Atp5f1b-ps2 (ATP synthase F1 subunit beta, pseudogene 2) - Rat Genome Database

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Gene: Atp5f1b-ps2 (ATP synthase F1 subunit beta, pseudogene 2) Rattus norvegicus
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Symbol: Atp5f1b-ps2
Name: ATP synthase F1 subunit beta, pseudogene 2
RGD ID: 1594508
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC365654; similar to ATP synthase beta chain, mitochondrial precursor
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8230,870,113 - 30,872,138 (+)NCBIGRCr8
mRatBN7.2229,135,677 - 29,137,702 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0225,599,361 - 25,601,401 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0244,753,661 - 44,755,675 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4228,334,252 - 28,336,976 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera225,172,793 - 25,174,833 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat

Markers in Region
ATP5B  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27516,480 - 516,617 (+)MAPPERmRatBN7.2
mRatBN7.2229,136,039 - 29,136,176 (+)MAPPERmRatBN7.2
Rnor_6.0225,599,724 - 25,599,860NCBIRnor6.0
Rnor_6.072,505,735 - 2,505,871NCBIRnor6.0
Rnor_5.072,485,122 - 2,485,258UniSTSRnor5.0
Rnor_5.0244,754,009 - 44,754,145UniSTSRnor5.0
RGSC_v3.4228,334,600 - 28,334,736UniSTSRGSC3.4
RGSC_v3.471,377,579 - 1,377,715UniSTSRGSC3.4
Celera7395,675 - 395,811UniSTS
Celera225,173,156 - 25,173,292UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map7q11UniSTS
RH127966  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27520,984 - 521,753 (+)MAPPERmRatBN7.2
mRatBN7.2229,137,525 - 29,137,741 (+)MAPPERmRatBN7.2
Rnor_6.0225,601,210 - 25,601,425NCBIRnor6.0
Rnor_6.072,510,875 - 2,511,643NCBIRnor6.0
Rnor_5.072,489,465 - 2,490,233UniSTSRnor5.0
Rnor_5.0244,755,495 - 44,755,710UniSTSRnor5.0
RGSC_v3.4228,336,799 - 28,337,015UniSTSRGSC3.4
RGSC_v3.471,382,355 - 1,383,123UniSTSRGSC3.4
Celera7400,252 - 401,020UniSTS
Celera225,174,642 - 25,174,857UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_006223989   ⟹   XP_006224051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera225,172,808 - 25,174,822 (+)NCBI
RefSeq Acc Id: XM_006231819   ⟹   XP_006231881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0244,753,661 - 44,755,675 (+)NCBI
RefSeq Acc Id: XR_145814
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0244,753,661 - 44,755,675 (+)NCBI
RefSeq Acc Id: XR_146816
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera225,172,808 - 25,174,822 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54737 BioCyc
NCBI Gene 365654 ENTREZGENE
PhenoGen Atp5f1b-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Atp5f1b-ps2  ATP synthase F1 subunit beta, pseudogene 2  LOC365654  similar to ATP synthase beta chain, mitochondrial precursor  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC365654  similar to ATP synthase beta chain, mitochondrial precursor      Symbol and Name status set to provisional 70820 PROVISIONAL