Elf2 (E74 like ETS transcription factor 2)

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Gene: Elf2 (E74 like ETS transcription factor 2) Rattus norvegicus

Analyze

Symbol:

Elf2

Name:

E74 like ETS transcription factor 2

RGD ID:

1310585

Description:

Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription, DNA-templated. Predicted to localize to cytosol and nuclear body. Orthologous to human ELF2 (E74 like ETS transcription factor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

E74-like factor 2; ETS-related transcription factor Elf-2; LOC361944

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ELF2 (E74 like ETS transcription factor 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Elf2 (E74-like factor 2)	HGNC	Treefam, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Elf2 (E74 like ETS transcription factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ELF2 (E74 like ETS transcription factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ELF2 (E74 like ETS transcription factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Elf2 (E74 like ETS transcription factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ELF2 (E74 like ETS transcription factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ELF2 (E74 like ETS transcription factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Elf2 (E74 like ETS transcription factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ELF2 (E74 like ETS transcription factor 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Elf2 (E74-like factor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	elf2a (E74-like factor 2a (ets domain transcription factor))	Alliance	DIOPT (OrthoFinder\|PANTHER\|TreeFam)
Danio rerio (zebrafish):	elf2b (E74-like factor 2b (ets domain transcription factor))	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Eip74EF	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Caenorhabditis elegans (roundworm):	elf-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	135,292,291 - 135,385,942 (-)	NCBI
Rnor_6.0 Ensembl	2	140,310,375 - 140,387,505 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	140,310,374 - 140,399,312 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	159,783,379 - 159,874,677 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	140,144,023 - 140,221,693 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	140,094,451 - 140,118,284 (-)	NCBI
Celera	2	129,790,803 - 129,867,968 (-)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cerebellar Ataxia, Neuropathy, and Vestibular Areflexia Syndrome (ISO)

juvenile rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (EXP,ISO)

4-vinylcyclohexene dioxide (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

calcitriol (ISO)

carbamazepine (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

curcumin (ISO)

D-mannitol (ISO)

decabromodiphenyl ether (EXP)

diclofenac (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

lead diacetate (ISO)

ozone (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

trichloroethene (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IBA)

negative regulation of transcription, DNA-templated (ISO)

positive regulation of transcription, DNA-templated (ISO)

regulation of transcription by RNA polymerase II (IBA,ISO)

Cellular Component

cytosol (IEA,ISO)

nuclear body (IEA,ISO)

nucleoplasm (ISO)

nucleus (IBA)

Molecular Function

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,ISO)

protein binding (ISO)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8756667	PMID:12477932	PMID:14970218	PMID:17593952	PMID:22917528

Genomics

Comparative Map Data

Elf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	135,292,291 - 135,385,942 (-)	NCBI
Rnor_6.0 Ensembl	2	140,310,375 - 140,387,505 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	140,310,374 - 140,399,312 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	159,783,379 - 159,874,677 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	140,144,023 - 140,221,693 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	140,094,451 - 140,118,284 (-)	NCBI
Celera	2	129,790,803 - 129,867,968 (-)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

ELF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	139,028,112 - 139,177,218 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	139,057,220 - 139,177,218 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	139,978,374 - 140,098,372 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	4	139,978,871 - 140,098,372 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	140,198,321 - 140,280,056 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	4	137,311,010 - 137,392,749 (-)	NCBI
Cytogenetic Map	4	q31.1	NCBI
HuRef	4	135,708,471 - 135,790,221 (-)	NCBI		HuRef
CHM1_1	4	139,956,156 - 140,037,895 (-)	NCBI		CHM1_1

Elf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	51,160,141 - 51,248,101 (-)	NCBI	GRCm39		mm39
GRCm38	3	51,252,720 - 51,340,683 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	51,252,720 - 51,340,663 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	51,059,587 - 51,129,909 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	51,343,594 - 51,413,916 (-)	NCBI			mm8
Celera	3	50,982,584 - 51,052,955 (-)	NCBI		Celera
Cytogenetic Map	3	C	NCBI

Elf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	4,479,913 - 4,550,783 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955428	4,458,962 - 4,550,783 (+)	NCBI	ChiLan1.0	ChiLan1.0

ELF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	142,731,593 - 142,849,724 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	142,731,593 - 142,850,778 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	131,420,985 - 131,540,691 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ELF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	19	3,483,542 - 3,578,870 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	19	3,482,845 - 3,580,380 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Elf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936535	8,426,550 - 8,496,129 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	87,774,594 - 87,878,848 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	87,774,594 - 87,878,847 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	93,470,166 - 93,472,862 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELF2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	86,030,222 - 86,147,150 (-)	NCBI
ChlSab1.1 Ensembl	7	86,029,653 - 86,147,309 (-)	Ensembl

Elf2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624777	19,393,003 - 19,493,038 (-)	NCBI

Position Markers

AA899415

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	140,310,556 - 140,310,654	NCBI	Rnor6.0
Rnor_5.0	2	159,783,561 - 159,783,659	UniSTS	Rnor5.0
RGSC_v3.4	2	140,144,205 - 140,144,303	UniSTS	RGSC3.4
Celera	2	129,790,985 - 129,791,083	UniSTS
RH 3.4 Map	2	848.7	UniSTS
Cytogenetic Map	2	q26	UniSTS

AI713059

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	140,322,489 - 140,322,586	NCBI	Rnor6.0
Rnor_5.0	2	159,795,462 - 159,795,559	UniSTS	Rnor5.0
RGSC_v3.4	2	140,156,546 - 140,156,643	UniSTS	RGSC3.4
Celera	2	129,802,937 - 129,803,034	UniSTS
RH 3.4 Map	2	847.7	UniSTS
Cytogenetic Map	2	q26	UniSTS

RH139034

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	140,334,531 - 140,334,678	NCBI	Rnor6.0
Rnor_5.0	2	159,807,504 - 159,807,651	UniSTS	Rnor5.0
RGSC_v3.4	2	140,168,588 - 140,168,735	UniSTS	RGSC3.4
Celera	2	129,815,123 - 129,815,270	UniSTS
Cytogenetic Map	2	q26	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	16679272	245624402	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	23837491	149614623	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	169852800	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	169852800	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	218957222	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	218957222	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	23837719	169852670	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	23837719	169852670	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26186097	142053534	Rat
12879841	Cm87	Cardiac mass QTL 87		0.026	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	27161361	148295267	Rat
12879842	Cm88	Cardiac mass QTL 88		0.042	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	27161361	148295267	Rat
12879843	Am3	Aortic mass QTL 3		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	27161361	148295267	Rat
12879844	Kidm62	Kidney mass QTL 62		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27161361	148295267	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42776916	169852800	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42776916	195645082	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42776916	217498710	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42776916	217498710	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43133606	217498545	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43133606	217498545	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43141290	154583160	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43149788	198704485	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46537589	217498710	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56244671	217498710	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	60325352	147522851	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66828049	217498710	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66828236	243550655	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	68865414	169852800	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	68866454	149614466	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	75687495	221880419	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78321410	158159410	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78321410	217498710	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	80631950	149614623	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83754907	237610852	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83819608	239166203	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83819608	243901375	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	93995316	169852800	Rat
1598862	Glom9	Glomerulus QTL 9	3.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	2	95946719	140946719	Rat
1598863	Cm65	Cardiac mass QTL 65	2.3		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	95946719	140946719	Rat
2317886	Alcrsp23	Alcohol response QTL 23	2.4	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	96844330	141844330	Rat
9589093	Slep10	Serum leptin concentration QTL 10	3.84	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	2	102356980	147356980	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	108880910	153880910	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	110965721	155965721	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	115721880	154182196	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	116075644	228737869	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	116075644	228737869	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	118446646	149614623	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	118446646	149614623	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	118446646	200453484	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	118446646	200453484	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	118446646	227707979	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	118446793	228582621	Rat
1354594	Despr10	Despair related QTL 10		0.00000249	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	119789823	164789823	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	121750419	155965721	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	121750419	169852800	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	123456539	168456539	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	133399373	173020198	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	138901276	217498710	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	625
Count of miRNA genes:	255
Interacting mature miRNAs:	326
Transcripts:	ENSRNOT00000015067, ENSRNOT00000047635
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	35	43	27	19	27	6	9	72	29	41	11	6
Low		8	14	14		14	2	2	2	6			2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001033909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000015067 ⟹ ENSRNOP00000015067

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	140,310,375 - 140,334,912 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000047635 ⟹ ENSRNOP00000047984

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	140,310,375 - 140,387,505 (-)	Ensembl

RefSeq Acc Id:

NM_001012181 ⟹ NP_001012181

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	135,294,905 - 135,319,473 (-)	NCBI
Rnor_6.0	2	140,310,374 - 140,334,912 (-)	NCBI
Rnor_5.0	2	159,783,379 - 159,874,677 (-)	NCBI
RGSC_v3.4	2	140,144,023 - 140,221,693 (-)	RGD
Celera	2	129,790,803 - 129,815,504 (-)	NCBI

Sequence:

show sequence

GCACAGGAATTTCATGGCCAGCAAACCGAGCGACTCTAATCCAGTCTCCCCGAGGCTGCCCGGC
GGCTCTTTTCTGTTTACTAATTACCTGTCTAGTGTACTCTGACTTCTGTAGAGAAGGCAGGACC
AAGTCGTTTTTGAAGTAGTTGGAGACTCCTGACTTCCCTAGTGATGTTTCTAGAATATTTTCTA
GGTACAAGTTTTTTAAAGTGCAGTTCCTTCAACGGAACTGATTGTATGTTGCATAAGCGCTGGG
AAGGCCAAAACAAGTTAAAAAGCCACCTTTATGTACAGCTGCGGGACTAGGAATTAGGTCTTTT
CTAGGAAGAAAAATTTGATTCATGGCTCTTTTCCAGAGGGGACATTTGCAGACTTCGCTTCCGC
AGAACGTGAAGCGCGCCTCTTCCTGCCGAGGCCCGCGTCCCCGAGGGCGGCCTGCGGCTCCCCA
GCCTCAGGTGTCCGTGCGGCCGCTGGCTGCCGGCGCCCGGGACTTCCTGTCTGGGCGCGGGGCG
GAAGGATCGCGTTGCCAGCCGGGGCCGCCGCCGCCCCTGCCGTTAGGTGGTGGGGCTGCTCAGC
CCGGCGGCGGGAGGCGGGCCGGCCGCCGCTTCCTGTCGGAGGACGCGCAAGGATCCGGGCGTCG
GAGTGTGTGCGAGTGCGTGAGTGTGTGCCGCCCGCACGGCGTGTGTCTCCGGCCGCGGGTTCCG
CCTTCTCCCCTGTCGCCGCTGCTCAGGGTGTAAGTCAATGTGAAGCAGCAGTTCCAGCCCCGGG
ATAAACATGGCGACGTCTCTGCATGAGGGACCCACGAACCAGCTGGATCTGCTCATCCGGGCCG
TGGAAGCATCAGTTCACAGCAGTAATGCACACTGTACGGATAAGACCATTGAAGCTGCTGAAGC
CCTGCTTCATATGGAGTCTCCTACCTGCTTGAGGGATTCAAGAAGTCCCGAGTTTATCCATGCT
GCGATGAGGCCAGATGTCATTACGGAGACTGTAGTGGAGGTGTCAACAGAGGAGTCTGAACCAA
TGGATGCCTCGCCTATCCCTACTTCACCAGACAGCCACGAACCAATGAAAAAGAAGAAAGTTGG
CCGTAAACCAAAGACCCAGCAGTCACCAGTTTCCAATGGGTCTCCTGAGTTAGGAGTCAAGAAG
AAAGCCAGAGAAGGAAAAGGAAACACAACCTATCTGTGGGAGTTTCTTTTAGATCTGCTTCAAG
ATAAAAATACTTGTCCCAGGTATATTAAATGGACTCAGAGAGAAAAGGGCATATTCAAGCTGGT
GGACTCAAAGGCTGTCTCGAAGCTCTGGGGAAAGCATAAGAACAAACCAGACATGAACTATGAA
ACTATGGGGCGAGCTCTGAGATACTACTACCAAAGGGGAATTCTTGCAAAGGTTGAAGGACAGA
GGCTCGTATATCAGTTCAAGGACATGCCCAAAAACATAGTGGTCATTGATGATGACAAAAGTGA
GACTTGCCCGGAAGACTTGGCAGCAGCTGCTGATGACAAGTCTTTAGAACGAGTGTCACTATCT
GCAGAAAGTCTCCTGAAGGCAGCGACTGCCGTCCGAGGTGGGAAAAACTCATCTCCTATGAACT
GCTCCAGAGCAGAGAAGGGTGTGACTAGAGTTGTGAACATCACTTCCCCTGCTCACGATGCTTC
ATCCAGGTGTCCTACCACCACAGCACCCGTGTCAGCAGCAGCAGCTCCAAGGACAGTTCGTGTG
GCAATGCAAGTCCCTGTGGTAATGACATCACTGGGTCAAAAGATTTCCACTGTGGCAGTTCAGT
CAGTCAATGCAGGCACACCATTAATAACCAGCACCAGTCCAGCTACAGCCAGCTCTCCAAAAGT
AGTCATCCAGACGGTCCCGACTGTGATGCCAGCCTCCGCTGAGAATGGAGACAGAATCACCATG
CAGCCTGCCAAGATTATCACCATCCCCGCTACCCAGCTTGCACAGTGTCAGCTGCAGACAAAGT
CAAATCTGACTGGGTCAGGAAGCATTAGCCTTGTTGGAACCCCCCTGGCTGTGAGAGCGCTCAC
CCCTGTTTCAATAGCCCACGGTACACCTGTGATGAGACTATCTGTGCCCGCTCAGCAGGCTTCT
GGCCAGACTCCTCCTCGAGTTATCAGTGCGGTCATAAAAGGGCCAGAGGTTAAATCAGAAGCCA
AAAAGCAGGAACACGATGTGAAAACTTTGCAGCTGGTAGAAGAAAAGGGGGCAGACGGAAATAA
GACAGTAACCCATGTAGTGGTTGTCAGTGCGCCCTCTGCTATCGCCCTTCCTGTGACTATGAAA
ACCGAAGGGCTGGTGACGTGTGAGAAATAAGCAAGCTCCCAGGGACTTCAGACTGTTAGTGTTG
TACTGACAGACATTTGCAAGGGAAGTCATCGGGAAAAGGCAGAGGAGGACTTTCAAACAACTGT
GCATAGAAGAAAGCAATCAGACTTACTGGAAATAAATTACCTATCCCATGTTTCAGTGGGAAGT
GAACTACACATTGAGATGCTGACAGAAAACTGCCTCTTAAAGTAAGAACAACTGAACCCTCAAT
AAGAAAAAAGACTGAAAGGGACCAAGCAGCTCACTACAATCTCCCGTTACACTAAGAGTTGGAA
CACTAACACCTGTAAGAGGTTACATAGTTTTCAGAGGGGCGGGGTTGGGATGGGTGATGTCATT
GTTACAAATAGCATTTTTTGATGCATTTTATATGCATACCAGCAATTAGCACTGGGCTCTCGCA
GTGCTCACTTAACTGGTGCTATGTGAAGACTCTGCTAATACAGGTATTCTAGAATGTGAACTGA
GTGATCCAAAAGCTTCACAGAGAGAGAGGATAGCAAGATCTAGTGCGCTTTTGTTTGTTTGTTT
TGTTTTATTTTTTGATTTTGAATATATATATATATATATCATAGCTTAAGCTGTTTTAAAACAA
AGGCCTTAGACTAATTTTCAGTTTCCTTTCTTGAAATAAGCTAATGGCTTGTGTAAAGCTTTTT
TATTAAAAGAAAAATTTTAAAAATCTTGTACCTAGCACAGTATTGTTATAGAGTTTCCATGTAA
CATTTTCTATGGTAGTTTAAGTCTGTCGGTTTCTTACTTGTGAAGAGATTAACAGTTGGCTCTG
GCCCTTGACTGTACCATCCCTGCGCCGCTCAAGTCACCCTGCCGTCCGTCCGTCCGTCCGTCCG
TCCTTCCGTCCGCAGACACACCGGTATCAGTTCTTCTGTCATTTGACATTCAGGCTCGCATGAA
CTCGCCAGGTAGCTCTGATACCTGGTGTTTGTTTCCTTTCTCATTCTTTTTCCTTTTCTCCCTT
TTTTCTCTTTTTCTTTTTTAGTTGACATTTAAGAGGGAAAGTACCAGTGTTCAGATTTGAACTA
TAATAGTTTGTATATTCAACATTTGAAGTATATTCTATTTTGTTGTACTCTTGTTTCAAAGTGT
ATTCAAGTAGGTTTTGAAATATAGAAGTGAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001033909 ⟹ NP_001029081

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	135,294,905 - 135,372,043 (-)	NCBI
Rnor_6.0	2	140,310,374 - 140,387,505 (-)	NCBI
Rnor_5.0	2	159,783,379 - 159,874,677 (-)	NCBI
RGSC_v3.4	2	140,144,023 - 140,221,693 (-)	RGD
Celera	2	129,790,803 - 129,867,968 (-)	RGD

Sequence:

show sequence

AGTAGCTCCAGAGAGCTGCTGGTTTAGAGTTCAGCTCTTGGGAGTGTGGAAACGGTGAAGGATG
CTTAGACTACTTAACCGTCAAACTACCCTCTGGTTAATCATCTTTAGAAGACTGGACTTCTGGA
TGTCTACTCCATCACTATTGAATTAGAACATGAAACCGATAACCCTGGCAATCATCTGAGCCGT
AATTACATTGATTCGCAGCGTTCGAAACTTGCTCAGGGAAGACGCGATGGCATCAGCAGTGGTT
GGCGGCGGAGGCTCTGTTCTGGAGCTTTCCAGCAATGGAGTAGAAAATCAAGAGGGAGGGGACA
CGGTCCCTGAATTTCCGGCAGTGATTGTGGAGCCCGTCCCCAGTGCGAGGTTAGAGCAGGGCTA
CGCTGCCCAGGTGCTGGTGTATGACGATGAGACTTACATGATGCAGGATGTGGCGGAAGAACAA
GAAGTTGAGACGGAGAATTCAGAAACAGTGGAAGCATCAGTTCACAGCAGTAATGCACACTGTA
CGGATAAGACCATTGAAGCTGCTGAAGCCCTGCTTCATATGGAGTCTCCTACCTGCTTGAGGGA
TTCAAGAAGTCCCGTGGAAGTGTTTGTCCCTCCTTGTATATCAACTCCAGAGTTTATCCATGCT
GCGATGAGGCCAGATGTCATTACGGAGACTGTAGTGGAGGTGTCAACAGAGGAGTCTGAACCAA
TGGATGCCTCGCCTATCCCTACTTCACCAGACAGCCACGAACCAATGAAAAAGAAGAAAGTTGG
CCGTAAACCAAAGACCCAGCAGTCACCAGTTTCCAATGGGTCTCCTGAGTTAGGAGTCAAGAAG
AAAGCCAGAGAAGGAAAAGGAAACACAACCTATCTGTGGGAGTTTCTTTTAGATCTGCTTCAAG
ATAAAAATACTTGTCCCAGGTATATTAAATGGACTCAGAGAGAAAAGGGCATATTCAAGCTGGT
GGACTCAAAGGCTGTCTCGAAGCTCTGGGGAAAGCATAAGAACAAACCAGACATGAACTATGAA
ACTATGGGGCGAGCTCTGAGATACTACTACCAAAGGGGAATTCTTGCAAAGGTTGAAGGACAGA
GGCTCGTATATCAGTTCAAGGACATGCCCAAAAACATAGTGGTCATTGATGATGACAAAAGTGA
GACTTGCCCGGAAGACTTGGCAGCAGCTGCTGATGACAAGTCTTTAGAACGAGTGTCACTATCT
GCAGAAAGTCTCCTGAAGGCAGCGACTGCCGTCCGAGGTGGGAAAAACTCATCTCCTATGAACT
GCTCCAGAGCAGAGAAGGGTGTGACTAGAGTTGTGAACATCACTTCCCCTGCTCACGATGCTTC
ATCCAGGTGTCCTACCACCACAGCACCCGTGTCAGCAGCAGCAGCTCCAAGGACAGTTCGTGTG
GCAATGCAAGTCCCTGTGGTAATGACATCACTGGGTCAAAAGATTTCCACTGTGGCAGTTCAGT
CAGTCAATGCAGGCACACCATTAATAACCAGCACCAGTCCAGCTACAGCCAGCTCTCCAAAAGT
AGTCATCCAGACGGTCCCGACTGTGATGCCAGCCTCCGCTGAGAATGGAGACAGAATCACCATG
CAGCCTGCCAAGATTATCACCATCCCCGCTACCCAGCTTGCACAGTGTCAGCTGCAGACAAAGT
CAAATCTGACTGGGTCAGGAAGCATTAGCCTTGTTGGAACCCCCCTGGCTGTGAGAGCGCTCAC
CCCTGTTTCAATAGCCCACGGTACACCTGTGATGAGACTATCTGTGCCCGCTCAGCAGGCTTCT
GGCCAGACTCCTCCTCGAGTTATCAGTGCGGTCATAAAAGGGCCAGAGGTTAAATCAGAAGCCA
AAAAGCAGGAACACGATGTGAAAACTTTGCAGCTGGTAGAAGAAAAGGGGGCAGACGGAAATAA
GACAGTAACCCATGTAGTGGTTGTCAGTGCGCCCTCTGCTATCGCCCTTCCTGTGACTATGAAA
ACCGAAGGGCTGGTGACGTGTGAGAAATAAGCAAGCTCCCAGGGACTTCAGACTGTTAGTGTTG
TACTGACAGACATTTGCAAGGGAAGTCATCGGGAAAAGGCAGAGGAGGACTTTCAAACAACTGT
GCATAGAAGAAAGCAATCAGACTTACTGGAAATAAATTACCTATCCCATGTTTCAGTGGGAAGT
GAACTACACATTGAGATGCTGACAGAAAACTGCCTCTTAAAGTAAGAACAACTGAACCCTCAAT
AAGAAAAAAGACTGAAAGGGACCAAGCAGCTCACTACAATCTCCCGTTACACTAAGAGTTGGAA
CACTAACACCTGTAAGAGGTTACATAGTTTTCAGAGGGGCGGGGTTGGGATGGGTGATGTCATT
GTTACAAATAGCATTTTTTGATGCATTTTATATGCATACCAGCAATTAGCACTGGGCTCTCGCA
GTGCTCACTTAACTGGTGCTATGTGAAGACTCTGCTAATACAGGTATTCTAGAATGTGAACTGA
GTGATCCAAAAGCTTCACAGAGAGAGAGGATAGCAAGATCTAGTGCGCTTTTGTTTGTTTGTTT
TGTTTTATTTTTTGATTTTGAATATATATATATATATATCATAGCTTAAGCTGTTTTAAAACAA
AGGCCTTAGACTAATTTTCAGTTTCCTTTCTTGAAATAAGCTAATGGCTTGTGTAAAGCTTTTT
TATTAAAAGAAAAATTTTAAAAATCTTGTACCTAGCACAGTATTGTTATAGAGTTTCCATGTAA
CATTTTCTATGGTAGTTTAAGTCTGTCGGTTTCTTACTTGTGAAGAGATTAACAGTTGGCTCTG
GCCCTTGACTGTACCATCCCTGCGCCGCTCAAGTCACCCTGCCGTCCGTCCGTCCGTCCGTCCG
TCCTTCCGTCCGCAGACACACCGGTATCAGTTCTTCTGTCATTTGACATTCAGGCTCGCATGAA
CTCGCCAGGTAGCTCTGATACCTGGTGTTTGTTTCCTTTCTCATTCTTTTTCCTTTTCTCCCTT
TTTTCTCTTTTTCTTTTTTAGTTGACATTTAAGAGGGAAAGTACCAGTGTTCAGATTTGAACTA
TAATAGTTTGTATATTCAACATTTGAAGTATATTCTATTTTGTTGTACTCTTGTTTCAAAGTGT
ATTCAAGTAGGTTTTGAAATATAGAAGTGAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232325 ⟹ XP_006232387

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	135,292,291 - 135,385,562 (-)	NCBI
Rnor_6.0	2	140,310,374 - 140,399,312 (-)	NCBI
Rnor_5.0	2	159,783,379 - 159,874,677 (-)	NCBI

Sequence:

show sequence

AGCTGGGGGCAGGGCGGGAGCCCGCACCGGAGCGGCCCGGGGCAACGGTCGTGGCGCCGAGGGA
CCGCGGCGCGCGCTGTTTACCTCGCGGCGCCAGTCATCGCGCGGCGGCCAGGCTGCCGGGGAAG
CGCTTCCCGGGCGGCAGTTTCCGTCGCCGTCGGGCCTGCTCGCCGCCGCCCGGGCGGGCACGAC
AGTAGCTCCAGAGAGCTGCTGGTTTAGAGTTCAGCTCTTGGGAGTGTGGAAACGGTGAAGGATG
CTTAGACTACTTAACCGTCAAACTACCCTCTGGTTAATCATCTTTAGAAGACTGGACTTCTGGA
TGTCTACTCCATCACTATTGAATTAGAACATGAAACCGATAACCCTGGCAATCATCTGAGCCGT
AATTACATTGATTCGCAGCGTTCGAAACTTGCTCAGGGAAGACGCGATGGCATCAGCAGTGGTT
GGCGGCGGAGGCTCTGTTCTGGAGCTTTCCAGCAATGGAGTAGAAAATCAAGAGGGAGGGGACA
CGGTCCCTGAATTTCCGGCAGTGATTGTGGAGCCCGTCCCCAGTGCGAGGTTAGAGCAGGGCTA
CGCTGCCCAGGTGCTGGTGTATGACGATGAGACTTACATGATGCAGGATGTGGCGGAAGAACAA
GAAGTTGAGACGGAGAATTCAGAAACAGTGGAAGCATCAGTTCACAGCAGTAATGCACACTGTA
CGGATAAGACCATTGAAGCTGCTGAAGCCCTGCTTCATATGGAGTCTCCTACCTGCTTGAGGGA
TTCAAGAAGTCCCGTGGAAGTGTTTGTCCCTCCTTGTATATCAACTCCAGAGTTTATCCATGCT
GCGATGAGGCCAGATGTCATTACGGAGACTGTAGTGGAGGTGTCAACAGAGGAGTCTGAACCAA
TGGATGCCTCGCCTATCCCTACTTCACCAGACAGCCACGAACCAATGAAAAAGAAGAAAGTTGG
CCGTAAACCAAAGACCCAGCAGTCACCAGTTTCCAATGGGTCTCCTGAGTTAGGAGTCAAGAAG
AAAGCCAGAGAAGGAAAAGGAAACACAACCTATCTGTGGGAGTTTCTTTTAGATCTGCTTCAAG
ATAAAAATACTTGTCCCAGGTATATTAAATGGACTCAGAGAGAAAAGGGCATATTCAAGCTGGT
GGACTCAAAGGCTGTCTCGAAGCTCTGGGGAAAGCATAAGAACAAACCAGACATGAACTATGAA
ACTATGGGGCGAGCTCTGAGATACTACTACCAAAGGGGAATTCTTGCAAAGGTTGAAGGACAGA
GGCTCGTATATCAGTTCAAGGACATGCCCAAAAACATAGTGGTCATTGATGATGACAAAAGTGA
GACTTGCCCGGAAGACTTGGCAGCAGCTGCTGATGACAAGTCTTTAGAACGAGTGTCACTATCT
GCAGAAAGTCTCCTGAAGGCAGCGACTGCCGTCCGAGGTGGGAAAAACTCATCTCCTATGAACT
GCTCCAGAGCAGAGAAGGGTGTGACTAGAGTTGTGAACATCACTTCCCCTGCTCACGATGCTTC
ATCCAGGTGTCCTACCACCACAGCACCCGTGTCAGCAGCAGCAGCTCCAAGGACAGTTCGTGTG
GCAATGCAAGTCCCTGTGGTAATGACATCACTGGGTCAAAAGATTTCCACTGTGGCAGTTCAGT
CAGTCAATGCAGGCACACCATTAATAACCAGCACCAGTCCAGCTACAGCCAGCTCTCCAAAAGT
AGTCATCCAGACGGTCCCGACTGTGATGCCAGCCTCCGCTGAGAATGGAGACAGAATCACCATG
CAGCCTGCCAAGATTATCACCATCCCCGCTACCCAGCTTGCACAGTGTCAGCTGCAGACAAAGT
CAAATCTGACTGGGTCAGGAAGCATTAGCCTTGTTGGAACCCCCCTGGCTGTGAGAGCGCTCAC
CCCTGTTTCAATAGCCCACGGTACACCTGTGATGAGACTATCTGTGCCCGCTCAGCAGGCTTCT
GGCCAGACTCCTCCTCGAGTTATCAGTGCGGTCATAAAAGGGCCAGAGGTTAAATCAGAAGCCA
AAAAGCAGGAACACGATGTGAAAACTTTGCAGCTGGTAGAAGAAAAGGGGGCAGACGGAAATAA
GACAGTAACCCATGTAGTGGTTGTCAGTGCGCCCTCTGCTATCGCCCTTCCTGTGACTATGAAA
ACCGAAGGGCTGGTGACGTGTGAGAAATAAGCAAGCTCCCAGGGACTTCAGACTGTTAGTGTTG
TACTGACAGACATTTGCAAGGGAAGTCATCGGGAAAAGGCAGAGGAGGACTTTCAAACAACTGT
GCATAGAAGAAAGCAATCAGACTTACTGGAAATAAATTACCTATCCCATGTTTCAGTGGGAAGT
GAACTACACATTGAGATGCTGACAGAAAACTGCCTCTTAAAGTAAGAACAACTGAACCCTCAAT
AAGAAAAAAGACTGAAAGGGACCAAGCAGCTCACTACAATCTCCCGTTACACTAAGAGTTGGAA
CACTAACACCTGTAAGAGGTTACATAGTTTTCAGAGGGGCGGGGTTGGGATGGGTGATGTCATT
GTTACAAATAGCATTTTTTGATGCATTTTATATGCATACCAGCAATTAGCACTGGGCTCTCGCA
GTGCTCACTTAACTGGTGCTATGTGAAGACTCTGCTAATACAGGTATTCTAGAATGTGAACTGA
GTGATCCAAAAGCTTCACAGAGAGAGAGGATAGCAAGATCTAGTGCGCTTTTGTTTGTTTGTTT
TGTTTTATTTTTTGATTTTGAATATATATATATATATATCATAGCTTAAGCTGTTTTAAAACAA
AGGCCTTAGACTAATTTTCAGTTTCCTTTCTTGAAATAAGCTAATGGCTTGTGTAAAGCTTTTT
TATTAAAAGAAAAATTTTAAAAATCTTGTACCTAGCACAGTATTGTTATAGAGTTTCCATGTAA
CATTTTCTATGGTAGTTTAAGTCTGTCGGTTTCTTACTTGTGAAGAGATTAACAGTTGGCTCTG
GCCCTTGACTGTACCATCCCTGCGCCGCTCAAGTCACCCTGCCGTCCGTCCGTCCGTCCGTCCG
TCCTTCCGTCCGCAGACACACCGGTATCAGTTCTTCTGTCATTTGACATTCAGGCTCGCATGAA
CTCGCCAGGTAGCTCTGATACCTGGTGTTTGTTTCCTTTCTCATTCTTTTTCCTTTTCTCCCTT
TTTTCTCTTTTTCTTTTTTAGTTGACATTTAAGAGGGAAAGTACCAGTGTTCAGATTTGAACTA
TAATAGTTTGTATATTCAACATTTGAAGTATATTCTATTTTGTTGTACTCTTGTTTCAAAGTGT
ATTCAAGTAGGTTTTGAAATATAGAAGTGAAATTTA

hide sequence

RefSeq Acc Id:

XM_006232327 ⟹ XP_006232389

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	135,292,291 - 135,318,921 (-)	NCBI
Rnor_6.0	2	140,310,374 - 140,336,943 (-)	NCBI
Rnor_5.0	2	159,783,379 - 159,874,677 (-)	NCBI

Sequence:

show sequence

AAAAAAACAAAACAAAAAAAAAACTCAAAAAACAAAAAGGCAACTACTTACTATCCCACACAGT
TTTTGAGGTTAATGGTTAGGGTGTGGCTTTGACGCAGGGTCCTGGTTCAGGGTCTTCCACGAGG
CTGCAGCCTTGTCAGTTGGGTTATCATCTCAAGACTCGATTAGAGAAAGCTGTCTCCCTGACAG
CTCACTGCACACCGCGCTGGTAGGAGCACCTTTATTCCTGCCCACTGTCTAGCTTTGCGAACTT
GTTGGAGTTGCTTGTGACACAGTATCTGGCCTCCTCCTAGGGTCGTGTCCAGTCACTTCAGCTT
TATTCTGTTTGTTAGGAGTGCAGATTTAAGTTCAGAGAGAGGAAGATTAAGCTACATATTTTTG
AGAAGGAGCTATAAAAGAGAAACTGTAATGAGGAAATTTGTGTGGCATGAGTAGGATGTGACTC
TTGTTCCTGGGGAGAGTTAAGAGTAAAGGTGCTAGAATCAGAGTATTTGGGTTCAAATTCTGAC
CCTTTTGTAATTATTTAAGCAAGGACCCTGAGATCCTTCATCACTCAGGGATTAGAATAGTACT
ATCTGCTGAATAGGGATGTAGACAGGATACATGAATGAAGGTAAAGTACTTAGCATGCAGGCTT
TACCTCTTTTTTTTCTCTTTGCCAGAACTTATAAGTTTATATAGTATTGTCTTTCTATAGTTTT
ATTAGCAGAATATATACCTTTATTTAAGGTATATATTATAAAAGCCTGTGTATTCATACTTAGT
TAAAATTCTGCTTATAACTAACTTTGATCATGGAGACTTGAAAAAATGCAAATGTGTTTGTATA
TTCATAAAGGTATACATATTAGATTCTTGATAAATGCAATATTGCCAGTTCATACCTGTATACA
TTCTAGTAGCGGGCCACTCTAGTTACTATTCTCAGTAAATAACTGGTGGCTTTTGAAAGCCTGT
TTTTAAGGCAGGATAGACATGCCTTAACATTGGCGGCATTCTGCTTTATGTTCTGAATGTATAG
AAATACTGTTTTCCAGATGAGTCTTTTTGCATTATTTTCTCTGTACATATGTGCTATGCGTATA
AATTATTATGCAAGAATATATGCAGCTTCTATTTTCTAGGTGCTTAAAATGTAAGTCAGACAGT
GATACAGATAGATAATCAAGATGTACATTCAGCAAAGCATATACATGCTTACACTCACACACAT
TGCCTCAGATATATCTGAAACACAGTTAAGCTAAAAGTTCAAGTGTCCTAGATTGAGAAATCTA
TTTTATTGTTTTTAAGCCACATTAATCTGTCACCTACACACCACACACATCCCTTCCTTTGGTT
TCCATTTACCTACAAATAGAATACATGGAAAATGTGTTACTGGAGCAGAAATTCTGATTTGTTA
TCAGTTTCAATGATCTGCCTAAAGTCATTAAATTACCCTTTGGTATTCCTTATCTTTCTTGATA
TAGAAACTGTTAAAGATGCTGCCTGTCAATGGCAGATTCTTATTTCTAAATGATAGCAAAGAAA
AATAAGAGCTATCAGTTAGCTGATTCCTTTTGTCCTATGCGTGGCAGTCTTAAGTAAACCCATC
TTGATGCTGCAGTGGTGTTGGGTAAACTTATAAAACCATATCATGTTATATTACTGTCAAACTT
TATATGCAGTTAATTGAGATAAAATGTGTAACCCTACCATTACAGATGATTATTTTTTATTCAG
TAACTTTTATTGAACAAACAAAATGTATTGGGAGGTGCATTTTACATAAAATGTGTGGTGAACA
ACTTTGGGGTAACATTTTGTTTCAGTTTTTATGTTAAGATATTCTGAAACAGGCAAGGCATTTA
GTTAGGTCTTATTCCCTGTATTTCCACTAATTTATTGCCACTAATTAGCCATTATTTTCCTTTC
CTTGTTATAGTATGTCACTTTAAAGGAAAACGGTTTTTTAAAAGATGATTTATATCTTTAAGCT
ATGGGTGGATACGTTCATCTGTCCAAGTCAACCAAATAAAAGTGAGGGCACAGGAATTTCATGG
CCAGCAAACCGAGCGACTCTAATCCAGTCTCCCCGAGGCTGCCCGGCGGCTCTTTTCTGTTTAC
TAATTACCTGTCTAGTGTACTCTGACTTCTGTAGAGAAGGCAGGACCAAGTCGTTTTTGAAGTA
GTTGGAGACTCCTGACTTCCCTAGTGATGTTTCTAGAATATTTTCTAGGTACAAGTTTTTTAAA
GTGCAGTTCCTTCAACGGAACTGATTGTATGTTGCATAAGCGCTGGGAAGGCCAAAACAAGTTA
AAAAGCCACCTTTATGTACAGCTGCGGGACTAGGAATTAGGTCTTTTCTAGGAAGAAAAATTTG
ATTCATGGCTCTTTTCCAGAGGGGACATTTGCAGACTTCGCTTCCGCAGAACGTGAAGCGCGCC
TCTTCCTGCCGAGGCCCGCGTCCCCGAGGGCGGCCTGCGGCTCCCCAGCCTCAGGTGTCCGTGC
GGCCGCTGGCTGCCGGCGCCCGGGACTTCCTGTCTGGGCGCGGGGCGGAAGGATCGCGTTGCCA
GCCGGGGCCGCCGCCGCCCCTGCCGTTAGGTGGTGGGGCTGCTCAGCCCGGCGGCGGGAGGCGG
GCCGGCCGCCGCTTCCTGTCGGAGGACGCGCAAGGATCCGGGCGTCGGAGTGTGTGCGAGTGCG
TGAGTGTGTGCCGCCCGCACGGCGTGTGTCTCCGGCCGCGGGTTCCGCCTTCTCCCCTGTCGCC
GCTGCTCAGGGTGTAAGTCAATGTGAAGCAGCAGTTCCAGCCCCGGGATAAACATGGCGACGTC
TCTGCATGAGGGACCCACGAACCAGCTGGATCTGCTCATCCGGGCCGTGGAAGCATCAGTTCAC
AGCAGTAATGCACACTGTACGGATAAGACCATTGAAGCTGCTGAAGCCCTGCTTCATATGGAGT
CTCCTACCTGCTTGAGGGATTCAAGAAGTCCCGTGGAAGTGTTTGTCCCTCCTTGTATATCAAC
TCCAGAGTTTATCCATGCTGCGATGAGGCCAGATGTCATTACGGAGACTGTAGTGGAGGTGTCA
ACAGAGGAGTCTGAACCAATGGATGCCTCGCCTATCCCTACTTCACCAGACAGCCACGAACCAA
TGAAAAAGAAGAAAGTTGGCCGTAAACCAAAGACCCAGCAGTCACCAGTTTCCAATGGGTCTCC
TGAGTTAGGAGTCAAGAAGAAAGCCAGAGAAGGAAAAGGAAACACAACCTATCTGTGGGAGTTT
CTTTTAGATCTGCTTCAAGATAAAAATACTTGTCCCAGGTATATTAAATGGACTCAGAGAGAAA
AGGGCATATTCAAGCTGGTGGACTCAAAGGCTGTCTCGAAGCTCTGGGGAAAGCATAAGAACAA
ACCAGACATGAACTATGAAACTATGGGGCGAGCTCTGAGATACTACTACCAAAGGGGAATTCTT
GCAAAGGTTGAAGGACAGAGGCTCGTATATCAGTTCAAGGACATGCCCAAAAACATAGTGGTCA
TTGATGATGACAAAAGTGAGACTTGCCCGGAAGACTTGGCAGCAGCTGCTGATGACAAGTCTTT
AGAACGAGTGTCACTATCTGCAGAAAGTCTCCTGAAGGCAGCGACTGCCGTCCGAGGTGGGAAA
AACTCATCTCCTATGAACTGCTCCAGAGCAGAGAAGGGTGTGACTAGAGTTGTGAACATCACTT
CCCCTGCTCACGATGCTTCATCCAGGTGTCCTACCACCACAGCACCCGTGTCAGCAGCAGCAGC
TCCAAGGACAGTTCGTGTGGCAATGCAAGTCCCTGTGGTAATGACATCACTGGGTCAAAAGATT
TCCACTGTGGCAGTTCAGTCAGTCAATGCAGGCACACCATTAATAACCAGCACCAGTCCAGCTA
CAGCCAGCTCTCCAAAAGTAGTCATCCAGACGGTCCCGACTGTGATGCCAGCCTCCGCTGAGAA
TGGAGACAGAATCACCATGCAGCCTGCCAAGATTATCACCATCCCCGCTACCCAGCTTGCACAG
TGTCAGCTGCAGACAAAGTCAAATCTGACTGGGTCAGGAAGCATTAGCCTTGTTGGAACCCCCC
TGGCTGTGAGAGCGCTCACCCCTGTTTCAATAGCCCACGGTACACCTGTGATGAGACTATCTGT
GCCCGCTCAGCAGGCTTCTGGCCAGACTCCTCCTCGAGTTATCAGTGCGGTCATAAAAGGGCCA
GAGGTTAAATCAGAAGCCAAAAAGCAGGAACACGATGTGAAAACTTTGCAGCTGGTAGAAGAAA
AGGGGGCAGACGGAAATAAGACAGTAACCCATGTAGTGGTTGTCAGTGCGCCCTCTGCTATCGC
CCTTCCTGTGACTATGAAAACCGAAGGGCTGGTGACGTGTGAGAAATAAGCAAGCTCCCAGGGA
CTTCAGACTGTTAGTGTTGTACTGACAGACATTTGCAAGGGAAGTCATCGGGAAAAGGCAGAGG
AGGACTTTCAAACAACTGTGCATAGAAGAAAGCAATCAGACTTACTGGAAATAAATTACCTATC
CCATGTTTCAGTGGGAAGTGAACTACACATTGAGATGCTGACAGAAAACTGCCTCTTAAAGTAA
GAACAACTGAACCCTCAATAAGAAAAAAGACTGAAAGGGACCAAGCAGCTCACTACAATCTCCC
GTTACACTAAGAGTTGGAACACTAACACCTGTAAGAGGTTACATAGTTTTCAGAGGGGCGGGGT
TGGGATGGGTGATGTCATTGTTACAAATAGCATTTTTTGATGCATTTTATATGCATACCAGCAA
TTAGCACTGGGCTCTCGCAGTGCTCACTTAACTGGTGCTATGTGAAGACTCTGCTAATACAGGT
ATTCTAGAATGTGAACTGAGTGATCCAAAAGCTTCACAGAGAGAGAGGATAGCAAGATCTAGTG
CGCTTTTGTTTGTTTGTTTTGTTTTATTTTTTGATTTTGAATATATATATATATATATCATAGC
TTAAGCTGTTTTAAAACAAAGGCCTTAGACTAATTTTCAGTTTCCTTTCTTGAAATAAGCTAAT
GGCTTGTGTAAAGCTTTTTTATTAAAAGAAAAATTTTAAAAATCTTGTACCTAGCACAGTATTG
TTATAGAGTTTCCATGTAACATTTTCTATGGTAGTTTAAGTCTGTCGGTTTCTTACTTGTGAAG
AGATTAACAGTTGGCTCTGGCCCTTGACTGTACCATCCCTGCGCCGCTCAAGTCACCCTGCCGT
CCGTCCGTCCGTCCGTCCGTCCTTCCGTCCGCAGACACACCGGTATCAGTTCTTCTGTCATTTG
ACATTCAGGCTCGCATGAACTCGCCAGGTAGCTCTGATACCTGGTGTTTGTTTCCTTTCTCATT
CTTTTTCCTTTTCTCCCTTTTTTCTCTTTTTCTTTTTTAGTTGACATTTAAGAGGGAAAGTACC
AGTGTTCAGATTTGAACTATAATAGTTTGTATATTCAACATTTGAAGTATATTCTATTTTGTTG
TACTCTTGTTTCAAAGTGTATTCAAGTAGGTTTTGAAATATAGAAGTGAAATTTA

hide sequence

RefSeq Acc Id:

XM_006232328 ⟹ XP_006232390

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	135,292,291 - 135,351,212 (-)	NCBI
Rnor_6.0	2	140,310,374 - 140,366,142 (-)	NCBI
Rnor_5.0	2	159,783,379 - 159,874,677 (-)	NCBI

Sequence:

show sequence

CCAGGTGCTGGTGTATGACGATGAGACTTACATGATGCAGGATGTGGCGGAAGAACAAGAAGTT
GAGACGGAGAATTCAGAAACAGGGAGGTAGAAGATCGACTTGAGAAACTGGGGACCTGGAAAGG
AGCCCCAGTCCTAGGATCACCTGAAGGTGAGACAGATTGAGCCAGGAGGAAGACCATGCTGTGG
AAGCATCAGTTCACAGCAGTAATGCACACTGTACGGATAAGACCATTGAAGCTGCTGAAGCCCT
GCTTCATATGGAGTCTCCTACCTGCTTGAGGGATTCAAGAAGTCCCGTGGAAGTGTTTGTCCCT
CCTTGTATATCAACTCCAGAGTTTATCCATGCTGCGATGAGGCCAGATGTCATTACGGAGACTG
TAGTGGAGGTGTCAACAGAGGAGTCTGAACCAATGGATGCCTCGCCTATCCCTACTTCACCAGA
CAGCCACGAACCAATGAAAAAGAAGAAAGTTGGCCGTAAACCAAAGACCCAGCAGTCACCAGTT
TCCAATGGGTCTCCTGAGTTAGGAGTCAAGAAGAAAGCCAGAGAAGGAAAAGGAAACACAACCT
ATCTGTGGGAGTTTCTTTTAGATCTGCTTCAAGATAAAAATACTTGTCCCAGGTATATTAAATG
GACTCAGAGAGAAAAGGGCATATTCAAGCTGGTGGACTCAAAGGCTGTCTCGAAGCTCTGGGGA
AAGCATAAGAACAAACCAGACATGAACTATGAAACTATGGGGCGAGCTCTGAGATACTACTACC
AAAGGGGAATTCTTGCAAAGGTTGAAGGACAGAGGCTCGTATATCAGTTCAAGGACATGCCCAA
AAACATAGTGGTCATTGATGATGACAAAAGTGAGACTTGCCCGGAAGACTTGGCAGCAGCTGCT
GATGACAAGTCTTTAGAACGAGTGTCACTATCTGCAGAAAGTCTCCTGAAGGCAGCGACTGCCG
TCCGAGGTGGGAAAAACTCATCTCCTATGAACTGCTCCAGAGCAGAGAAGGGTGTGACTAGAGT
TGTGAACATCACTTCCCCTGCTCACGATGCTTCATCCAGGTGTCCTACCACCACAGCACCCGTG
TCAGCAGCAGCAGCTCCAAGGACAGTTCGTGTGGCAATGCAAGTCCCTGTGGTAATGACATCAC
TGGGTCAAAAGATTTCCACTGTGGCAGTTCAGTCAGTCAATGCAGGCACACCATTAATAACCAG
CACCAGTCCAGCTACAGCCAGCTCTCCAAAAGTAGTCATCCAGACGGTCCCGACTGTGATGCCA
GCCTCCGCTGAGAATGGAGACAGAATCACCATGCAGCCTGCCAAGATTATCACCATCCCCGCTA
CCCAGCTTGCACAGTGTCAGCTGCAGACAAAGTCAAATCTGACTGGGTCAGGAAGCATTAGCCT
TGTTGGAACCCCCCTGGCTGTGAGAGCGCTCACCCCTGTTTCAATAGCCCACGGTACACCTGTG
ATGAGACTATCTGTGCCCGCTCAGCAGGCTTCTGGCCAGACTCCTCCTCGAGTTATCAGTGCGG
TCATAAAAGGGCCAGAGGTTAAATCAGAAGCCAAAAAGCAGGAACACGATGTGAAAACTTTGCA
GCTGGTAGAAGAAAAGGGGGCAGACGGAAATAAGACAGTAACCCATGTAGTGGTTGTCAGTGCG
CCCTCTGCTATCGCCCTTCCTGTGACTATGAAAACCGAAGGGCTGGTGACGTGTGAGAAATAAG
CAAGCTCCCAGGGACTTCAGACTGTTAGTGTTGTACTGACAGACATTTGCAAGGGAAGTCATCG
GGAAAAGGCAGAGGAGGACTTTCAAACAACTGTGCATAGAAGAAAGCAATCAGACTTACTGGAA
ATAAATTACCTATCCCATGTTTCAGTGGGAAGTGAACTACACATTGAGATGCTGACAGAAAACT
GCCTCTTAAAGTAAGAACAACTGAACCCTCAATAAGAAAAAAGACTGAAAGGGACCAAGCAGCT
CACTACAATCTCCCGTTACACTAAGAGTTGGAACACTAACACCTGTAAGAGGTTACATAGTTTT
CAGAGGGGCGGGGTTGGGATGGGTGATGTCATTGTTACAAATAGCATTTTTTGATGCATTTTAT
ATGCATACCAGCAATTAGCACTGGGCTCTCGCAGTGCTCACTTAACTGGTGCTATGTGAAGACT
CTGCTAATACAGGTATTCTAGAATGTGAACTGAGTGATCCAAAAGCTTCACAGAGAGAGAGGAT
AGCAAGATCTAGTGCGCTTTTGTTTGTTTGTTTTGTTTTATTTTTTGATTTTGAATATATATAT
ATATATATCATAGCTTAAGCTGTTTTAAAACAAAGGCCTTAGACTAATTTTCAGTTTCCTTTCT
TGAAATAAGCTAATGGCTTGTGTAAAGCTTTTTTATTAAAAGAAAAATTTTAAAAATCTTGTAC
CTAGCACAGTATTGTTATAGAGTTTCCATGTAACATTTTCTATGGTAGTTTAAGTCTGTCGGTT
TCTTACTTGTGAAGAGATTAACAGTTGGCTCTGGCCCTTGACTGTACCATCCCTGCGCCGCTCA
AGTCACCCTGCCGTCCGTCCGTCCGTCCGTCCGTCCTTCCGTCCGCAGACACACCGGTATCAGT
TCTTCTGTCATTTGACATTCAGGCTCGCATGAACTCGCCAGGTAGCTCTGATACCTGGTGTTTG
TTTCCTTTCTCATTCTTTTTCCTTTTCTCCCTTTTTTCTCTTTTTCTTTTTTAGTTGACATTTA
AGAGGGAAAGTACCAGTGTTCAGATTTGAACTATAATAGTTTGTATATTCAACATTTGAAGTAT
ATTCTATTTTGTTGTACTCTTGTTTCAAAGTGTATTCAAGTAGGTTTTGAAATATAGAAGTGAA
ATTTA

hide sequence

RefSeq Acc Id:

XM_006232329 ⟹ XP_006232391

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	135,292,291 - 135,351,212 (-)	NCBI
Rnor_6.0	2	140,310,374 - 140,366,142 (-)	NCBI
Rnor_5.0	2	159,783,379 - 159,874,677 (-)	NCBI

Sequence:

show sequence

CCAGGTGCTGGTGTATGACGATGAGACTTACATGATGCAGGATGTGGCGGAAGAACAAGAAGTT
GAGACGGAGAATTCAGAAACAGGGAGGTAGAAGATCGACTTGAGAAACTGGGGACCTGGAAAGG
AGCCCCAGTCCTAGGATCACCTGAAGGTGAGACAGATTGAGCCAGGAGGAAGACCATGCTGTGG
AAGCATCAGTTCACAGCAGTAATGCACACTGTACGGATAAGACCATTGAAGCTGCTGAAGCCCT
GCTTCATATGGAGTCTCCTACCTGCTTGAGGGATTCAAGAAGTCCCGAGTTTATCCATGCTGCG
ATGAGGCCAGATGTCATTACGGAGACTGTAGTGGAGGTGTCAACAGAGGAGTCTGAACCAATGG
ATGCCTCGCCTATCCCTACTTCACCAGACAGCCACGAACCAATGAAAAAGAAGAAAGTTGGCCG
TAAACCAAAGACCCAGCAGTCACCAGTTTCCAATGGGTCTCCTGAGTTAGGAGTCAAGAAGAAA
GCCAGAGAAGGAAAAGGAAACACAACCTATCTGTGGGAGTTTCTTTTAGATCTGCTTCAAGATA
AAAATACTTGTCCCAGGTATATTAAATGGACTCAGAGAGAAAAGGGCATATTCAAGCTGGTGGA
CTCAAAGGCTGTCTCGAAGCTCTGGGGAAAGCATAAGAACAAACCAGACATGAACTATGAAACT
ATGGGGCGAGCTCTGAGATACTACTACCAAAGGGGAATTCTTGCAAAGGTTGAAGGACAGAGGC
TCGTATATCAGTTCAAGGACATGCCCAAAAACATAGTGGTCATTGATGATGACAAAAGTGAGAC
TTGCCCGGAAGACTTGGCAGCAGCTGCTGATGACAAGTCTTTAGAACGAGTGTCACTATCTGCA
GAAAGTCTCCTGAAGGCAGCGACTGCCGTCCGAGGTGGGAAAAACTCATCTCCTATGAACTGCT
CCAGAGCAGAGAAGGGTGTGACTAGAGTTGTGAACATCACTTCCCCTGCTCACGATGCTTCATC
CAGGTGTCCTACCACCACAGCACCCGTGTCAGCAGCAGCAGCTCCAAGGACAGTTCGTGTGGCA
ATGCAAGTCCCTGTGGTAATGACATCACTGGGTCAAAAGATTTCCACTGTGGCAGTTCAGTCAG
TCAATGCAGGCACACCATTAATAACCAGCACCAGTCCAGCTACAGCCAGCTCTCCAAAAGTAGT
CATCCAGACGGTCCCGACTGTGATGCCAGCCTCCGCTGAGAATGGAGACAGAATCACCATGCAG
CCTGCCAAGATTATCACCATCCCCGCTACCCAGCTTGCACAGTGTCAGCTGCAGACAAAGTCAA
ATCTGACTGGGTCAGGAAGCATTAGCCTTGTTGGAACCCCCCTGGCTGTGAGAGCGCTCACCCC
TGTTTCAATAGCCCACGGTACACCTGTGATGAGACTATCTGTGCCCGCTCAGCAGGCTTCTGGC
CAGACTCCTCCTCGAGTTATCAGTGCGGTCATAAAAGGGCCAGAGGTTAAATCAGAAGCCAAAA
AGCAGGAACACGATGTGAAAACTTTGCAGCTGGTAGAAGAAAAGGGGGCAGACGGAAATAAGAC
AGTAACCCATGTAGTGGTTGTCAGTGCGCCCTCTGCTATCGCCCTTCCTGTGACTATGAAAACC
GAAGGGCTGGTGACGTGTGAGAAATAAGCAAGCTCCCAGGGACTTCAGACTGTTAGTGTTGTAC
TGACAGACATTTGCAAGGGAAGTCATCGGGAAAAGGCAGAGGAGGACTTTCAAACAACTGTGCA
TAGAAGAAAGCAATCAGACTTACTGGAAATAAATTACCTATCCCATGTTTCAGTGGGAAGTGAA
CTACACATTGAGATGCTGACAGAAAACTGCCTCTTAAAGTAAGAACAACTGAACCCTCAATAAG
AAAAAAGACTGAAAGGGACCAAGCAGCTCACTACAATCTCCCGTTACACTAAGAGTTGGAACAC
TAACACCTGTAAGAGGTTACATAGTTTTCAGAGGGGCGGGGTTGGGATGGGTGATGTCATTGTT
ACAAATAGCATTTTTTGATGCATTTTATATGCATACCAGCAATTAGCACTGGGCTCTCGCAGTG
CTCACTTAACTGGTGCTATGTGAAGACTCTGCTAATACAGGTATTCTAGAATGTGAACTGAGTG
ATCCAAAAGCTTCACAGAGAGAGAGGATAGCAAGATCTAGTGCGCTTTTGTTTGTTTGTTTTGT
TTTATTTTTTGATTTTGAATATATATATATATATATCATAGCTTAAGCTGTTTTAAAACAAAGG
CCTTAGACTAATTTTCAGTTTCCTTTCTTGAAATAAGCTAATGGCTTGTGTAAAGCTTTTTTAT
TAAAAGAAAAATTTTAAAAATCTTGTACCTAGCACAGTATTGTTATAGAGTTTCCATGTAACAT
TTTCTATGGTAGTTTAAGTCTGTCGGTTTCTTACTTGTGAAGAGATTAACAGTTGGCTCTGGCC
CTTGACTGTACCATCCCTGCGCCGCTCAAGTCACCCTGCCGTCCGTCCGTCCGTCCGTCCGTCC
TTCCGTCCGCAGACACACCGGTATCAGTTCTTCTGTCATTTGACATTCAGGCTCGCATGAACTC
GCCAGGTAGCTCTGATACCTGGTGTTTGTTTCCTTTCTCATTCTTTTTCCTTTTCTCCCTTTTT
TCTCTTTTTCTTTTTTAGTTGACATTTAAGAGGGAAAGTACCAGTGTTCAGATTTGAACTATAA
TAGTTTGTATATTCAACATTTGAAGTATATTCTATTTTGTTGTACTCTTGTTTCAAAGTGTATT
CAAGTAGGTTTTGAAATATAGAAGTGAAATTTA

hide sequence

RefSeq Acc Id:

XM_008760992 ⟹ XP_008759214

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	140,310,374 - 140,388,130 (-)	NCBI

Sequence:

show sequence

TACCAGCAACCACATGGTGGCTCATAACCATCTATAAAAAAAGGGATCTTGTGTCCTCGTCTGG
CTTTTGTAGGTGTACGTGCAGATAGAGGACTTGTAGATTAAAAATAAAGTTTCTAAAAGATTTA
AAAAAAACCCACAAGCCCAACAACTAGCCAGCACAAGGAGTTAGATTGCCACCACTTGGGGACG
TTTGGTTGGCACTCAGAGATGGTTCATCAGTTAAGTGCATCACCTGCTCTTTGACTCTGGCACA
CATGTTTCCTCATGACCTTCTGTGCCTAGTCTTAGGGGCTGCATCCTTCAATGCTTTTGAAACA
TAAAAATAAAAAGAAGCCTATTGGTTGATTGAATTATACTCCGTAATATGGGGCATAGTCTGTG
TATGTTGGATCGGACCTTACTTAATGATTAGCATTTAGTGGTAACTTAAAATTGCATCATTGAT
TATAAAGTTTTTAATTCCTTGGTCATCTAGAAATAACGATTCCACATTTGTGCAAATGTGTGCC
ATCAGTCTTTGGAGATGACGTATCTTATTAGGTATTGACTGTCTGAGTCATAGCTAGTTAGGGC
AAACAATTTTAAGAGGGTTGTGTTAACACTTTGTTTTTTCCTTCCCATTAGTAGCTCCAGAGAG
CTGCTGGTTTAGAGTTCAGCTCTTGGGAGTGTGGAAACGGTGAAGGATGCTTAGACTACTTAAC
CGTCAAACTACCCTCTGGTTAATCATCTTTAGAAGACTGGACTTCTGGATGTCTACTCCATCAC
TATTGAATTAGAACATGAAACCGATAACCCTGGCAATCATCTGAGCCGTAATTACATTGATTCG
CAGCGTTCGAAACTTGCTCAGGGAAGACGCGATGGCATCAGCAGTGGTTGGCGGCGGAGGCTCT
GTTCTGGAGCTTTCCAGCAATGGAGTAGAAAATCAAGAGGGAGGGGACACGGTCCCTGAATTTC
CGGCAGTGATTGTGGAGCCCGTCCCCAGTGCGAGGTTAGAGCAGGGCTACGCTGCCCAGGTGCT
GGTGTATGACGATGAGACTTACATGATGCAGGATGTGGCGGAAGAACAAGAAGTTGAGACGGAG
AATTCAGAAACAGTGGAAGCATCAGTTCACAGCAGTAATGCACACTGTACGGATAAGACCATTG
AAGCTGCTGAAGCCCTGCTTCATATGGAGTCTCCTACCTGCTTGAGGGATTCAAGAAGTCCCGA
GTTTATCCATGCTGCGATGAGGCCAGATGTCATTACGGAGACTGTAGTGGAGGTGTCAACAGAG
GAGTCTGAACCAATGGATGCCTCGCCTATCCCTACTTCACCAGACAGCCACGAACCAATGAAAA
AGAAGAAAGTTGGCCGTAAACCAAAGACCCAGCAGTCACCAGTTTCCAATGGGTCTCCTGAGTT
AGGAGTCAAGAAGAAAGCCAGAGAAGGAAAAGGAAACACAACCTATCTGTGGGAGTTTCTTTTA
GATCTGCTTCAAGATAAAAATACTTGTCCCAGGTATATTAAATGGACTCAGAGAGAAAAGGGCA
TATTCAAGCTGGTGGACTCAAAGGCTGTCTCGAAGCTCTGGGGAAAGCATAAGAACAAACCAGA
CATGAACTATGAAACTATGGGGCGAGCTCTGAGATACTACTACCAAAGGGGAATTCTTGCAAAG
GTTGAAGGACAGAGGCTCGTATATCAGTTCAAGGACATGCCCAAAAACATAGTGGTCATTGATG
ATGACAAAAGTGAGACTTGCCCGGAAGACTTGGCAGCAGCTGCTGATGACAAGTCTTTAGAACG
AGTGTCACTATCTGCAGAAAGTCTCCTGAAGGCAGCGACTGCCGTCCGAGGTGGGAAAAACTCA
TCTCCTATGAACTGCTCCAGAGCAGAGAAGGGTGTGACTAGAGTTGTGAACATCACTTCCCCTG
CTCACGATGCTTCATCCAGGTGTCCTACCACCACAGCACCCGTGTCAGCAGCAGCAGCTCCAAG
GACAGTTCGTGTGGCAATGCAAGTCCCTGTGGTAATGACATCACTGGGTCAAAAGATTTCCACT
GTGGCAGTTCAGTCAGTCAATGCAGGCACACCATTAATAACCAGCACCAGTCCAGCTACAGCCA
GCTCTCCAAAAGTAGTCATCCAGACGGTCCCGACTGTGATGCCAGCCTCCGCTGAGAATGGAGA
CAGAATCACCATGCAGCCTGCCAAGATTATCACCATCCCCGCTACCCAGCTTGCACAGTGTCAG
CTGCAGACAAAGTCAAATCTGACTGGGTCAGGAAGCATTAGCCTTGTTGGAACCCCCCTGGCTG
TGAGAGCGCTCACCCCTGTTTCAATAGCCCACGGTACACCTGTGATGAGACTATCTGTGCCCGC
TCAGCAGGCTTCTGGCCAGACTCCTCCTCGAGTTATCAGTGCGGTCATAAAAGGGCCAGAGGTT
AAATCAGAAGCCAAAAAGCAGGAACACGATGTGAAAACTTTGCAGCTGGTAGAAGAAAAGGGGG
CAGACGGAAATAAGACAGTAACCCATGTAGTGGTTGTCAGTGCGCCCTCTGCTATCGCCCTTCC
TGTGACTATGAAAACCGAAGGGCTGGTGACGTGTGAGAAATAAGCAAGCTCCCAGGGACTTCAG
ACTGTTAGTGTTGTACTGACAGACATTTGCAAGGGAAGTCATCGGGAAAAGGCAGAGGAGGACT
TTCAAACAACTGTGCATAGAAGAAAGCAATCAGACTTACTGGAAATAAATTACCTATCCCATGT
TTCAGTGGGAAGTGAACTACACATTGAGATGCTGACAGAAAACTGCCTCTTAAAGTAAGAACAA
CTGAACCCTCAATAAGAAAAAAGACTGAAAGGGACCAAGCAGCTCACTACAATCTCCCGTTACA
CTAAGAGTTGGAACACTAACACCTGTAAGAGGTTACATAGTTTTCAGAGGGGCGGGGTTGGGAT
GGGTGATGTCATTGTTACAAATAGCATTTTTTGATGCATTTTATATGCATACCAGCAATTAGCA
CTGGGCTCTCGCAGTGCTCACTTAACTGGTGCTATGTGAAGACTCTGCTAATACAGGTATTCTA
GAATGTGAACTGAGTGATCCAAAAGCTTCACAGAGAGAGAGGATAGCAAGATCTAGTGCGCTTT
TGTTTGTTTGTTTTGTTTTATTTTTTGATTTTGAATATATATATATATATATCATAGCTTAAGC
TGTTTTAAAACAAAGGCCTTAGACTAATTTTCAGTTTCCTTTCTTGAAATAAGCTAATGGCTTG
TGTAAAGCTTTTTTATTAAAAGAAAAATTTTAAAAATCTTGTACCTAGCACAGTATTGTTATAG
AGTTTCCATGTAACATTTTCTATGGTAGTTTAAGTCTGTCGGTTTCTTACTTGTGAAGAGATTA
ACAGTTGGCTCTGGCCCTTGACTGTACCATCCCTGCGCCGCTCAAGTCACCCTGCCGTCCGTCC
GTCCGTCCGTCCGTCCTTCCGTCCGCAGACACACCGGTATCAGTTCTTCTGTCATTTGACATTC
AGGCTCGCATGAACTCGCCAGGTAGCTCTGATACCTGGTGTTTGTTTCCTTTCTCATTCTTTTT
CCTTTTCTCCCTTTTTTCTCTTTTTCTTTTTTAGTTGACATTTAAGAGGGAAAGTACCAGTGTT
CAGATTTGAACTATAATAGTTTGTATATTCAACATTTGAAGTATATTCTATTTTGTTGTACTCT
TGTTTCAAAGTGTATTCAAGTAGGTTTTGAAATATAGAAGTGAAATTTA

hide sequence

RefSeq Acc Id:

XM_039102597 ⟹ XP_038958525

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	135,292,291 - 135,385,942 (-)	NCBI

RefSeq Acc Id:

XM_039102598 ⟹ XP_038958526

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	135,292,291 - 135,385,935 (-)	NCBI

RefSeq Acc Id:

XM_039102600 ⟹ XP_038958528

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	135,292,291 - 135,351,212 (-)	NCBI

RefSeq Acc Id:

XM_039102601 ⟹ XP_038958529

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	135,292,291 - 135,351,212 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012181	(Get FASTA)	NCBI Sequence Viewer
	NP_001029081	(Get FASTA)	NCBI Sequence Viewer
	XP_006232387	(Get FASTA)	NCBI Sequence Viewer
	XP_006232389	(Get FASTA)	NCBI Sequence Viewer
	XP_006232390	(Get FASTA)	NCBI Sequence Viewer
	XP_006232391	(Get FASTA)	NCBI Sequence Viewer
	XP_038958525	(Get FASTA)	NCBI Sequence Viewer
	XP_038958526	(Get FASTA)	NCBI Sequence Viewer
	XP_038958528	(Get FASTA)	NCBI Sequence Viewer
	XP_038958529	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83585	(Get FASTA)	NCBI Sequence Viewer
	AAH83598	(Get FASTA)	NCBI Sequence Viewer
	EDM14996	(Get FASTA)	NCBI Sequence Viewer
	EDM14997	(Get FASTA)	NCBI Sequence Viewer
	EDM14998	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001029081 ⟸ NM_001033909
- Peptide Label:	isoform 1
- UniProtKB:	Q5XIT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAVVGGGGSVLELSSNGVENQEGGDTVPEFPAVIVEPVPSARLEQGYAAQVLVYDDETYMMQ DVAEEQEVETENSETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPVEVFVPPCIST PEFIHAAMRPDVITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVSNGSP ELGVKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNK PDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCPEDLAAAADDKSL ERVSLSAESLLKAATAVRGGKNSSPMNCSRAEKGVTRVVNITSPAHDASSRCPTTTAPVSAAAA PRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGTPLITSTSPATASSPKVVIQTVPTVMPASAEN GDRITMQPAKIITIPATQLAQCQLQTKSNLTGSGSISLVGTPLAVRALTPVSIAHGTPVMRLSV PAQQASGQTPPRVISAVIKGPEVKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVSAPSAIA LPVTMKTEGLVTCEK hide sequence

RefSeq Acc Id:	NP_001012181 ⟸ NM_001012181
- Peptide Label:	isoform 2
- UniProtKB:	Q5XIS3 (UniProtKB/TrEMBL), Q5XIT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATSLHEGPTNQLDLLIRAVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPEFIHAAM RPDVITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVSNGSPELGVKKKA REGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETM GRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCPEDLAAAADDKSLERVSLSAE SLLKAATAVRGGKNSSPMNCSRAEKGVTRVVNITSPAHDASSRCPTTTAPVSAAAAPRTVRVAM QVPVVMTSLGQKISTVAVQSVNAGTPLITSTSPATASSPKVVIQTVPTVMPASAENGDRITMQP AKIITIPATQLAQCQLQTKSNLTGSGSISLVGTPLAVRALTPVSIAHGTPVMRLSVPAQQASGQ TPPRVISAVIKGPEVKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVSAPSAIALPVTMKTE GLVTCEK hide sequence

RefSeq Acc Id:	XP_006232387 ⟸ XM_006232325
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAVVGGGGSVLELSSNGVENQEGGDTVPEFPAVIVEPVPSARLEQGYAAQVLVYDDETYMMQ DVAEEQEVETENSETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPVEVFVPPCIST PEFIHAAMRPDVITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVSNGSP ELGVKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNK PDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCPEDLAAAADDKSL ERVSLSAESLLKAATAVRGGKNSSPMNCSRAEKGVTRVVNITSPAHDASSRCPTTTAPVSAAAA PRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGTPLITSTSPATASSPKVVIQTVPTVMPASAEN GDRITMQPAKIITIPATQLAQCQLQTKSNLTGSGSISLVGTPLAVRALTPVSIAHGTPVMRLSV PAQQASGQTPPRVISAVIKGPEVKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVSAPSAIA LPVTMKTEGLVTCEK hide sequence

RefSeq Acc Id:

XP_006232391 ⟸ XM_006232329

- Peptide Label:

isoform X5

- Sequence:

show sequence

MESPTCLRDSRSPEFIHAAMRPDVITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKP
KTQQSPVSNGSPELGVKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSK
AVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCP
EDLAAAADDKSLERVSLSAESLLKAATAVRGGKNSSPMNCSRAEKGVTRVVNITSPAHDASSRC
PTTTAPVSAAAAPRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGTPLITSTSPATASSPKVVIQ
TVPTVMPASAENGDRITMQPAKIITIPATQLAQCQLQTKSNLTGSGSISLVGTPLAVRALTPVS
IAHGTPVMRLSVPAQQASGQTPPRVISAVIKGPEVKSEAKKQEHDVKTLQLVEEKGADGNKTVT
HVVVVSAPSAIALPVTMKTEGLVTCEK

hide sequence

RefSeq Acc Id:

XP_006232390 ⟸ XM_006232328

- Peptide Label:

isoform X4

- Sequence:

show sequence

MESPTCLRDSRSPVEVFVPPCISTPEFIHAAMRPDVITETVVEVSTEESEPMDASPIPTSPDSH
EPMKKKKVGRKPKTQQSPVSNGSPELGVKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQ
REKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNI
VVIDDDKSETCPEDLAAAADDKSLERVSLSAESLLKAATAVRGGKNSSPMNCSRAEKGVTRVVN
ITSPAHDASSRCPTTTAPVSAAAAPRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGTPLITSTS
PATASSPKVVIQTVPTVMPASAENGDRITMQPAKIITIPATQLAQCQLQTKSNLTGSGSISLVG
TPLAVRALTPVSIAHGTPVMRLSVPAQQASGQTPPRVISAVIKGPEVKSEAKKQEHDVKTLQLV
EEKGADGNKTVTHVVVVSAPSAIALPVTMKTEGLVTCEK

hide sequence

RefSeq Acc Id:

XP_006232389 ⟸ XM_006232327

- Peptide Label:

isoform X3

- Sequence:

show sequence

MATSLHEGPTNQLDLLIRAVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPVEVFVPP
CISTPEFIHAAMRPDVITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVS
NGSPELGVKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGK
HKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCPEDLAAAAD
DKSLERVSLSAESLLKAATAVRGGKNSSPMNCSRAEKGVTRVVNITSPAHDASSRCPTTTAPVS
AAAAPRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGTPLITSTSPATASSPKVVIQTVPTVMPA
SAENGDRITMQPAKIITIPATQLAQCQLQTKSNLTGSGSISLVGTPLAVRALTPVSIAHGTPVM
RLSVPAQQASGQTPPRVISAVIKGPEVKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVSAP
SAIALPVTMKTEGLVTCEK

hide sequence

RefSeq Acc Id:

XP_008759214 ⟸ XM_008760992

- Peptide Label:

isoform X2

- Sequence:

show sequence

MASAVVGGGGSVLELSSNGVENQEGGDTVPEFPAVIVEPVPSARLEQGYAAQVLVYDDETYMMQ
DVAEEQEVETENSETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPEFIHAAMRPDV
ITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVSNGSPELGVKKKAREGK
GNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRAL
RYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCPEDLAAAADDKSLERVSLSAESLLK
AATAVRGGKNSSPMNCSRAEKGVTRVVNITSPAHDASSRCPTTTAPVSAAAAPRTVRVAMQVPV
VMTSLGQKISTVAVQSVNAGTPLITSTSPATASSPKVVIQTVPTVMPASAENGDRITMQPAKII
TIPATQLAQCQLQTKSNLTGSGSISLVGTPLAVRALTPVSIAHGTPVMRLSVPAQQASGQTPPR
VISAVIKGPEVKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVSAPSAIALPVTMKTEGLVT
CEK

hide sequence

RefSeq Acc Id:

ENSRNOP00000047984 ⟸ ENSRNOT00000047635

RefSeq Acc Id:

ENSRNOP00000015067 ⟸ ENSRNOT00000015067

RefSeq Acc Id:	XP_038958525 ⟸ XM_039102597
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958526 ⟸ XM_039102598
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038958529 ⟸ XM_039102601
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038958528 ⟸ XM_039102600
- Peptide Label:	isoform X6

Protein Domains

ETS

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310585	AgrOrtholog
Ensembl Genes	ENSRNOG00000010815	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000015067	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000047984	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015067	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000047635	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7131145	IMAGE-MGC_LOAD
	IMAGE:7132941	IMAGE-MGC_LOAD
InterPro	Ets	UniProtKB/TrEMBL
	TF_Elf-1_N	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	rno:361944	UniProtKB/TrEMBL
MGC_CLONE	MGC:94231	IMAGE-MGC_LOAD
	MGC:94337	IMAGE-MGC_LOAD
NCBI Gene	361944	ENTREZGENE
Pfam	Elf-1_N	UniProtKB/TrEMBL
	Ets	UniProtKB/TrEMBL
PhenoGen	Elf2	PhenoGen
PRINTS	ETSDOMAIN	UniProtKB/TrEMBL
PROSITE	ETS_DOMAIN_1	UniProtKB/TrEMBL
	ETS_DOMAIN_2	UniProtKB/TrEMBL
	ETS_DOMAIN_3	UniProtKB/TrEMBL
SMART	ETS	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	Q5XIS3	ENTREZGENE, UniProtKB/TrEMBL
	Q5XIT5	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	G3V7H5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-07	Elf2	E74 like ETS transcription factor 2	Elf2	E74-like factor 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Elf2	E74-like factor 2	Elf2_predicted	E74-like factor 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Elf2_predicted	E74-like factor 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD