Snx16 (sorting nexin 16) - Rat Genome Database

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Gene: Snx16 (sorting nexin 16) Rattus norvegicus
Analyze
Symbol: Snx16
Name: sorting nexin 16
RGD ID: 620295
Description: Predicted to enable identical protein binding activity and phosphatidylinositol binding activity. Involved in early endosome to late endosome transport. Predicted to be located in endosome membrane. Predicted to be active in early endosome and late endosome. Orthologous to human SNX16 (sorting nexin 16); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: sorting nexin-16
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8293,242,779 - 93,265,048 (+)NCBIGRCr8
mRatBN7.2291,335,896 - 91,357,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl291,336,092 - 91,357,619 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx297,826,571 - 97,847,916 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0295,947,552 - 95,968,901 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0291,004,427 - 91,025,772 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0293,518,796 - 93,541,056 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl293,518,806 - 93,540,328 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02113,278,384 - 113,299,936 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4293,274,839 - 93,296,194 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1293,219,800 - 93,241,151 (+)NCBI
Celera286,938,630 - 86,959,946 (+)NCBICelera
Cytogenetic Map2q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Evidence for a role of SNX16 in regulating traffic between the early and later endosomal compartments. Hanson BJ and Hong W, J Biol Chem 2003 Sep 5;278(36):34617-30. Epub 2003 Jun 17.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15292396   PMID:15489334  


Genomics

Comparative Map Data
Snx16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8293,242,779 - 93,265,048 (+)NCBIGRCr8
mRatBN7.2291,335,896 - 91,357,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl291,336,092 - 91,357,619 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx297,826,571 - 97,847,916 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0295,947,552 - 95,968,901 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0291,004,427 - 91,025,772 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0293,518,796 - 93,541,056 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl293,518,806 - 93,540,328 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02113,278,384 - 113,299,936 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4293,274,839 - 93,296,194 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1293,219,800 - 93,241,151 (+)NCBI
Celera286,938,630 - 86,959,946 (+)NCBICelera
Cytogenetic Map2q23NCBI
SNX16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38881,799,583 - 81,842,185 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl881,799,581 - 81,842,866 (-)EnsemblGRCh38hg38GRCh38
GRCh37882,711,818 - 82,754,420 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36882,874,373 - 82,916,990 (-)NCBINCBI36Build 36hg18NCBI36
Build 34882,874,374 - 82,916,990NCBI
Celera878,716,410 - 78,759,118 (-)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef878,201,792 - 78,244,561 (-)NCBIHuRef
CHM1_1882,763,394 - 82,806,114 (-)NCBICHM1_1
T2T-CHM13v2.0882,231,264 - 82,273,872 (-)NCBIT2T-CHM13v2.0
Snx16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39310,482,877 - 10,505,194 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl310,482,877 - 10,505,162 (-)EnsemblGRCm39 Ensembl
GRCm38310,417,817 - 10,440,131 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl310,417,817 - 10,440,102 (-)EnsemblGRCm38mm10GRCm38
MGSCv37310,417,817 - 10,440,124 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36310,400,679 - 10,422,619 (-)NCBIMGSCv36mm8
Celera310,453,576 - 10,475,883 (-)NCBICelera
Cytogenetic Map3A1NCBI
cM Map32.66NCBI
Snx16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955417159,312 - 209,183 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955417159,369 - 209,166 (-)NCBIChiLan1.0ChiLan1.0
SNX16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2797,538,303 - 97,585,166 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1873,167,643 - 73,212,150 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0878,324,407 - 78,367,143 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1879,944,729 - 79,987,430 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl879,944,729 - 79,987,430 (-)Ensemblpanpan1.1panPan2
SNX16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12928,882,768 - 28,922,713 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2928,884,426 - 28,920,797 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2929,163,565 - 29,203,367 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02929,017,001 - 29,056,816 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2929,018,415 - 29,056,840 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12929,086,302 - 29,126,084 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02929,100,026 - 29,140,012 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02929,457,213 - 29,497,012 (-)NCBIUU_Cfam_GSD_1.0
Snx16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530350,266,878 - 50,311,384 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366562,457,409 - 2,502,847 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366562,457,418 - 2,500,281 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl454,801,394 - 54,837,981 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1454,801,363 - 54,837,986 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2460,038,128 - 60,074,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1877,203,509 - 77,246,553 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl877,203,521 - 77,246,256 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603963,949,741 - 63,992,500 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247449,653,868 - 9,699,845 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247449,653,844 - 9,699,318 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:83
Interacting mature miRNAs:114
Transcripts:ENSRNOT00000050987
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)261556902106556902Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)261051883104684275Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)282947902127947902Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)284056790132859658Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)282214549127214549Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)261051541105724065Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)278269809104744824Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)241801363104744824Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
2317058Aia13Adjuvant induced arthritis QTL 132.9joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)278269809123269809Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)244537979112567334Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)261051541105724065Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)25126685996266859Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)260861391105861391Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)261051541143746880Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000050987   ⟹   ENSRNOP00000041690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl291,336,121 - 91,357,619 (+)Ensembl
Rnor_6.0 Ensembl293,518,806 - 93,540,328 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083909   ⟹   ENSRNOP00000068566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl291,336,211 - 91,357,614 (+)Ensembl
Rnor_6.0 Ensembl293,520,734 - 93,539,375 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096600   ⟹   ENSRNOP00000093980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl291,336,092 - 91,357,610 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108035   ⟹   ENSRNOP00000088326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl291,338,017 - 91,357,619 (+)Ensembl
RefSeq Acc Id: NM_022289   ⟹   NP_071625
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8293,243,522 - 93,264,869 (+)NCBI
mRatBN7.2291,336,092 - 91,357,443 (+)NCBI
Rnor_6.0293,518,809 - 93,540,156 (+)NCBI
Rnor_5.02113,278,384 - 113,299,936 (+)NCBI
RGSC_v3.4293,274,839 - 93,296,194 (+)RGD
Celera286,938,630 - 86,959,946 (+)RGD
Sequence:
RefSeq Acc Id: XM_006232135   ⟹   XP_006232197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8293,242,779 - 93,265,048 (+)NCBI
mRatBN7.2291,336,047 - 91,357,622 (+)NCBI
Rnor_6.0293,518,796 - 93,541,056 (+)NCBI
Rnor_5.02113,278,384 - 113,299,936 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103035   ⟹   XP_038958963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8293,243,493 - 93,262,273 (+)NCBI
mRatBN7.2291,335,896 - 91,354,845 (+)NCBI
RefSeq Acc Id: NP_071625   ⟸   NM_022289
- UniProtKB: Q6P7R2 (UniProtKB/Swiss-Prot),   P57769 (UniProtKB/Swiss-Prot),   A6IH36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232197   ⟸   XM_006232135
- Peptide Label: isoform X1
- UniProtKB: Q6P7R2 (UniProtKB/Swiss-Prot),   P57769 (UniProtKB/Swiss-Prot),   A0A8L2QN20 (UniProtKB/TrEMBL),   A6IH36 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068566   ⟸   ENSRNOT00000083909
Ensembl Acc Id: ENSRNOP00000041690   ⟸   ENSRNOT00000050987
RefSeq Acc Id: XP_038958963   ⟸   XM_039103035
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000093980   ⟸   ENSRNOT00000096600
Ensembl Acc Id: ENSRNOP00000088326   ⟸   ENSRNOT00000108035
Protein Domains
PX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P57769-F1-model_v2 AlphaFold P57769 1-344 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691231
Promoter ID:EPDNEW_R1754
Type:multiple initiation site
Name:Snx16_1
Description:sorting nexin 16
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0293,518,809 - 93,518,869EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620295 AgrOrtholog
BioCyc Gene G2FUF-53765 BioCyc
Ensembl Genes ENSRNOG00000009953 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055001735 UniProtKB/Swiss-Prot
  ENSRNOG00060001917 UniProtKB/Swiss-Prot
  ENSRNOG00065013287 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000050987.5 UniProtKB/TrEMBL
  ENSRNOT00000083909 UniProtKB/TrEMBL
  ENSRNOT00000083909.2 UniProtKB/Swiss-Prot
  ENSRNOT00000096600.1 UniProtKB/TrEMBL
  ENSRNOT00000108035.1 UniProtKB/TrEMBL
  ENSRNOT00055002800 UniProtKB/Swiss-Prot
  ENSRNOT00060002966 UniProtKB/Swiss-Prot
  ENSRNOT00065021820 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.1520.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6890629 IMAGE-MGC_LOAD
InterPro Phox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNX16_PX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SortingNexin/PXDomain-PKLike UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64088 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72840 IMAGE-MGC_LOAD
NCBI Gene 64088 ENTREZGENE
PANTHER PX SERINE/THREONINE KINASE PXK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SORTING NEXIN-16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snx16 PhenoGen
PROSITE PS50195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009953 RatGTEx
  ENSRNOG00055001735 RatGTEx
  ENSRNOG00060001917 RatGTEx
  ENSRNOG00065013287 RatGTEx
SMART SM00312 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF64268 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JT47_RAT UniProtKB/TrEMBL
  A0A8I6A4W4_RAT UniProtKB/TrEMBL
  A0A8I6AL47_RAT UniProtKB/TrEMBL
  A0A8L2QN20 ENTREZGENE, UniProtKB/TrEMBL
  A6IH36 ENTREZGENE, UniProtKB/TrEMBL
  P57769 ENTREZGENE
  Q6P7R2 ENTREZGENE
  SNX16_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q6P7R2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Snx16  sorting nexin 16      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Snx16  sorting nexin 16      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains a PX domain, a coiled-coil domain and a C-terminal region 737670
gene_physical_interaction interacts with the phospholipid phosphatidylinositol 3-phosphate 737670