D2Rat372 Marker Search Result - Rat Genome Database

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Marker: D2Rat372

Symbol: D2Rat372
Previously known as: oxsts10632; R0302-D06; 
RGD ID: 41838
Expected Size: 245 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82123,109,609 - 123,109,854 (+)Marker Load Pipeline
mRatBN7.22121,181,567 - 121,181,814 (+)MAPPERmRatBN7.2
Rnor_6.02125,031,365 - 125,031,609NCBIRnor6.0
Rnor_5.02144,644,892 - 144,645,136UniSTSRnor5.0
RGSC_v3.42125,096,355 - 125,096,600RGDRGSC3.4
RGSC_v3.42125,096,356 - 125,096,600UniSTSRGSC3.4
RGSC_v3.12125,046,272 - 125,046,517RGD
Celera2116,117,095 - 116,117,339UniSTS
FHH x ACI Map256.6899RGD
FHH x ACI Map256.6899UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer TGACACCAAAGCCCATGAAT
Reverse Primer CAAGCAAGCACAATACCACA
 
Template 
CGTCAAACAAGGAAGACAGGGATTAATACCTGAGATTTACTTCAGACCTCTGCACTGACACCAA
AGCCCATGAATCACACACACACACACACACACACACACACACACACACACACACACACACACAC
ATACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGACAGACAGACAGAGAC
AGAGACAGAGACACAGAGAAACACAGAGAGACAGAAACAGAGAGAGACAGAGACAGAAAGAGGG
AGAGGGAGAGAGGATAAACTGNATGTGGTATTGTGCTTGCTTGTCCTTGGAAATGGTCTTAAGG
CAGGGCAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGT
TATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCT
AATGAGTGAGNTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCT
GTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGGGTTTGCGTATTGGGCGCC
AGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCT
GAGAGAGTTGCAGCAGGGTCCACGCTGGTTTGCCCCGCAGGCGAAATCTGTTTGATGGTGGTTC
GANTCGGAAATCCTTATAATCAAAGATAGCCGAATAGGTTGGTTTTTCNGTTTGACAGATCCCT
TTAANAGTGGNCCNCGTCAAGGGANACGTTTNGGGTGCNTAGTNAC
Strain, Expected Size(s)

ACI/N 253 AVN/Orl 251 BBDP/Rhw 251
BBDR/Rhw 251 BC/CpbU 243 BDIX/Han 243
BDVII/Cub 243 BN-Lx/Cub 243 BN/SsNHsd 243
BP/Cub 243 BUF/Pit 243 COP/OlaHsd 253
DA/PitN 243 DON/Melb 241 F344/Pit 239
FHH/Eur 243 GH/Omr 241 GK/KyoSwe 243
IS/Kyo 243 LE/Mol 249 LEW/Pit 251
LH/Mav 243 LN/Mav 243 LOU/CHan 243
M520/N 243 MHS/Gib 245 MNR/N 243
MNRA/N 243 MNS/Gib 243 MR/Pit 243
NEDH/K 243 NP9 251 ODU/N 243
OKA/Wsl 243 OM/Ztm 243 P5C 253
PVG/Pit 243 SD/Rij 243 SHR/OlaHsd 243
SHRSP/Riv 243 SR/Jr 243 SS/Jr 243
WAG/RijKyo 241 WF/Pit 251 WIST/Nhg 243
WN/N 251 WTC/Kyo 243


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
11373430Rps6-ps3ribosomal protein S6, pseudogene 32121167632121248902Rat
GenBank Nucleotide JH613515.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 62 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)238573329122609194Rat

1 to 10 of 62 rows