LOC102549347 (uncharacterized LOC102549347) - Rat Genome Database

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Gene: LOC102549347 (uncharacterized LOC102549347) Rattus norvegicus
Analyze
Symbol: LOC102549347
Name: uncharacterized LOC102549347
RGD ID: 7567902
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8241,227,416 - 41,261,624 (-)NCBIGRCr8
mRatBN7.2239,500,063 - 39,528,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl239,508,461 - 39,526,936 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0239,281,933 - 39,314,656 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0258,378,863 - 58,399,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map2q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23675034481750344Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)23561408353462005Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23686864381868643Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)23326999678269996Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001836575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_590882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_590884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_590885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000095045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl239,509,630 - 39,511,629 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl239,511,329 - 39,511,979 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl239,508,461 - 39,526,936 (-)Ensembl
RefSeq Acc Id: XR_005500622
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,624 (-)NCBI
mRatBN7.2239,500,063 - 39,528,170 (-)NCBI
RefSeq Acc Id: XR_005500624
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,624 (-)NCBI
mRatBN7.2239,507,551 - 39,528,170 (-)NCBI
RefSeq Acc Id: XR_005500625
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,624 (-)NCBI
mRatBN7.2239,507,551 - 39,528,170 (-)NCBI
RefSeq Acc Id: XR_005500626
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,624 (-)NCBI
mRatBN7.2239,507,551 - 39,528,170 (-)NCBI
RefSeq Acc Id: XR_005500628
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,623 (-)NCBI
mRatBN7.2239,511,747 - 39,528,169 (-)NCBI
RefSeq Acc Id: XR_005500630
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,624 (-)NCBI
mRatBN7.2239,507,551 - 39,528,170 (-)NCBI
RefSeq Acc Id: XR_005500632
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,624 (-)NCBI
mRatBN7.2239,507,551 - 39,528,170 (-)NCBI
RefSeq Acc Id: XR_010064069
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,624 (-)NCBI
RefSeq Acc Id: XR_010064070
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,624 (-)NCBI
RefSeq Acc Id: XR_010064071
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,624 (-)NCBI
RefSeq Acc Id: XR_010064072
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,624 (-)NCBI
RefSeq Acc Id: XR_010064073
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,227,416 - 41,261,623 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54471 BioCyc
Ensembl Genes ENSRNOG00000069775 Ensembl
NCBI Gene LOC102549347 ENTREZGENE
PhenoGen LOC102549347 PhenoGen
RatGTEx ENSRNOG00000069775 RatGTEx
RNAcentral URS0000CCE295 RNACentral
  URS0000CCE7EA RNACentral
  URS0000CCF6D6 RNACentral
  URS0000CCFDD7 RNACentral
  URS0000CD0140 RNACentral
  URS0000CD01AC RNACentral
  URS0000CD0A98 RNACentral
  URS00022B1857 RNACentral
  URS00022B5799 RNACentral
  URS00022B5BF5 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102549347  uncharacterized LOC102549347      Symbol and Name status set to provisional 70820 PROVISIONAL