Snrpn-ps5 (small nuclear ribonucleoprotein polypeptide N, pseudogene 5) - Rat Genome Database

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Gene: Snrpn-ps5 (small nuclear ribonucleoprotein polypeptide N, pseudogene 5) Rattus norvegicus
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Symbol: Snrpn-ps5
Name: small nuclear ribonucleoprotein polypeptide N, pseudogene 5
RGD ID: 1596440
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC685256; similar to small nuclear ribonucleoparticle-associated protein; small nuclear ribonucleoprotein polypeptide N like 3; small nuclear ribonucleoprotein-associated protein N-like; Snrpnl3
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8227,152,565 - 27,153,579 (+)NCBIGRCr8
mRatBN7.2225,417,655 - 25,418,541 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0223,841,728 - 23,842,540 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0243,013,423 - 43,014,299 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4224,478,643 - 24,479,366 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera221,490,656 - 21,491,467 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Snrpn-ps5
15 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039103454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039103454   ⟹   XP_038959382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8227,152,565 - 27,153,579 (+)NCBI
mRatBN7.2225,417,655 - 25,418,541 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038959382 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038959382   ⟸   XM_039103454


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54832 BioCyc
NCBI Gene 685256 ENTREZGENE
PhenoGen Snrpn-ps5 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-30 Snrpn-ps5  small nuclear ribonucleoprotein polypeptide N, pseudogene 5  Snrpnl3  small nuclear ribonucleoprotein polypeptide N like 3  Name and Symbol changed 629549 APPROVED
2023-10-16 Snrpnl3  small nuclear ribonucleoprotein polypeptide N like 3  Snrpnl1  small nuclear ribonucleoprotein polypeptide N like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Snrpnl1  small nuclear ribonucleoprotein polypeptide N like 1  LOC685256  similar to small nuclear ribonucleoparticle-associated protein  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC685256  similar to small nuclear ribonucleoparticle-associated protein      Symbol and Name status set to provisional 70820 PROVISIONAL