Symbol:
Snx16
Name:
sorting nexin 16
RGD ID:
620295
Description:
Predicted to enable identical protein binding activity and phosphatidylinositol binding activity. Involved in early endosome to late endosome transport. Predicted to be located in endosome membrane. Predicted to be active in early endosome and late endosome. Orthologous to human SNX16 (sorting nexin 16); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
sorting nexin-16
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
SNX16 (sorting nexin 16) HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):
Snx16 (sorting nexin 16) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Snx16 (sorting nexin 16) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
SNX16 (sorting nexin 16) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
SNX16 (sorting nexin 16) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Snx16 (sorting nexin 16) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
SNX16 (sorting nexin 16) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
SNX16 (sorting nexin 16) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Snx16 (sorting nexin 16) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
SNX16 (sorting nexin 16)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Snx16 (sorting nexin 16)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
snx16 (sorting nexin 16)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
Snx16
Alliance
DIOPT (Ensembl Compara|OrthoFinder|OrthoInspector|PANTHER|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
snx16
Alliance
DIOPT (Ensembl Compara|OMA|OrthoFinder|PANTHER|PhylomeDB)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 93,242,779 - 93,265,048 (+) NCBI GRCr8 mRatBN7.2 2 91,335,896 - 91,357,622 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 91,336,092 - 91,357,619 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 2 97,826,571 - 97,847,916 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 95,947,552 - 95,968,901 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 91,004,427 - 91,025,772 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 93,518,796 - 93,541,056 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 93,518,806 - 93,540,328 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 113,278,384 - 113,299,936 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 93,274,839 - 93,296,194 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 93,219,800 - 93,241,151 (+) NCBI Celera 2 86,938,630 - 86,959,946 (+) NCBI Celera Cytogenetic Map 2 q23 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Snx16 Rat 1,2-dimethylhydrazine decreases expression ISO RGD:733908 6480464 1,2-Dimethylhydrazine results in decreased expression of SNX16 mRNA CTD PMID:22206623 Snx16 Rat 14-Deoxy-11,12-didehydroandrographolide increases expression ISO RGD:733907 6480464 14-deoxy-11,12-didehydroandrographolide results in increased expression of SNX16 mRNA CTD PMID:22101062 Snx16 Rat 17alpha-ethynylestradiol multiple interactions ISO RGD:733908 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SNX16 mRNA CTD PMID:17942748 Snx16 Rat 17alpha-ethynylestradiol affects expression ISO RGD:733908 6480464 Ethinyl Estradiol affects the expression of SNX16 mRNA CTD PMID:17555576 Snx16 Rat 2,2',4,4',5,5'-hexachlorobiphenyl decreases expression ISO RGD:733907 6480464 2,4,5,2',4',5'-hexachlorobiphenyl results in decreased expression of SNX16 mRNA CTD PMID:23146750 Snx16 Rat 2,3,7,8-tetrachlorodibenzodioxine multiple interactions ISO RGD:733908 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SNX16 mRNA CTD PMID:17942748 Snx16 Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression EXP 6480464 Tetrachlorodibenzodioxin results in increased expression of SNX16 mRNA CTD PMID:33387578 Snx16 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO RGD:733908 6480464 Tetrachlorodibenzodioxin affects the expression of SNX16 mRNA CTD PMID:21570461 Snx16 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO RGD:733907 6480464 Tetrachlorodibenzodioxin affects the expression of SNX16 mRNA CTD PMID:22298810 Snx16 Rat 2,3,7,8-Tetrachlorodibenzofuran decreases expression EXP 6480464 2,3,7,8-tetrachlorodibenzofuran results in decreased expression of SNX16 mRNA CTD PMID:32109520 Snx16 Rat 2,4-dinitrotoluene affects expression EXP 6480464 2,4-dinitrotoluene affects the expression of SNX16 mRNA CTD PMID:21346803 Snx16 Rat 2-ethoxyethanol increases expression EXP 6480464 2-ethoxyethanol results in increased expression of SNX16 mRNA CTD PMID:19643169 Snx16 Rat 2-methoxyethanol increases expression EXP 6480464 methyl cellosolve results in increased expression of SNX16 mRNA CTD PMID:19643169 Snx16 Rat 3,4-methylenedioxymethamphetamine decreases expression EXP 6480464 N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of SNX16 mRNA CTD PMID:30071829 Snx16 Rat 4,4'-diaminodiphenylmethane decreases expression ISO RGD:733908 6480464 4,4'-diaminodiphenylmethane results in decreased expression of SNX16 mRNA CTD PMID:18648102 Snx16 Rat 6-propyl-2-thiouracil decreases expression EXP 6480464 Propylthiouracil results in decreased expression of SNX16 mRNA CTD PMID:30047161 Snx16 Rat acrylamide increases expression ISO RGD:733907 6480464 Acrylamide results in increased expression of SNX16 mRNA CTD PMID:32763439 Snx16 Rat aflatoxin B1 affects expression ISO RGD:733907 6480464 Aflatoxin B1 affects the expression of SNX16 protein CTD PMID:20106945 Snx16 Rat aflatoxin B1 increases expression ISO RGD:733908 6480464 Aflatoxin B1 results in increased expression of SNX16 mRNA CTD PMID:19770486 Snx16 Rat aflatoxin M1 decreases expression ISO RGD:733907 6480464 Aflatoxin M1 results in decreased expression of SNX16 mRNA CTD PMID:30928695 Snx16 Rat amitrole decreases expression EXP 6480464 Amitrole results in decreased expression of SNX16 mRNA CTD PMID:30047161 Snx16 Rat ammonium chloride affects expression EXP 6480464 Ammonium Chloride affects the expression of SNX16 mRNA CTD PMID:16483693 Snx16 Rat arsane multiple interactions ISO RGD:733907 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ... CTD PMID:39836092 Snx16 Rat arsenic atom multiple interactions ISO RGD:733907 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ... CTD PMID:39836092 Snx16 Rat atrazine decreases expression ISO RGD:733907 6480464 Atrazine results in decreased expression of SNX16 mRNA CTD PMID:22378314 Snx16 Rat benzo[a]pyrene increases expression ISO RGD:733907 6480464 Benzo(a)pyrene results in increased expression of SNX16 mRNA CTD PMID:20064835 Snx16 Rat benzo[a]pyrene affects methylation ISO RGD:733907 6480464 Benzo(a)pyrene affects the methylation of SNX16 promoter CTD PMID:30157460 Snx16 Rat benzo[a]pyrene increases methylation ISO RGD:733907 6480464 Benzo(a)pyrene results in increased methylation of SNX16 3' UTR CTD PMID:27901495 Snx16 Rat bisphenol A decreases expression ISO RGD:733907 6480464 bisphenol A results in decreased expression of SNX16 mRNA CTD PMID:23146750 Snx16 Rat bisphenol A increases expression ISO RGD:733908 6480464 bisphenol A results in increased expression of SNX16 mRNA CTD PMID:33221593 Snx16 Rat bisphenol F increases expression ISO RGD:733908 6480464 bisphenol F results in increased expression of SNX16 mRNA CTD PMID:38685157 Snx16 Rat clotrimazole decreases expression EXP 6480464 Clotrimazole results in decreased expression of SNX16 mRNA CTD PMID:30047161 Snx16 Rat copper atom multiple interactions ISO RGD:733907 6480464 [NSC 689534 binds to Copper] which results in increased expression of SNX16 mRNA CTD PMID:20971185 Snx16 Rat copper(0) multiple interactions ISO RGD:733907 6480464 [NSC 689534 binds to Copper] which results in increased expression of SNX16 mRNA CTD PMID:20971185 Snx16 Rat copper(II) sulfate increases expression ISO RGD:733907 6480464 Copper Sulfate results in increased expression of SNX16 mRNA CTD PMID:19549813 Snx16 Rat cyclosporin A increases expression ISO RGD:733907 6480464 Cyclosporine results in increased expression of SNX16 mRNA CTD PMID:20106945|PMID:25562108 Snx16 Rat decabromodiphenyl ether increases expression EXP 6480464 decabromobiphenyl ether results in increased expression of SNX16 mRNA CTD PMID:23640034 Snx16 Rat Dibutyl phosphate affects expression ISO RGD:733907 6480464 di-n-butylphosphoric acid affects the expression of SNX16 mRNA CTD PMID:37042841 Snx16 Rat dorsomorphin multiple interactions ISO RGD:733907 6480464 [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Snx16 Rat ethanol affects splicing ISO RGD:733908 6480464 Ethanol affects the splicing of SNX16 mRNA CTD PMID:30319688 Snx16 Rat ethanol increases expression ISO RGD:733908 6480464 Ethanol results in increased expression of SNX16 mRNA CTD PMID:30319688 Snx16 Rat ethyl methanesulfonate increases expression ISO RGD:733907 6480464 Ethyl Methanesulfonate results in increased expression of SNX16 mRNA CTD PMID:23649840 Snx16 Rat formaldehyde increases expression ISO RGD:733907 6480464 Formaldehyde results in increased expression of SNX16 mRNA CTD PMID:23649840 Snx16 Rat FR900359 increases phosphorylation ISO RGD:733907 6480464 FR900359 results in increased phosphorylation of SNX16 protein CTD PMID:37730182 Snx16 Rat gentamycin increases expression EXP 6480464 Gentamicins results in increased expression of SNX16 mRNA CTD PMID:33387578 Snx16 Rat ketamine decreases expression EXP 6480464 Ketamine results in decreased expression of SNX16 mRNA CTD PMID:20080153 Snx16 Rat leflunomide increases expression ISO RGD:733907 6480464 leflunomide results in increased expression of SNX16 mRNA CTD PMID:28988120 Snx16 Rat manganese atom multiple interactions ISO RGD:733907 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ... CTD PMID:39836092 Snx16 Rat manganese(0) multiple interactions ISO RGD:733907 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ... CTD PMID:39836092 Snx16 Rat manganese(II) chloride multiple interactions ISO RGD:733907 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ... CTD PMID:39836092 Snx16 Rat methimazole decreases expression EXP 6480464 Methimazole results in decreased expression of SNX16 mRNA CTD PMID:30047161 Snx16 Rat methyl methanesulfonate increases expression ISO RGD:733907 6480464 Methyl Methanesulfonate results in increased expression of SNX16 mRNA CTD PMID:23649840 Snx16 Rat N-acetyl-1,4-benzoquinone imine affects response to substance ISO RGD:733907 6480464 SNX16 gene SNP affects the susceptibility to N-acetyl-4-benzoquinoneimine CTD PMID:21177773 Snx16 Rat perfluorooctane-1-sulfonic acid decreases expression ISO RGD:733907 6480464 perfluorooctane sulfonic acid results in decreased expression of SNX16 mRNA CTD PMID:27153767 Snx16 Rat phenobarbital increases expression ISO RGD:733908 6480464 Phenobarbital results in increased expression of SNX16 mRNA CTD PMID:19482888 Snx16 Rat phenobarbital affects expression ISO RGD:733908 6480464 Phenobarbital affects the expression of SNX16 mRNA CTD PMID:23091169 Snx16 Rat phenobarbital affects expression ISO RGD:733907 6480464 Phenobarbital affects the expression of SNX16 mRNA CTD PMID:19159669 Snx16 Rat phenobarbital multiple interactions ISO RGD:733908 6480464 NR1I3 protein affects the reaction [Phenobarbital results in increased expression of SNX16 mRNA] CTD PMID:19482888 Snx16 Rat SB 431542 multiple interactions ISO RGD:733907 6480464 [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Snx16 Rat silver atom increases expression ISO RGD:733907 6480464 Silver results in increased expression of SNX16 mRNA CTD PMID:26014281 Snx16 Rat silver(0) increases expression ISO RGD:733907 6480464 Silver results in increased expression of SNX16 mRNA CTD PMID:26014281 Snx16 Rat sodium arsenite increases expression ISO RGD:733907 6480464 sodium arsenite results in increased expression of SNX16 mRNA CTD PMID:38568856 Snx16 Rat sodium arsenite multiple interactions ISO RGD:733907 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ... CTD PMID:39836092 Snx16 Rat sulfadimethoxine decreases expression EXP 6480464 Sulfadimethoxine results in decreased expression of SNX16 mRNA CTD PMID:30047161 Snx16 Rat tamoxifen affects expression ISO RGD:733908 6480464 Tamoxifen affects the expression of SNX16 mRNA CTD PMID:17555576 Snx16 Rat tetrachloromethane increases expression ISO RGD:733908 6480464 Carbon Tetrachloride results in increased expression of SNX16 mRNA CTD PMID:27339419|PMID:31919559 Snx16 Rat tetrachloromethane increases expression EXP 6480464 Carbon Tetrachloride results in increased expression of SNX16 mRNA CTD PMID:31150632 Snx16 Rat thalidomide increases expression ISO RGD:733907 6480464 Thalidomide analog results in increased expression of SNX16 mRNA CTD PMID:20525221 Snx16 Rat thioacetamide increases expression EXP 6480464 Thioacetamide results in increased expression of SNX16 mRNA CTD PMID:23411599|PMID:34492290 Snx16 Rat trichostatin A decreases expression ISO RGD:733907 6480464 trichostatin A results in decreased expression of SNX16 mRNA CTD PMID:26272509 Snx16 Rat trichostatin A multiple interactions ISO RGD:733907 6480464 [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Snx16 Rat triptonide affects expression ISO RGD:733908 6480464 triptonide affects the expression of SNX16 mRNA CTD PMID:33045310 Snx16 Rat troglitazone decreases expression ISO RGD:733908 6480464 troglitazone results in decreased expression of SNX16 mRNA CTD PMID:28973697 Snx16 Rat urethane increases expression ISO RGD:733907 6480464 Urethane results in increased expression of SNX16 mRNA CTD PMID:28818685 Snx16 Rat valproic acid decreases methylation ISO RGD:733907 6480464 Valproic Acid results in decreased methylation of SNX16 gene CTD PMID:29154799 Snx16 Rat valproic acid increases expression ISO RGD:733907 6480464 Valproic Acid results in increased expression of SNX16 mRNA CTD PMID:24935251|PMID:29154799 Snx16 Rat vinclozolin decreases expression EXP 6480464 vinclozolin results in decreased expression of SNX16 mRNA CTD PMID:20566332
1,2-dimethylhydrazine (ISO) 14-Deoxy-11,12-didehydroandrographolide (ISO) 17alpha-ethynylestradiol (ISO) 2,2',4,4',5,5'-hexachlorobiphenyl (ISO) 2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO) 2,3,7,8-Tetrachlorodibenzofuran (EXP) 2,4-dinitrotoluene (EXP) 2-ethoxyethanol (EXP) 2-methoxyethanol (EXP) 3,4-methylenedioxymethamphetamine (EXP) 4,4'-diaminodiphenylmethane (ISO) 6-propyl-2-thiouracil (EXP) acrylamide (ISO) aflatoxin B1 (ISO) aflatoxin M1 (ISO) amitrole (EXP) ammonium chloride (EXP) arsane (ISO) arsenic atom (ISO) atrazine (ISO) benzo[a]pyrene (ISO) bisphenol A (ISO) bisphenol F (ISO) clotrimazole (EXP) copper atom (ISO) copper(0) (ISO) copper(II) sulfate (ISO) cyclosporin A (ISO) decabromodiphenyl ether (EXP) Dibutyl phosphate (ISO) dorsomorphin (ISO) ethanol (ISO) ethyl methanesulfonate (ISO) formaldehyde (ISO) FR900359 (ISO) gentamycin (EXP) ketamine (EXP) leflunomide (ISO) manganese atom (ISO) manganese(0) (ISO) manganese(II) chloride (ISO) methimazole (EXP) methyl methanesulfonate (ISO) N-acetyl-1,4-benzoquinone imine (ISO) perfluorooctane-1-sulfonic acid (ISO) phenobarbital (ISO) SB 431542 (ISO) silver atom (ISO) silver(0) (ISO) sodium arsenite (ISO) sulfadimethoxine (EXP) tamoxifen (ISO) tetrachloromethane (EXP,ISO) thalidomide (ISO) thioacetamide (EXP) trichostatin A (ISO) triptonide (ISO) troglitazone (ISO) urethane (ISO) valproic acid (ISO) vinclozolin (EXP)
Snx16 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 93,242,779 - 93,265,048 (+) NCBI GRCr8 mRatBN7.2 2 91,335,896 - 91,357,622 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 91,336,092 - 91,357,619 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 2 97,826,571 - 97,847,916 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 95,947,552 - 95,968,901 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 91,004,427 - 91,025,772 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 93,518,796 - 93,541,056 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 93,518,806 - 93,540,328 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 113,278,384 - 113,299,936 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 93,274,839 - 93,296,194 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 93,219,800 - 93,241,151 (+) NCBI Celera 2 86,938,630 - 86,959,946 (+) NCBI Celera Cytogenetic Map 2 q23 NCBI
SNX16 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 8 81,799,583 - 81,842,185 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 8 81,799,581 - 81,842,866 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 8 82,711,818 - 82,754,420 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 8 82,874,373 - 82,916,990 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 8 82,874,374 - 82,916,990 NCBI Celera 8 78,716,410 - 78,759,118 (-) NCBI Celera Cytogenetic Map 8 q21.13 NCBI HuRef 8 78,201,792 - 78,244,561 (-) NCBI HuRef CHM1_1 8 82,763,394 - 82,806,114 (-) NCBI CHM1_1 T2T-CHM13v2.0 8 82,231,264 - 82,273,872 (-) NCBI T2T-CHM13v2.0
Snx16 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 3 10,482,877 - 10,505,194 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 3 10,482,877 - 10,505,162 (-) Ensembl GRCm39 Ensembl GRCm38 3 10,417,817 - 10,440,131 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 3 10,417,817 - 10,440,102 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 3 10,417,817 - 10,440,124 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 3 10,400,679 - 10,422,619 (-) NCBI MGSCv36 mm8 Celera 3 10,453,576 - 10,475,883 (-) NCBI Celera Cytogenetic Map 3 A1 NCBI cM Map 3 2.66 NCBI
Snx16 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955417 159,312 - 209,183 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955417 159,369 - 209,166 (-) NCBI ChiLan1.0 ChiLan1.0
SNX16 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 7 97,538,303 - 97,585,166 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 8 73,167,643 - 73,212,150 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 8 78,324,407 - 78,367,143 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 8 79,944,729 - 79,987,430 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 8 79,944,729 - 79,987,430 (-) Ensembl panpan1.1 panPan2
SNX16 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 29 28,882,768 - 28,922,713 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 29 28,884,426 - 28,920,797 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 29 29,163,565 - 29,203,367 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 29 29,017,001 - 29,056,816 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 29 29,018,415 - 29,056,840 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 29 29,086,302 - 29,126,084 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 29 29,100,026 - 29,140,012 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 29 29,457,213 - 29,497,012 (-) NCBI UU_Cfam_GSD_1.0
Snx16 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405303 50,266,878 - 50,311,384 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936656 2,457,409 - 2,502,847 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936656 2,457,418 - 2,500,281 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SNX16 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 4 54,801,394 - 54,837,981 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 4 54,801,363 - 54,837,986 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 4 60,038,128 - 60,074,745 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SNX16 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 8 77,203,509 - 77,246,553 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 8 77,203,521 - 77,246,256 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666039 63,949,741 - 63,992,500 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Snx16
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Predicted Target Of
Count of predictions: 132 Count of miRNA genes: 83 Interacting mature miRNAs: 114 Transcripts: ENSRNOT00000050987 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
1578777 Stresp15 Stress response QTL 15 2 0.05 blood aldosterone amount (VT:0005346) plasma aldosterone level (CMO:0000551) 2 59846005 104846005 Rat 2293671 Bss44 Bone structure and strength QTL 44 10.97 0.0001 lumbar vertebra morphology trait (VT:0010494) lumbar vertebra cortical cross-sectional area (CMO:0001690) 2 43162366 148478373 Rat 1298074 Bp164 Blood pressure QTL 164 0.003 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 42804607 202447032 Rat 1598865 Bp296 Blood pressure QTL 296 2.1 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 81018907 126018907 Rat 1354648 Bp239 Blood pressure QTL 239 0.001 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 66118463 226797303 Rat 1578772 Stresp14 Stress response QTL 14 5 0.001 blood renin amount (VT:0003349) plasma renin activity level (CMO:0000116) 2 82345893 130923501 Rat 1354649 Kidm17 Kidney mass QTL 17 2.9 kidney mass (VT:0002707) calculated kidney weight (CMO:0000160) 2 81754530 227146641 Rat 2293676 Bmd19 Bone mineral density QTL 19 10.7 0.0001 femur mineral mass (VT:0010011) total volumetric bone mineral density (CMO:0001728) 2 43162366 111362592 Rat 10755499 Bp389 Blood pressure QTL 389 2.61 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 2 18960362 228801039 Rat 2293682 Bmd24 Bone mineral density QTL 24 8.9 0.0001 femur mineral mass (VT:0010011) compact volumetric bone mineral density (CMO:0001730) 2 43162366 111362592 Rat 152025242 Bw191 Body weight QTL 191 3.62 body mass (VT:0001259) 2 38573329 122609194 Rat 631198 Cm22 Cardiac mass QTL 22 4.3 0.0008 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 2 76539322 150540526 Rat 1302794 Stl27 Serum triglyceride level QTL 27 4.4 0.0001 blood triglyceride amount (VT:0002644) plasma triglyceride level (CMO:0000548) 2 25413423 143657569 Rat 61465 Bp13 Blood pressure QTL 13 3.3 blood pressure trait (VT:0000183) systolic blood pressure (CMO:0000004) 2 76539322 102785628 Rat 1581569 Uae32 Urinary albumin excretion QTL 32 0.0001 urine protein amount (VT:0005160) urine albumin excretion rate (CMO:0000757) 2 78665619 219826953 Rat 61467 Bp14 Blood pressure QTL 14 2.2 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 43154682 202446871 Rat 70174 BpQTLCluster2 Blood pressure QTL cluster 2 4.24 arterial blood pressure trait (VT:2000000) absolute change in mean arterial blood pressure (CMO:0000533) 2 40067944 102785628 Rat 1358901 Cm38 Cardiac mass QTL 38 2 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 2 25413423 157142209 Rat 1331760 Bp206 Blood pressure QTL 206 3.62454 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 56043031 202447032 Rat 2300165 Bmd49 Bone mineral density QTL 49 4.8 0.0001 lumbar vertebra mineral mass (VT:0010511) bone mineral density (CMO:0001226) 2 88862519 133862519 Rat 1358899 Kidm23 Kidney mass QTL 23 3.88 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 2 25413423 157142209 Rat 1358908 Bw49 Body weight QTL 49 3.36 body mass (VT:0001259) body weight (CMO:0000012) 2 25413652 157142078 Rat 5684990 Bmd82 Bone mineral density QTL 82 2.8 tibia mineral mass (VT:1000283) bone mineral content (CMO:0001554) 2 59324377 103795077 Rat 2300170 Bmd45 Bone mineral density QTL 45 12.1 0.0001 lumbar vertebra mineral mass (VT:0010511) volumetric bone mineral density (CMO:0001553) 2 88862519 133862519 Rat 1358910 Kidm27 Kidney mass QTL 27 5.77 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 2 25413423 157142209 Rat 61355 Bp36 Blood pressure QTL 36 2.9 blood pressure trait (VT:0000183) systolic blood pressure (CMO:0000004) 2 5873687 102844969 Rat 1358911 Kidm28 Kidney mass QTL 28 5.42 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 2 25413423 157142209 Rat 1358904 Cm39 Cardiac mass QTL 39 2.26 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 2 25413423 157142209 Rat 7411551 Bw131 Body weight QTL 131 29.6 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 2 67942638 112942638 Rat 1359034 Bp274 Blood pressure QTL 274 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 2 74786664 94359546 Rat 1358887 Bw50 Body weight QTL 50 2.39 body mass (VT:0001259) body weight (CMO:0000012) 2 25413652 157142078 Rat 1298080 Bp163 Blood pressure QTL 163 0.02 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 66118275 202447032 Rat 8662832 Vetf7 Vascular elastic tissue fragility QTL 7 3.5 aorta elastin amount (VT:0003905) aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002) 2 81689826 221035911 Rat 1298085 Bp165 Blood pressure QTL 165 0.0006 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 42804607 202447032 Rat 2290453 Scl55 Serum cholesterol level QTL 55 2.83 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 2 26917817 136917119 Rat 2299162 Iddm32 Insulin dependent diabetes mellitus QTL 32 2.36 blood glucose amount (VT:0000188) age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140) 2 78665616 143657569 Rat 1358894 Kidm24 Kidney mass QTL 24 4.03 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 2 25413423 157142209 Rat 2300185 Bmd46 Bone mineral density QTL 46 8.4 0.0001 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 2 88862519 133862519 Rat 724534 Uae6 Urinary albumin excretion QTL 6 10 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 2 78665619 249053267 Rat 61374 Edpm2 Estrogen-dependent pituitary mass QTL 2 4.42 0.86 pituitary gland mass (VT:0010496) pituitary gland wet weight (CMO:0000853) 2 76539322 202447032 Rat 631500 Bp99 Blood pressure QTL 99 2.5 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 59324719 102755241 Rat 61392 Bp6 Blood pressure QTL 6 7 arterial blood pressure trait (VT:2000000) pulse pressure (CMO:0000292) 2 80270434 125270434 Rat 1358917 Cm42 Cardiac mass QTL 42 2.82 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 2 25413423 203928301 Rat 5684996 Bmd85 Bone mineral density QTL 85 4.7 0.024 tibia mineral mass (VT:1000283) bone mineral density (CMO:0001226) 2 59324377 103795077 Rat 1358913 Cm41 Cardiac mass QTL 41 2.73 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 2 25413423 203928301 Rat 2293835 Kiddil5 Kidney dilation QTL 5 3.8 kidney pelvis morphology trait (VT:0004194) hydronephrosis severity score (CMO:0001208) 2 42804607 157142209 Rat 1558653 Prcr1 Prostate cancer resistance QTL 1 5 prostate integrity trait (VT:0010571) area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899) 2 72532993 157142209 Rat 1354622 Kidm16 Kidney mass QTL 16 3 kidney mass (VT:0002707) left kidney wet weight (CMO:0000083) 2 81754530 222436696 Rat 631266 Bp132 Blood pressure QTL 132 0.0005 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 46123260 202447032 Rat 7207808 Bmd89 Bone mineral density QTL 89 4.1 femur strength trait (VT:0010010) femoral neck ultimate force (CMO:0001703) 2 88862519 133862519 Rat 1558648 Smcn1 Smooth muscle cell number QTL 1 0.039 blood vessel smooth muscle cell quantity (VT:0010525) aorta smooth muscle cell count per unit vessel length (CMO:0001646) 2 59134147 127460910 Rat 2293843 Kiddil6 Kidney dilation QTL 6 3.1 kidney pelvis morphology trait (VT:0004194) hydronephrosis severity score (CMO:0001208) 2 42804607 182042367 Rat 2306903 Bp336 Blood pressure QTL 336 0.01 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 64366971 109366971 Rat 152025206 Hrtrt23 Heart rate QTL 23 5.98 heart pumping trait (VT:2000009) 2 28484589 169504100 Rat 1354605 Rf48 Renal function QTL 48 2.9 blood creatinine amount (VT:0005328) plasma creatinine level (CMO:0000537) 2 74786664 206665859 Rat 152025204 Hrtrt22 Heart rate QTL 22 5.6 heart pumping trait (VT:2000009) 2 28484589 169504100 Rat 1354601 Slep1 Serum leptin concentration QTL 1 5.39 blood leptin amount (VT:0005667) serum leptin level (CMO:0000780) 2 43171017 184114403 Rat 61438 Cia7 Collagen induced arthritis QTL 7 4.6 0.0001 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 2 59324377 141596857 Rat 1354603 Bp243 Blood pressure QTL 243 3.9 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 2 26917817 127469484 Rat
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alimentary part of gastrointestinal system
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Ensembl Acc Id:
ENSRNOT00000050987 ⟹ ENSRNOP00000041690
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 2 91,336,121 - 91,357,619 (+) Ensembl Rnor_6.0 Ensembl 2 93,518,806 - 93,540,328 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000083909 ⟹ ENSRNOP00000068566
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 2 91,336,211 - 91,357,614 (+) Ensembl Rnor_6.0 Ensembl 2 93,520,734 - 93,539,375 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000096600 ⟹ ENSRNOP00000093980
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 2 91,336,092 - 91,357,610 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000108035 ⟹ ENSRNOP00000088326
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 2 91,338,017 - 91,357,619 (+) Ensembl
RefSeq Acc Id:
NM_022289 ⟹ NP_071625
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 2 93,243,522 - 93,264,869 (+) NCBI mRatBN7.2 2 91,336,092 - 91,357,443 (+) NCBI Rnor_6.0 2 93,518,809 - 93,540,156 (+) NCBI Rnor_5.0 2 113,278,384 - 113,299,936 (+) NCBI RGSC_v3.4 2 93,274,839 - 93,296,194 (+) RGD Celera 2 86,938,630 - 86,959,946 (+) RGD
Sequence:
ACTTCAGGCCGTCCCTTCCCTCAGGTACGCGGGAACCTGCCTGGGTGGCTGTGCCAAGGCACAGAGTGGCTCGTCTCCAGCGGAGGGTCACATGAGGAGTCCGAGTGTCCGGGCAGGACGGGACCAGC
hide sequence
RefSeq Acc Id:
XM_006232135 ⟹ XP_006232197
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 2 93,242,779 - 93,265,048 (+) NCBI mRatBN7.2 2 91,336,047 - 91,357,622 (+) NCBI Rnor_6.0 2 93,518,796 - 93,541,056 (+) NCBI Rnor_5.0 2 113,278,384 - 113,299,936 (+) NCBI
Sequence:
ATACCCCCCTCCCACTTCAGGCCGTCCCTTCCCTCAGGTACGCGGGAACCTGCCTGGGTGGCTGTGCCAAGGCACAGAGTGGCTCGTCTCCAGCGGAGGGTCACGTGAGGAGTCCGAGTGTCCGGGCA
hide sequence
RefSeq Acc Id:
XM_039103035 ⟹ XP_038958963
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 2 93,243,493 - 93,262,273 (+) NCBI mRatBN7.2 2 91,335,896 - 91,354,845 (+) NCBI
RefSeq Acc Id:
NP_071625 ⟸ NM_022289
- UniProtKB:
Q6P7R2 (UniProtKB/Swiss-Prot), P57769 (UniProtKB/Swiss-Prot), A6IH36 (UniProtKB/TrEMBL)
- Sequence:
MATPYVPVPMPIGNSASSFTNNRNQRSSSFGSVSTSSNSSKGQLEDSSVGTCKHTNVQDQMDSASSVCGSPLIRTKFTGTDSSIEYSARPRDTEEQHPDALNWEDRPSTPTILGYEVMEERAKFTVYK
hide sequence
RefSeq Acc Id:
XP_006232197 ⟸ XM_006232135
- Peptide Label:
isoform X1
- UniProtKB:
Q6P7R2 (UniProtKB/Swiss-Prot), P57769 (UniProtKB/Swiss-Prot), A0A8L2QN20 (UniProtKB/TrEMBL), A6IH36 (UniProtKB/TrEMBL)
- Sequence:
MATPYVPVPMPIGNSASSFTNNRNQRSSSFGSVSTSSNSSKGQLEDSSVGTCKHTNVQDQMDSASSVCGSPLIRTKFTGTDSSIEYSARPRDTEEQHPDALNWEDRPSTPTILGYEVMEERAKFTVYK
hide sequence
Ensembl Acc Id:
ENSRNOP00000068566 ⟸ ENSRNOT00000083909
Ensembl Acc Id:
ENSRNOP00000041690 ⟸ ENSRNOT00000050987
RefSeq Acc Id:
XP_038958963 ⟸ XM_039103035
- Peptide Label:
isoform X2
Ensembl Acc Id:
ENSRNOP00000093980 ⟸ ENSRNOT00000096600
Ensembl Acc Id:
ENSRNOP00000088326 ⟸ ENSRNOT00000108035
RGD ID: 13691231 Promoter ID: EPDNEW_R1754 Type: multiple initiation site Name: Snx16_1 Description: sorting nexin 16 SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 2 93,518,809 - 93,518,869 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2004-02-26
Snx16
sorting nexin 16
Symbol and Name status set to approved
625702 APPROVED
2002-08-07
Snx16
sorting nexin 16
Symbol and Name status set to provisional
70820 PROVISIONAL
Note Type
Note
Reference
gene_domains
contains a PX domain, a coiled-coil domain and a C-terminal region
737670
gene_physical_interaction
interacts with the phospholipid phosphatidylinositol 3-phosphate
737670
