Fbxl7 (F-box and leucine-rich repeat protein 7) - Rat Genome Database

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Gene: Fbxl7 (F-box and leucine-rich repeat protein 7) Rattus norvegicus
Analyze
Symbol: Fbxl7
Name: F-box and leucine-rich repeat protein 7
RGD ID: 1305813
Description: Predicted to be involved in G2/M transition of mitotic cell cycle; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and protein polyubiquitination. Predicted to be located in centrosome. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL7 (F-box and leucine rich repeat protein 7); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: F-box/LRR-repeat protein 7; LOC361907
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2277,139,775 - 77,509,223 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl277,140,826 - 77,509,223 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx284,270,635 - 84,639,171 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0282,392,357 - 82,760,863 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0277,398,724 - 77,767,177 (-)NCBIRnor_WKY
Rnor_6.0279,067,907 - 79,439,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl279,067,915 - 79,078,258 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0298,741,811 - 99,111,076 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4278,232,361 - 78,610,165 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1278,178,856 - 78,649,371 (-)NCBI
Celera272,829,001 - 73,197,580 (-)NCBICelera
Cytogenetic Map2q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19028597   PMID:22306998   PMID:25778398   PMID:28218735  


Genomics

Comparative Map Data
Fbxl7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2277,139,775 - 77,509,223 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl277,140,826 - 77,509,223 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx284,270,635 - 84,639,171 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0282,392,357 - 82,760,863 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0277,398,724 - 77,767,177 (-)NCBIRnor_WKY
Rnor_6.0279,067,907 - 79,439,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl279,067,915 - 79,078,258 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0298,741,811 - 99,111,076 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4278,232,361 - 78,610,165 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1278,178,856 - 78,649,371 (-)NCBI
Celera272,829,001 - 73,197,580 (-)NCBICelera
Cytogenetic Map2q22NCBI
FBXL7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38515,500,180 - 15,939,793 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl515,500,180 - 15,939,795 (+)EnsemblGRCh38hg38GRCh38
GRCh37515,500,289 - 15,939,902 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36515,553,305 - 15,992,900 (+)NCBINCBI36Build 36hg18NCBI36
Build 34515,553,304 - 15,992,900NCBI
Celera515,523,976 - 15,963,562 (+)NCBICelera
Cytogenetic Map5p15.1NCBI
HuRef515,473,183 - 15,912,276 (+)NCBIHuRef
CHM1_1515,500,175 - 15,939,783 (+)NCBICHM1_1
T2T-CHM13v2.0515,439,591 - 15,879,159 (+)NCBIT2T-CHM13v2.0
Fbxl7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391526,540,540 - 26,895,650 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1526,540,545 - 26,895,666 (-)EnsemblGRCm39 Ensembl
GRCm381526,540,454 - 26,895,564 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1526,540,459 - 26,895,580 (-)EnsemblGRCm38mm10GRCm38
MGSCv371526,470,214 - 26,825,319 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361526,485,184 - 26,840,289 (-)NCBIMGSCv36mm8
Celera1527,297,939 - 27,655,658 (-)NCBICelera
Cytogenetic Map15B1NCBI
Fbxl7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554264,659,968 - 5,041,475 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554264,659,787 - 5,044,074 (+)NCBIChiLan1.0ChiLan1.0
FBXL7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1515,643,666 - 16,075,623 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl515,643,846 - 16,075,623 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0515,804,479 - 16,237,326 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FBXL7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1487,348,187 - 87,637,517 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl487,350,321 - 87,612,238 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha486,867,252 - 87,219,613 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0487,980,951 - 88,269,112 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl487,983,060 - 88,424,855 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1487,502,813 - 87,852,354 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0487,745,973 - 88,095,924 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0488,597,528 - 88,949,898 (-)NCBIUU_Cfam_GSD_1.0
Fbxl7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213232,011,696 - 232,380,215 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936665607,805 - 973,462 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936665605,225 - 973,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXL7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl164,784,726 - 5,194,189 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1164,784,452 - 5,194,193 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2165,583,939 - 5,594,475 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXL7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1415,191,309 - 15,621,160 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606412,850,671 - 13,280,473 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxl7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475112,432,207 - 12,828,946 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475112,431,974 - 12,831,463 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fbxl7
2398 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:33
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000031170
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)27478666494359546Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)27478666494359546Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
2317058Aia13Adjuvant induced arthritis QTL 132.9joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)27653932277991361Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)276539322102785628Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)276539322102785628Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat

Markers in Region
D2Got36  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2277,503,119 - 77,503,363 (+)MAPPERmRatBN7.2
Rnor_6.0279,433,884 - 79,434,127NCBIRnor6.0
Rnor_5.0299,104,973 - 99,105,216UniSTSRnor5.0
RGSC_v3.4278,604,061 - 78,604,305RGDRGSC3.4
RGSC_v3.4278,604,062 - 78,604,305UniSTSRGSC3.4
RGSC_v3.1278,549,023 - 78,549,267RGD
Celera273,191,475 - 73,191,720UniSTS
RH 3.4 Map2398.0UniSTS
RH 3.4 Map2398.0RGD
RH 2.0 Map2395.0RGD
Cytogenetic Map2q22UniSTS
D2Got38  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2277,345,173 - 77,345,300 (+)MAPPERmRatBN7.2
Rnor_6.0279,276,178 - 79,276,304NCBIRnor6.0
Rnor_5.0298,947,455 - 98,947,581UniSTSRnor5.0
RGSC_v3.4278,439,521 - 78,439,647UniSTSRGSC3.4
RGSC_v3.1278,384,484 - 78,384,609RGD
Celera273,033,399 - 73,033,525UniSTS
RH 3.4 Map2397.2UniSTS
RH 3.4 Map2397.2RGD
RH 2.0 Map2396.3RGD
Cytogenetic Map2q22UniSTS
BF397347  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2277,305,012 - 77,305,256 (+)MAPPERmRatBN7.2
Rnor_6.0279,233,630 - 79,233,873NCBIRnor6.0
Rnor_5.0298,907,413 - 98,907,656UniSTSRnor5.0
RGSC_v3.4278,399,607 - 78,399,850UniSTSRGSC3.4
Celera272,993,342 - 72,993,585UniSTS
RH 3.4 Map461.3UniSTS
Cytogenetic Map2q22UniSTS
BE117721  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2277,283,156 - 77,283,341 (+)MAPPERmRatBN7.2
Rnor_6.0279,211,774 - 79,211,958NCBIRnor6.0
Rnor_5.0298,885,557 - 98,885,741UniSTSRnor5.0
RGSC_v3.4278,377,751 - 78,377,935UniSTSRGSC3.4
Celera272,971,502 - 72,971,686UniSTS
RH 3.4 Map2382.8UniSTS
Cytogenetic Map2q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 12 2 2 2 17 12 26
Low 3 31 51 35 19 35 7 10 57 23 15 11 7
Below cutoff 4 4 4 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000031170   ⟹   ENSRNOP00000033571
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl277,140,826 - 77,509,223 (-)Ensembl
Rnor_6.0 Ensembl279,067,915 - 79,078,258 (-)Ensembl
RefSeq Acc Id: NM_001108545   ⟹   NP_001102015
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2277,140,826 - 77,509,223 (-)NCBI
Rnor_6.0279,068,958 - 79,439,987 (-)NCBI
Rnor_5.0298,741,811 - 99,111,076 (-)NCBI
RGSC_v3.4278,232,361 - 78,610,165 (-)RGD
Celera272,829,001 - 73,197,580 (-)RGD
Sequence:
RefSeq Acc Id: XM_006232087   ⟹   XP_006232149
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2277,139,775 - 77,160,766 (-)NCBI
Rnor_6.0279,067,907 - 79,090,649 (-)NCBI
Rnor_5.0298,741,811 - 99,111,076 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102576   ⟹   XP_038958504
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2277,139,775 - 77,487,406 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102015 (Get FASTA)   NCBI Sequence Viewer  
  XP_006232149 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958504 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL82624 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001102015   ⟸   NM_001108545
- UniProtKB: F1M6W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232149   ⟸   XM_006232087
- Peptide Label: isoform X1
- UniProtKB: F1M6W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000033571   ⟸   ENSRNOT00000031170
RefSeq Acc Id: XP_038958504   ⟸   XM_039102576
- Peptide Label: isoform X1
Protein Domains
F-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6W6-F1-model_v2 AlphaFold F1M6W6 1-444 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305813 AgrOrtholog
BioCyc Gene G2FUF-53929 BioCyc
Ensembl Genes ENSRNOG00000024433 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000033571 ENTREZGENE
  ENSRNOP00000033571.7 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031170 ENTREZGENE
  ENSRNOT00000031170.7 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro F-box_dom_cyclin-like UniProtKB/TrEMBL
  F-box_dom_like UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_Cys-con_subtyp UniProtKB/TrEMBL
NCBI Gene 361907 ENTREZGENE
Pfam F-box-like UniProtKB/TrEMBL
  LRR_6 UniProtKB/TrEMBL
PhenoGen Fbxl7 PhenoGen
PROSITE FBOX UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
  LRR_CC UniProtKB/TrEMBL
Superfamily-SCOP F-box_dom_Skp2-like UniProtKB/TrEMBL
UniProt F1M6W6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Fbxl7  F-box and leucine-rich repeat protein 7   Fbxl7_predicted  F-box and leucine-rich repeat protein 7 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Fbxl7_predicted  F-box and leucine-rich repeat protein 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED