Snx16 (sorting nexin 16) - Rat Genome Database

Name: Snx16
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Snx16 (sorting nexin 16) Ictidomys tridecemlineatus

Analyze

Symbol:

Snx16

Name:

sorting nexin 16

RGD ID:

12662655

Description:

ENCODES a protein that exhibits identical protein binding (inferred); phosphatidylinositol binding (inferred); INVOLVED IN early endosome to late endosome transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN early endosome (inferred); endosome membrane (inferred); extrinsic component of endosome membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sorting nexin-16

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX16 (sorting nexin 16)	NCBI	Ortholog
Mus musculus (house mouse):	Snx16 (sorting nexin 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Snx16 (sorting nexin 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Snx16 (sorting nexin 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX16 (sorting nexin 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNX16 (sorting nexin 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX16 (sorting nexin 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX16 (sorting nexin 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx16 (sorting nexin 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	50,266,878 - 50,311,384 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936656	2,457,409 - 2,502,847 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936656	2,457,418 - 2,500,281 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

early endosome to late endosome transport (IEA,ISO)

endosome to lysosome transport (IEA)

protein targeting to lysosome (IEA)

Cellular Component

early endosome (IEA)

endosome membrane (IEA)

extrinsic component of endosome membrane (IEA)

intracellular membrane-bounded organelle (IEA)

late endosome (IEA)

Molecular Function

identical protein binding (IEA)

phosphatidylinositol binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Snx16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	50,266,878 - 50,311,384 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936656	2,457,409 - 2,502,847 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936656	2,457,418 - 2,500,281 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX16
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	81,799,583 - 81,842,185 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	81,799,581 - 81,842,866 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	82,711,818 - 82,754,420 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	82,874,373 - 82,916,990 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	82,874,374 - 82,916,990	NCBI
Celera	8	78,716,410 - 78,759,118 (-)	NCBI		Celera
Cytogenetic Map	8	q21.13	NCBI
HuRef	8	78,201,792 - 78,244,561 (-)	NCBI		HuRef
CHM1_1	8	82,763,394 - 82,806,114 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	82,231,264 - 82,273,872 (-)	NCBI		T2T-CHM13v2.0

Snx16
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	10,482,877 - 10,505,194 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	10,482,877 - 10,505,162 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	10,417,817 - 10,440,131 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	10,417,817 - 10,440,102 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	10,417,817 - 10,440,124 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	10,400,679 - 10,422,619 (-)	NCBI		MGSCv36	mm8
Celera	3	10,453,576 - 10,475,883 (-)	NCBI		Celera
Cytogenetic Map	3	A1	NCBI
cM Map	3	2.66	NCBI

Snx16
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	93,242,779 - 93,265,048 (+)	NCBI		GRCr8
mRatBN7.2	2	91,335,896 - 91,357,622 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	91,336,092 - 91,357,619 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	97,826,571 - 97,847,916 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	95,947,552 - 95,968,901 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	91,004,427 - 91,025,772 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	93,518,796 - 93,541,056 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	93,518,806 - 93,540,328 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	113,278,384 - 113,299,936 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	93,274,839 - 93,296,194 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	93,219,800 - 93,241,151 (+)	NCBI
Celera	2	86,938,630 - 86,959,946 (+)	NCBI		Celera
Cytogenetic Map	2	q23	NCBI

Snx16
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	159,312 - 209,183 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	159,369 - 209,166 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX16
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	97,538,303 - 97,585,166 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	73,167,643 - 73,212,150 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	78,324,407 - 78,367,143 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	79,944,729 - 79,987,430 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	79,944,729 - 79,987,430 (-)	Ensembl	panpan1.1		panPan2

SNX16
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	28,882,768 - 28,922,713 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	28,884,426 - 28,920,797 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	29,163,565 - 29,203,367 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	29,017,001 - 29,056,816 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	29,018,415 - 29,056,840 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	29,086,302 - 29,126,084 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	29,100,026 - 29,140,012 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	29,457,213 - 29,497,012 (-)	NCBI		UU_Cfam_GSD_1.0

SNX16
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	54,801,394 - 54,837,981 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	54,801,363 - 54,837,986 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	60,038,128 - 60,074,745 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX16
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	77,203,509 - 77,246,553 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	77,203,521 - 77,246,256 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	63,949,741 - 63,992,500 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx16
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	9,653,868 - 9,699,845 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624744	9,653,844 - 9,699,318 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005335998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000022652 ⟹ ENSSTOP00000018317

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936656	2,457,409 - 2,502,847 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000033635 ⟹ ENSSTOP00000027117

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936656	2,459,399 - 2,499,702 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036563 ⟹ ENSSTOP00000024775

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936656	2,459,399 - 2,499,702 (+)	Ensembl

RefSeq Acc Id:

XM_005335998 ⟹ XP_005336055

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	50,266,878 - 50,311,384 (+)	NCBI
SpeTri2.0	NW_004936656	2,457,418 - 2,500,281 (+)	NCBI

Sequence:

show sequence

GGCCAGCCCCTCCCTCCACCTCTCCTGGGTCCTGGGCCCAGTGGCCCGGCCGAGGCTGGAGCGG
CTAGGAGCCACTACTTTCTGGGCGGACGGTCACGTGAGGCAGCTCAGTGCAGTGGGAGGAGGCG
AGAAGCTGAAGTTAGGAAGAGTCCAGTTTAACCGTCACCGGGAAGCACGCTCGAGCAAGATCAC
CGAGTGCGCTGAGATAGTGAATTCCTAAGAAGAAAATAATGGATTGCATATTAGTTGTTCTCTG
AGTATTTGGACTCAACAGTGTACAAGTTTATTGCAAAGGCCAAAAGAGGATGGCAACTCCTTAT
GTCCCAGTTCCTATGCCCATAGGAACCTCTGCTTCCAGTTTTACAACCAACAGAAATCAAAGGA
GTTCTTCATTTGGAAGTATCTCAACAAGCTCAAACTCTTCCAAAGGCCAATTAGAAGATTCAAA
TATGGGTAATTGTAAACAGACAAGTGTGCCTGATCATATGGATAGTACTTCGTCTGTCTGTAAC
AGTCCTCTCGTTAGGACTAAATTTACAGGTACAGATTCATCCATTGAGTATTCTACTAGACCAA
GAGAAATTGAAGAACAAAGTTGTGAAACAGTGAATTGGGAAGATAGACCATCTACACCTACTAT
ACTGGGTTATGAGGTAATGGAAGAAAGAGCCAAATTTACTGTGTATAAAATACTTGTAAAGAAA
ACCCCAGAAGAGAGTTGGGTAGTTTTCAGAAGATACACTGACTTCTCTAGGCTTAATGACAAAC
TAAAAGAGATGTTTCCAGGCTTTCGATTAGCACTTCCACCAAAACGCTGGTTTAAAGATAACTA
CAATGTCGACTTTTTAGAAGATAGACAATTAGGATTACAAGCATTTCTTCAAAATTTAGTAGCT
CACAAGGACATTGCTAACTGCCTTGCAGTGAGAGAATTTCTTTGTCTGGATGATCCACCAGGTC
CATTTGATAGCCTAGAAGAAAGCAGGGCTTTCTGTGAAACTTTAGAAGAGACTAATTACCATTT
ACAGAGGGAACTACTTGAAAAACAAAAAGAGGTGGAATCATTGAAGAAACTGCTCAGTGAGAAA
CAACTTCACATAAATGCTTTAGAGAGTAGAATCAGAACATTATCTTTAGAAGCTGAAGAATCAT
TGTATGTATCAGGAGTAGAAGGTGGACAGATCCTACGAGTGGAGTCCTGTGGAGTTGAAGTTGA
TCAAGATATCGTGGATGAAGAATCTAGAGCTGATACTAAGCCACACCTAAGCTTCTGTGAACCT
GAAAATGCCACCCCAGAGATAGAAGTAGCAGAATTGGCATATAACGCTGAAGAAGACTAATACA
AAACACAAGCAGCTCTCCATTTCAACATTTCAGCAAATTTAGAATAGAGTGGCAAATACCATTT
AAAAAGAAAAAAAAGGACTATGAAACATTGACAAAAAGAACAAGAATGTATATATATATAAAGT
TTACATAAAAGTTTTTTTAAGTTATTGGGATAGGAAATATATTCATTGCTGCTTTTAATTGTCT
TTTATTCAGCTTTGTATTTAATACACTGAAAAAATCTAGTTAGAATTCTATTATCAAGGTCTAC
ATTCTAAAATACTGTACATAAATTATTATGGTGTTTTGCCTGTATAATGCTCCAGACATAAGTG
TCTGTGTGAGTGTGTGTGTGTAATCAACAGTTACATTAGTCAAGTGGAAATTAGTTGCATGTTA
CTATCTGGGTGATGTATACTTCTTTGTATCTCTGAAATGACATATTTTCATTAATGGCTTAAAT
CAGTGAACATCACAGTAAGGGTAAAGATGAGTTGAATTTTGAATGTTGACATGTTTGCCATCTC
CAAATAAAAATTTCTTATTTGAAATGTTAGTACTATTTAAAAGAGGAGAATGACTTTCTAGTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005336055	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000018317.2
	ENSSTOP00000024775.1
	ENSSTOP00000027117.1
GenBank Protein	KAG3273954	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005336055 ⟸ XM_005335998

- UniProtKB:

I3N1S1 (UniProtKB/TrEMBL), A0A287CTX2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATPYVPVPMPIGTSASSFTTNRNQRSSSFGSISTSSNSSKGQLEDSNMGNCKQTSVPDHMDST
SSVCNSPLVRTKFTGTDSSIEYSTRPREIEEQSCETVNWEDRPSTPTILGYEVMEERAKFTVYK
ILVKKTPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFKDNYNVDFLEDRQLGLQAFL
QNLVAHKDIANCLAVREFLCLDDPPGPFDSLEESRAFCETLEETNYHLQRELLEKQKEVESLKK
LLSEKQLHINALESRIRTLSLEAEESLYVSGVEGGQILRVESCGVEVDQDIVDEESRADTKPHL
SFCEPENATPEIEVAELAYNAEED

hide sequence

RefSeq Acc Id:

ENSSTOP00000024775 ⟸ ENSSTOT00000036563

RefSeq Acc Id:

ENSSTOP00000018317 ⟸ ENSSTOT00000022652

RefSeq Acc Id:

ENSSTOP00000027117 ⟸ ENSSTOT00000033635

Protein Domains

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000024151	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000022652.2	UniProtKB/TrEMBL
	ENSSTOT00000033635.1	UniProtKB/TrEMBL
	ENSSTOT00000036563.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1520.10	UniProtKB/TrEMBL
InterPro	PX_dom	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	SNX16_PX	UniProtKB/TrEMBL
NCBI Gene	Snx16	ENTREZGENE
PANTHER	PX SERINE/THREONINE KINASE PXK	UniProtKB/TrEMBL
	SORTING NEXIN-16	UniProtKB/TrEMBL
Pfam	PF00787	UniProtKB/TrEMBL
PROSITE	PS50195	UniProtKB/TrEMBL
SMART	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	SSF64268	UniProtKB/TrEMBL
UniProt	A0A287CTX2	ENTREZGENE, UniProtKB/TrEMBL
	A0A287D0R6_ICTTR	UniProtKB/TrEMBL
	I3N1S1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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