038957681
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,134,150 - 59,324,367 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001029283 (Get FASTA)   NCBI Sequence Viewer  
  NP_036762 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957673 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957674 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957675 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957676 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957677 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957678 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957679 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957680 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957681 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41937 (Get FASTA)   NCBI Sequence Viewer  
  AAA41938 (Get FASTA)   NCBI Sequence Viewer  
  AAA41946 (Get FASTA)   NCBI Sequence Viewer  
  AAA61784 (Get FASTA)   NCBI Sequence Viewer  
  AAA79273 (Get FASTA)   NCBI Sequence Viewer  
  AAA79274 (Get FASTA)   NCBI Sequence Viewer  
  AAA92053 (Get FASTA)   NCBI Sequence Viewer  
  AAH92133 (Get FASTA)   NCBI Sequence Viewer  
  CAB06043 (Get FASTA)   NCBI Sequence Viewer  
  EDL82998 (Get FASTA)   NCBI Sequence Viewer  
  EDL82999 (Get FASTA)   NCBI Sequence Viewer  
  EDL83000 (Get FASTA)   NCBI Sequence Viewer  
  EDL83001 (Get FASTA)   NCBI Sequence Viewer  
  EDL83002 (Get FASTA)   NCBI Sequence Viewer  
  EDL83003 (Get FASTA)   NCBI Sequence Viewer  
  EDL83004 (Get FASTA)   NCBI Sequence Viewer  
  EDL83005 (Get FASTA)   NCBI Sequence Viewer  
  EDL83006 (Get FASTA)   NCBI Sequence Viewer  
  EDL83007 (Get FASTA)   NCBI Sequence Viewer  
  EDL83008 (Get FASTA)   NCBI Sequence Viewer  
  P05710 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_036762   ⟸   NM_012630
- Peptide Label: isoform b precursor
- UniProtKB: P05710 (UniProtKB/Swiss-Prot),   Q58DZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029283   ⟸   NM_001034111
- Peptide Label: isoform a precursor
- UniProtKB: P05710 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017446124   ⟸   XM_017590635
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000072948   ⟸   ENSRNOT00000080786
RefSeq Acc Id: ENSRNOP00000073622   ⟸   ENSRNOT00000084624
RefSeq Acc Id: ENSRNOP00000074428   ⟸   ENSRNOT00000080974
RefSeq Acc Id: XP_038957674   ⟸   XM_039101746
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957681   ⟸   XM_039101753
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038957675   ⟸   XM_039101747
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957677   ⟸   XM_039101749
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957680   ⟸   XM_039101752
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038957676   ⟸   XM_039101748
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957678   ⟸   XM_039101750
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957673   ⟸   XM_039101745
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957679   ⟸   XM_039101751
- Peptide Label: isoform X2
Protein Domains
EpoR_lig-bind   Fibronectin type-III

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691181
Promoter ID:EPDNEW_R1706
Type:initiation region
Name:Prlr_1
Description:prolactin receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0260,180,256 - 60,180,316EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3407 AgrOrtholog
Ensembl Genes ENSRNOG00000057557 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000072948 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000073622 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000074428 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080786 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000080974 UniProtKB/TrEMBL
  ENSRNOT00000084624 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7310645 IMAGE-MGC_LOAD
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Growth/epo_recpt_lig-bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Long_hematopoietin_rcpt_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRLR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24684 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105486 IMAGE-MGC_LOAD
NCBI Gene 24684 ENTREZGENE
PANTHER PTHR23036:SF86 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EpoR_lig-bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Prlr PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HEMATOPO_REC_L_F1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K488_RAT UniProtKB/TrEMBL
  A0A0G2K813_RAT UniProtKB/TrEMBL
  P05710 ENTREZGENE, UniProtKB/Swiss-Prot
  Q58DZ7 ENTREZGENE, UniProtKB/TrEMBL
  Q7M037_RAT UniProtKB/TrEMBL
UniProt Secondary Q62832 UniProtKB/Swiss-Prot
  Q63451 UniProtKB/Swiss-Prot
  Q63479 UniProtKB/Swiss-Prot
  Q63723 UniProtKB/Swiss-Prot
  Q64274 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Prlr  prolactin receptor      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expression levels increased during pregnancy and lactating periods 625741
gene_expression expressed in the brain, liver and mammary gland 625741
gene_expression expressed in the uterine stromal cell line (UIII) 625741
gene_product member of type-1 cytokine receptor superfamily 625741
gene_regulation expression in brain is controlled by the promoter for the E1(4) first exon 625741
gene_regulation expression changed during estrous cycle; may be regulated by PRL or steroid hormones 729535
gene_transcript unlike variants using exons E1(1), E1(2) and E1(3), transcripts which utilize E1(4) lack the usual second exon and are instead spliced to join E1(4) with the third exon 625741
gene_transcript putative transcription factor-binding sites such as CCAAT, Sp1, and glucocorticoid-responsive elements were observed in the upstream regions 625741
gene_transcript the E1(4) first exon consists of two variants, a longer cDNA containing a 243 bp sequence and a shorter variant lacking 139 bp at the 5' end 625741