D2Rat94 Marker Search Result - Rat Genome Database

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Marker: D2Rat94

Symbol: D2Rat94
Previously known as: oxsts6916; R0063-D05; 
RGD ID: 37880
Expected Size: 220 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2231,523,409 - 31,523,629 (+)MAPPERmRatBN7.2
Rnor_6.0230,393,491 - 30,393,710NCBIRnor6.0
Rnor_5.0249,552,658 - 49,552,877UniSTSRnor5.0
RGSC_v3.4231,182,282 - 31,182,501UniSTSRGSC3.4
RGSC_v3.4231,182,168 - 31,182,521RGDRGSC3.4
RGSC_v3.1231,102,651 - 31,102,870RGD
Celera227,545,608 - 27,545,827UniSTS
RH 3.4 Map262.7RGD
RH 3.4 Map262.7UniSTS
RH 2.0 Map2117.7RGD
SHRSP x BN Map210.4998RGD
FHH x ACI Map218.6499RGD
Cytogenetic Map2q14-q16UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   OKA/Wsl   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Anxrr3  
Genes:   Naip6  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer ACACTGGGATGGATGCAGA
Reverse Primer TCCCAGAAAAAGAAAAGGGAA
 
Template 
TGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTGTAGTAAGATGTTTGGAG
TCCCAGAAAAAGAAAAGGGAAAAAGTGTGTGCATAGAGGCTCATTTCAGTCGGGAAATGGAGAA
AGGAGGATGAAGTCTTACCCTGGGCTACATAGGGAATTCCAGGCCAGCCTATACTACGTGCTAC
TCTCTCTTACTCAAAACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA
ATAATTCCTTCTGCATCCATCCCAGTGTCTGACATATGCATGTTAGGAGATTTAACTAATGACT
AAGGGTGAAGGCAGTGCTTAACGGTCTTTCAGGACTATTCTGGTTATAGATGATACAATTTTAA
ATAGCCACAAGAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAA
ATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAACATAAAGTGTAAAGCTGGGGTG
C

Region

Nucleotide Sequences
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 191568 UniSTS
  474371 UniSTS