Sv2c (synaptic vesicle glycoprotein 2c)

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Gene: Sv2c (synaptic vesicle glycoprotein 2c) Rattus norvegicus

Analyze

Symbol:

Sv2c

Name:

synaptic vesicle glycoprotein 2c

RGD ID:

619718

Description:

Predicted to have transmembrane transporter activity. Predicted to be involved in chemical synaptic transmission; neurotransmitter transport; and transmembrane transport. Localizes to integral component of synaptic vesicle membrane. Orthologous to human SV2C (synaptic vesicle glycoprotein 2C); PARTICIPATES IN cell-extracellular matrix signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 6-propyl-2-thiouracil; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

synaptic vesicle protein 2C

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SV2C (synaptic vesicle glycoprotein 2C)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Sv2c (synaptic vesicle glycoprotein 2c)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Sv2c (synaptic vesicle glycoprotein 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SV2C (synaptic vesicle glycoprotein 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SV2C (synaptic vesicle glycoprotein 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sv2c (synaptic vesicle glycoprotein 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SV2C (synaptic vesicle glycoprotein 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	SV2C (synaptic vesicle glycoprotein 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sv2c (synaptic vesicle glycoprotein 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SV2C (synaptic vesicle glycoprotein 2C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Sv2c (synaptic vesicle glycoprotein 2c)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	sv2ca (synaptic vesicle glycoprotein 2Ca)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG3168	Alliance	DIOPT (InParanoid\|OrthoInspector\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	27,232,933 - 27,428,479 (-)	NCBI
Rnor_6.0 Ensembl	2	26,501,833 - 26,699,333 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	26,495,757 - 26,707,691 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	45,631,737 - 45,828,663 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	26,326,862 - 26,555,019 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	26,247,230 - 26,475,388 (-)	NCBI
Celera	2	23,293,289 - 23,483,743 (-)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP)

Botulinum toxin type A (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

genistein (ISO)

lead diacetate (EXP,ISO)

mercury dibromide (ISO)

methamphetamine (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

panobinostat (ISO)

PCB138 (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

SCH 23390 (EXP)

sodium arsenite (ISO)

sodium chloride (ISO)

trichostatin A (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chemical synaptic transmission (IEA)

neurotransmitter transport (IEA)

transmembrane transport (IEA)

Cellular Component

integral component of membrane (IBA)

integral component of synaptic vesicle membrane (EXP,IDA)

neuron projection (IBA)

synaptic vesicle (IDA,ISO)

synaptic vesicle membrane (IBA)

Molecular Function

protein binding (IPI,ISO)

transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

cell-extracellular matrix signaling pathway (IEA)

References

References - curated


1.	Boyken J, etal., Neuron. 2013 Apr 24;78(2):285-97. doi: 10.1016/j.neuron.2013.02.027.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Janz R, etal., J Neurosci 1998 Nov 15;18(22):9269-81.
4.	Mahrhold S, etal., FEBS Lett. 2006 Apr 3;580(8):2011-4. Epub 2006 Mar 7.
5.	MGD data from the GO Consortium
6.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	Pipeline to import KEGG annotations from KEGG into RGD
8.	RGD automated data pipeline
9.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	RGD automated import pipeline for gene-chemical interactions
11.	Strotmeier J, etal., FEBS Lett. 2014 Apr 2;588(7):1087-93. doi: 10.1016/j.febslet.2014.02.034. Epub 2014 Feb 25.

Additional References at PubMed

PMID:10625067	PMID:12687700	PMID:15866046	PMID:16306227	PMID:16543415

Genomics

Comparative Map Data

Sv2c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	27,232,933 - 27,428,479 (-)	NCBI
Rnor_6.0 Ensembl	2	26,501,833 - 26,699,333 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	26,495,757 - 26,707,691 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	45,631,737 - 45,828,663 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	26,326,862 - 26,555,019 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	26,247,230 - 26,475,388 (-)	NCBI
Celera	2	23,293,289 - 23,483,743 (-)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

SV2C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	5	76,083,383 - 76,353,939 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	5	75,847,463 - 76,353,939 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	5	75,379,208 - 75,649,764 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	75,415,061 - 75,657,172 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	5	75,526,658 - 75,661,645	NCBI
Celera	5	71,320,469 - 71,515,084 (+)	NCBI
Cytogenetic Map	5	q13.3	NCBI
HuRef	5	70,632,037 - 70,829,092 (+)	NCBI		HuRef
CHM1_1	5	74,812,360 - 75,082,474 (+)	NCBI		CHM1_1

Sv2c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	96,091,102 - 96,270,837 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	13	96,091,102 - 96,269,085 (-)	Ensembl
GRCm38	13	95,959,443 - 96,132,577 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	95,954,594 - 96,132,577 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	96,729,398 - 96,902,532 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	13	97,060,142 - 97,233,276 (-)	NCBI			mm8
Celera	13	99,577,609 - 99,753,046 (-)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI

Sv2c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	24,496,434 - 24,683,179 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	24,489,304 - 24,682,555 (-)	NCBI	ChiLan1.0	ChiLan1.0

SV2C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	39,566,207 - 39,836,653 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	39,566,207 - 39,836,852 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	38,969,056 - 39,222,300 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SV2C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	30,232,892 - 30,440,046 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	30,232,710 - 30,440,327 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	31,469,780 - 31,678,170 (-)	NCBI
ROS_Cfam_1.0	3	30,156,170 - 30,363,724 (-)	NCBI
UMICH_Zoey_3.1	3	30,087,278 - 30,241,695 (-)	NCBI
UNSW_CanFamBas_1.0	3	30,066,666 - 30,270,719 (-)	NCBI
UU_Cfam_GSD_1.0	3	30,437,678 - 30,645,896 (-)	NCBI

Sv2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_ltri_2	NW_024407213	190,039,748 - 190,265,745 (+)	NCBI
SpeTri2.0	NW_004936549	592,975 - 819,252 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SV2C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	84,996,716 - 85,236,130 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	84,996,697 - 85,235,827 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	86,622,023 - 86,679,582 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SV2C
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	70,358,164 - 70,601,764 (+)	NCBI
ChlSab1.1 Ensembl	4	70,358,236 - 70,601,242 (+)	Ensembl

Sv2c
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624869	611,873 - 838,014 (+)	NCBI

Position Markers

BE108455

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	26,694,240 - 26,694,401	NCBI	Rnor6.0
Rnor_5.0	2	45,823,627 - 45,823,788	UniSTS	Rnor5.0
RGSC_v3.4	2	26,549,983 - 26,550,144	UniSTS	RGSC3.4
Celera	2	23,478,693 - 23,478,854	UniSTS
RH 3.4 Map	2	13.3	UniSTS
Cytogenetic Map	2	q12	UniSTS

RH139477

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	26,700,656 - 26,700,861	NCBI	Rnor6.0
Rnor_5.0	2	45,830,043 - 45,830,248	UniSTS	Rnor5.0
RGSC_v3.4	2	26,556,399 - 26,556,604	UniSTS	RGSC3.4
Celera	2	23,485,123 - 23,485,328	UniSTS
RH 3.4 Map	2	13.3	UniSTS
Cytogenetic Map	2	q12	UniSTS

AI179314

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	26,568,693 - 26,568,848	NCBI	Rnor6.0
Rnor_5.0	2	45,698,340 - 45,698,495	UniSTS	Rnor5.0
RGSC_v3.4	2	26,424,057 - 26,424,212	UniSTS	RGSC3.4
Celera	2	23,354,862 - 23,355,017	UniSTS
RH 3.4 Map	2	13.3	UniSTS
Cytogenetic Map	2	q12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	26267995	43133606	Rat
631682	Bp115	Blood pressure QTL 115	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	1	35167060	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	20276981	65276981	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	14237830	59237830	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	41179397	Rat
738012	Anxrr3	Anxiety related response QTL 3	3.8		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	2	7893600	52893600	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	23837491	149614623	Rat
1643006	Pain1	Pain QTL 1	3.63	0.005	mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	2	26267995	48676716	Rat
2300168	Bmd47	Bone mineral density QTL 47	6.6	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	2	20641371	65641371	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	5417336	42777046	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	9444679	49615930	Rat
1578671	Bmd10	Bone mineral density QTL 10	5.4		femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	2	9444679	68866454	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26186097	135654963	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	26186097	83819822	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	26186097	83819822	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26186097	83819822	Rat
1357990	Ael1	Aortic elastin QTL 1	3.1	0.00091	aorta elastin amount (VT:0003905)	aortic elastin	2	19016465	64016465	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26186097	142053534	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	23837719	169852670	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	169852800	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	169852800	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	23837719	169852670	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	23837491	169852800	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	218957222	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	218957222	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	3127638	105149020	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	3686308	48686308	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	22612952	67612952	Rat
10402051	Gdil2	Gastrointestinal dilation QTL 2			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	23280647	75687607	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	16679272	245624402	Rat
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	10555275	55555275	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	48
Count of miRNA genes:	42
Interacting mature miRNAs:	44
Transcripts:	ENSRNOT00000024459
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									37
Low		36	10	2		2	3	3	35	12	31	8	3
Below cutoff	3	6	15	7	17	7	5	6	2	10	10	3	5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF060174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CQ819367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000024459 ⟹ ENSRNOP00000024459

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	26,501,833 - 26,699,333 (-)	Ensembl

RefSeq Acc Id:

NM_031593 ⟹ NP_113781

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	27,232,933 - 27,428,479 (-)	NCBI
Rnor_6.0	2	26,502,115 - 26,699,276 (-)	NCBI
Rnor_5.0	2	45,631,737 - 45,828,663 (-)	NCBI
RGSC_v3.4	2	26,326,862 - 26,555,019 (-)	RGD
Celera	2	23,293,289 - 23,483,743 (-)	RGD

Sequence:

show sequence

GCGCGCTGCAGGAAGAGTGGCAGACCGAAGCGGCCTCGGGCTGCAAACGGAGGGGCGCTCGCGC
GGCGACGGCTGCAGGGCTGACACCGCTCAGGGCAGGGGGGTCCCAGGCGGCTGGAACGCTCTAT
TCTGAACTGTGAGTGGATGATGCTGTTGCAGCCAAGCTGCTGAACACACTCCGTGGACTCTTCC
CTGCTGTGCCTTGCCCATCGGCCGAGATAAAATGGAAGACTCCTACAAGGATAGGACTTCACTG
ATGAAGGGCGCCAAGGACATTGCCAAAGAGGTGAAGAAGCAAACAGTGAAGAAGGTGAACCAGG
CAGTGGACCGGGCCCAGGATGAATACACCCAGCGGTCCTACAGTCGATTCCAGGATGAAGATGA
TGATGATGACTACTACCCACCTGGAGAAACCTACAGTGGGGAGGCCAATGATGATGAAGGCTCA
AGTGAAGCCACTGAGGGTCACGATGAAGAAGACGAGATCTATGAAGGGGAATACCAGGGCATCC
CCAGCACGAACCAAGGGAAGGACAGCATAGTGTCTGTAGGACAACCCAAAGGAGATGAGTACAA
GGACCGCAGAGAGCTGGAGTCAGAGAGGAGGGCTGATGAGGAGGAGCTCGCCCAGCAGTATGAG
CTGATAATCCAAGAGTGTGGCCATGGCCGTTTCCAGTGGGCCCTTTTCTTCGTCCTGGGCATGG
CTCTCATGGCAGACGGCGTGGAGGTGTTTGTGGTGGGCTTTGTGTTACCCAGTGCAGAGACAGA
CCTATGCATACCGAATTCAGGATCTGGATGGCTAGGCAGCATAGTGTACCTCGGGATGATGGTG
GGGGCGTTCTTCTGGGGAGGACTGGCAGACAAAGTGGGAAGGAAGCAGTCTCTTCTGATTTGCA
TGTCCGTCAACGGATTCTTTGCCTTCCTTTCTTCATTTGTCCAAGGTTACGGCTTCTTTCTCCT
CTGTCGTTTGCTTTCAGGATTCGGGATTGGAGGCGCCATTCCCACTGTGTTCTCCTACTTTGCT
GAAGTCCTGGCCCGGGAGAAGCGCGGTGAGCACCTCAGTTGGCTCTGCATGTTCTGGATGATTG
GCGGTATCTATGCTTCAGCCATGGCCTGGGCCATCATCCCCCACTATGGGTGGAGCTTCAGCAT
GGGCTCAGCCTACCAGTTCCACAGCTGGCGCGTCTTCGTCATCGTCTGTGCCCTCCCGTGCGTC
TCCTCGGTGGTGGCCCTCACCTTCATGCCCGAAAGCCCTCGGTTCTTGCTGGAGGTAGGAAAAC
ATGATGAAGCCTGGATGATTCTGAAGCTAATTCATGATACCAACATGAGAGCCCGGGGCCAGCC
AGAGAAGGTCTTCACGGTAAATAAAATCAAGACTCCCAAGCAAATAGATGAGCTGATTGAGATT
GAGAGCGACACAGGAACCTGGTACCGGAGGTGTTTTGTTCGGATCCGCACAGAACTGTACGGAA
TTTGGTTGACTTTTATGAGATGCTTCAACTACCCGGTCAGGGAAAACACCATAAAGCTTACGAT
TGTTTGGTTCACCCTGTCCTTTGGGTACTATGGACTGTCCGTTTGGTTCCCAGATGTCATTAAA
CACCTCCAGTCTGACGAGTACGCCCTGCTGACTCGGAATGTGCAGAAGGATAAATATGCAAACT
TTAGCATTAACTTCACCATGGAAAACCAGGTCCACACCGGAATGGAATATGACAATGGCAGGTT
CCTCGGAGTCAAATTCAAATCGGTAACCTTCAAGGATTCAGTGTTTAAGTCCTGCACCTTTGAC
GATGTGACCTCAGTCAACACCTACTTCAAGAACTGCACGTTTATTGATACCCTTTTTGAGAACA
CAGATTTTGAGCCCTATAAATTCATAGACAGCGAGTTTCAAAACTGCTCGTTTCTTCACAATAA
GACGGGATGTCAGATTACTTTTGACGACGACTACAGTGCCTACTGGATTTACTTTGTCAACTTT
CTCGGGACATTGGCAGTGTTACCAGGAAATATCGTGTCTGCTCTCCTGATGGACAGGATCGGGC
GCTTAACGATGCTAGGTGGCTCCATGGTGCTCTCGGGGATCAGCTGCTTCTTCCTGTGGTTTGG
CACCAGCGAATCCATGATGATAGGCATGCTGTGCTTGTACAACGGACTGACCATCTCAGCGTGG
AACTCTCTTGATGTAGTCACGGTGGAACTATACCCCACAGACCGGAGAGCAACGGGCTTTGGCT
TCTTGAACGCACTCTGTAAAGCAGCGGCCGTCCTGGGAAACTTAATATTCGGCTCCTTGGTCAG
CATCACCAAAGCAATCCCTATCCTGCTGGCTTCCACCGTGCTCGTGTGTGGAGGACTCGTGGGG
CTGCGCCTGCCCGACACAAGAACCCAGGTTCTGATGTGACAAAAGCCATTCTCTTCTCTCACCA
TGGGTCAGCCCTATTGCCTGACTCAAGGCTTCAGAGTTTTTATGTATAGAAAGGTGGCCAAGTA
TCAGAACTCAAACTTTTGCTGTGACGTAAATGTAGCTGTGTATTGTCCCCGCCAGTGTGATTTG
CAGGGTCCTCCCCCTCCCCCGCGCCTTGTTATCTTTTCCTAATTGTGATGTTCCTGCTTCCG

hide sequence

RefSeq Acc Id:

XM_017590796 ⟹ XP_017446285

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	26,495,757 - 26,707,691 (-)	NCBI

Sequence:

show sequence

AGCTTTCAGGGTGTGGAGCTAAGAAGGAGGTTTCACCTAGAATGGTTGTCAAATTCACTGGAGA
AAGTAGCATTTGGTTTTCCAGAAAGTGTAGGTAAGGAAGTCAGAGAAACAGTCCAGATTAGAAA
TGCTGGGGTGAAGAACTGGAGAGGAAGCCTGGAGCCACATAATAGATGGATTTTCTTGGCTGCT
CTATTCTGAACTGTGAGTGGATGATGCTGTTGCAGCCAAGCTGCTGAACACACTCCGTGGACTC
TTCCCTGCTGTGCCTTGCCCATCGGCCGAGATAAAATGGAAGACTCCTACAAGGATAGGACTTC
ACTGATGAAGGGCGCCAAGGACATTGCCAAAGAGGTGAAGAAGCAAACAGTGAAGAAGGTGAAC
CAGGCAGTGGACCGGGCCCAGGATGAATACACCCAGCGGTCCTACAGCCGATTCCAGGATGAAG
ATGATGATGATGACTACTACCCACCTGGAGAAACCTACAGTGGGGAGGCCAATGATGATGAAGG
CTCAAGTGAAGCCACTGAGGGTCACGATGAAGAAGACGAGATCTATGAAGGGGAATACCAGGGC
ATCCCCAGCACGAACCAAGGGAAGGACAGCATAGTGTCTGTAGGACAACCCAAAGGAGATGAGT
ACAAGGACCGCAGAGAGCTGGAGTCAGAGAGGAGGGCTGATGAGGAGGAGCTCGCCCAGCAGTA
TGAGCTGATAATCCAAGAGTGTGGCCATGGCCGTTTCCAGTGGGCCCTTTTCTTCGTCCTGGGC
ATGGCTCTCATGGCAGACGGCGTGGAGGTGTTTGTGGTGGGCTTTGTGTTACCCAGTGCAGAGA
CAGACCTATGCATACCGAATTCAGGATCTGGATGGCTAGGCAGCATAGTGTACCTCGGGATGAT
GGTGGGGGCGTTCTTCTGGGGAGGACTGGCAGACAAAGTGGGAAGGAAGCAGTCTCTTCTGATT
TGCATGTCCGTCAACGGATTCTTTGCCTTCCTTTCTTCATTTGTCCAAGGTTACGGCTTCTTTC
TCCTCTGTCGTTTGCTTTCAGGATTCGGGATTGGAGGCGCCATTCCCACTGTGTTCTCCTACTT
TGCTGAAGTCCTGGCCCGGGAGAAGCGCGGTGAGCACCTCAGTTGGCTCTGCATGTTCTGGATG
ATTGGCGGTATCTATGCTTCAGCCATGGCCTGGGCCATCATCCCCCACTATGGGTGGAGCTTCA
GCATGGGCTCAGCCTACCAGTTCCACAGCTGGCGCGTCTTCGTCATCGTCTGTGCCCTCCCGTG
CGTCTCCTCGGTGGTGGCCCTCACCTTCATGCCCGAAAGCCCTCGGTTCTTGCTGGAGGTAGGA
AAACATGATGAAGCCTGGATGATTCTGAAGCTAATTCATGATACCAACATGAGAGCCCGGGGCC
AGCCAGAGAAGGTCTTCACGGTAAATAAAATCAAGACTCCCAAGCAAATAGATGAGCTGATTGA
GATTGAGAGTGACACAGGAACCTGGTACCGGAGGTGTTTTGTTCGGATCCGCACAGAACTGTAC
GGAATTTGGTTGACTTTTATGAGATGCTTCAACTACCCGGTCAGGGAAAACACCATAAAGCTTA
CGATTGTTTGGTTCACCCTGTCCTTTGGGTACTATGGACTGTCCGTTTGGTTCCCAGATGTCAT
TAAACACCTCCAGTCTGACGAGTACGCCCTGCTGACTCGGAATGTGCAGAAGGATAAATATGCA
AACTTTAGCATTAACTTCACCATGGAAAACCAGGTCCACACCGGAATGGAATATGACAATGGCA
GGTTCCTCGGAGTCAAATTCAAATCGGTAACCTTCAAGGATTCAGTGTTTAAGTCCTGCACCTT
TGACGATGTGACCTCAGTCAACACCTACTTCAAGAACTGCACGTTTATTGATACCCTTTTTGAG
AACACAGATTTTGAGCCCTATAAATTCATAGACAGCGAGTTTCAAAACTGCTCGTTTCTTCACA
ATAAGACGGGATGTCAGATTACTTTTGACGACGACTACAGTGCCTACTGGATTTACTTTGTCAA
CTTTCTCGGGACATTGGCAGTGTTACCAGGAAATATCGTGTCTGCTCTCCTGATGGACAGGATC
GGGCGCTTAACGATGCTAGGTGGCTCCATGGTGCTCTCGGGGATCAGCTGCTTCTTCCTGTGGT
TTGGCACCAGCGAATCCATGATGATAGGCATGCTGTGCTTGTACAACGGACTGACCATCTCAGC
GTGGAACTCTCTTGATGTAGTCACGGTGGAACTATACCCCACAGACCGGAGAGCAACGGGCTTT
GGCTTCTTGAACGCACTCTGTAAAGCAGCGGCCGTCCTGGGAAACTTAATATTCGGCTCCTTGG
TCAGCATCACCAAAGCAATCCCTATCCTGCTGGCTTCCACCGTGCTCGTGTGTGGAGGACTCGT
GGGGCTGCGCCTGCCCGACACAAGAACCCAGGTTCTGATGTGACAAAAGCCATTCTCTTCTCTC
ACCATGGGTCAGCCCTATTGCCTGACTCAAGGCTTCAGAGTTTTTATGTATAGAAAGGTGGCCA
AGTATCAGAACTCAAACTTTTGCTGTGACGTAAATGTAGCTGTGTATTGTCCCCGCCAGTGTGA
TTTGCAGGGTCCTCCCCCTCCCCCGCGCCTTGTTATCTTTTCCTAATTGTGATGTTCCTGCTTC
CCAGTGCCCCGTGGAAATGTTCCTAAAATGTCCCGGTTAGCCATGCTTTCCTGAGGACTACATT
CACCAAGAATCTAAAAAGCCTGCTGCTGGCACTCTATTAACAGGAAGTTTAAGTTGGCATAATT
GAGTTTGTGCTGAGGAAAGGGATTTCTTTCTCTCTTTTTTTTTTTCTCATACAGTGTGATATTT
CCTGTTTATTTAGAAAAAGGACAGCCAGCCACTCTAGCTGTTATAGCAGGGTATTTCAAGAAAA
CTGTGTGACACCAAGCACTTCTGGGCGGGGCAGGGGGTGGGGGAGGGAACACTCTTAGAGGCAG
GACTGTTAAGGTGATTTTGCTAACAAAAATTTAAGGTCTGTCCCCAGTTGGTGACAAAGCCCTA
CTTGAGCACAGAAGGCAGGCTTTCGATAGAAATGGGTAAGAAATTCACAGCCAAAGCTATTTGG
AAATGCAGACGAAAACTTCTCTCATATGACCTCTTGAGGGACAACACCACACACTCTCCTTTGA
TCAACTGTCCACTGTCACTTTTTAGCCCAAATCTCTACAACAGGTCCCGTCTTCCGCTTCCCCA
GAAGGCTGTGAGCTCCCAGCCTTGTGTCTAGTTTCTGAGACAGCCTGCTCTCCCAAGCAACCCT
CCATCGGGACAGCACTTCCTGGTGGGTGGGTATCTGTTTTACCTCTGGAATCTTCATGTGCATG
GAAGGAGGGGTCAGCAGGACGTTCCCACGGGGCCAGCTGTCAGCTAGATGACCTTCTAGTCTCT
TGCTGAGCGCCCCTCCCCCCCAGGCCCATCCTTTCACACATCTTTGAAATCTGAAGCCTCCTTG
TAGATTTGCAGCCTGTGATAACAACCAGCATAAGGCCCATATTTAAACAGCATTCTCTTTTTAA
GCGCCTCTGTCTTGTTGGAGGGCCTCTTTGCTTATTTTAAGCTTTTCTTGCATGACCACAGCCC
TGGGGCTTCCAGAGAAAAGGAAACTTCTGTTTCCACTAATCATTATGTTCAGAGATGGCCCTGC
TCCCTGGAGGCCCTGCTGCCTCCCTTTCCCTAGCACATTCCCTGATGGGCTCTGGGAGATCAAA
TTCTGTGAAAAGCTCCTTGATTAGCATAAGCCATTAATCCGCTGTCCCCATCAAGTAATGAAGG
CTTGGTAGAGGGAGGGACAGCCTAGAGCTAAGATAGATGAAAGCTGCAGAAAGAAAGTGGTTCC
CTGCAGATAATCCAAGTGCCCAGAGCCTGGGCATCAAGGTTTATGGGAGCAAGAACCACAGAGC
TGACCAGAATAGGGAGGCATGACGATTTGAAAGACACCAACAAAGTGGGACCAGAACAGAACTC
ACTTCTGTTTCTCACCCCGGGAAACAAACCTGTATTTCCAAAGCTGAAGAAGGTATTTCTAGTC
TTCCATGAAGGCTCATTTCTCTCTCCTGTGTGCACCACCATTGTCTTCTTTTTAAAAAGGCATG
TTTGGGGCCCAGAGCAGATCTTCTGGTTGAATGTGGCATGCAGCAAAATTGCTACAAAAGTAAG
ACATGAATCCCTATCTTCCCAGTCAAAAGGAAAGCATATGTCTACAAAGGCACTGCTTTCTCTA
CTCTGACTTGGTGTCAGAGTGACCTCACGGGATAGTCTTCACTCTCAAATTGTCTCTGCTCTCT
GTCTTATAGTCTAGCTACATCAAGTGCATTCCAAACTGCAAGGCATAGTTATTCAGAATTGTAT
CTGGACGATGGGTTGGGTCAGCAAGGGATGACCCAGCAGAACCCTTCTTTATAAGACCATCTGC
CATCTGTCTCCTTCGGAAGAACCATTCCTGTCACCTACCCCAAGCTTCCCAGGTGGCCCAAGAA
GGATCTCTTCTATAATCTCCTGGACAATCGGTGGTCACAAACCTTCTTGGTCACCATCTTTCCC
ACTTCCCACACATTTCCCTCAGCCTCCTCACTGTACATAGCCTTTACTCGCCATGATGGTATCC
CCGTTGCTTCTCAAACATGTTCTGTGGTTTTTCAGGTAGAATTAGAGGTTTGGAAACAACCATG
AGATTCAACAGAAGCCCCGGTTATATGAGTGTCACCAGCCTGGACACCAGGGTAGACATCTGCC
ATCCCTTGTCATGTACAGGAAAAGGAAGTTGAAAGCTGTTTCAAAGGTGAAACCGCTCCATCTG
TACCTGCATTGTGAACTCCTTTTCTAACTAAACTCCCCACCGTGGCTCTTCAGAATCAGTCCAG
AATGCTCCCGAGTTTCATTCTCTCTGAATCCGCTCAATAGGAAAGAAAATAAAACAGACAACAA
TGGCAACTAACCAGCAGCTCTGAACTGGGGCTTCTGTGAGAGACTCTACCTGACACACTGGGCC
GTAAGCCTCACACCCAGCCCTGCATCCTGACTCATTTCAGACCAGTACTGACCCACACTCAGAG
GCCCAAGTTCCTTAACCAGGAAAAGATCTTTCTAAGGAGAAGGAACTTGATCTTAGCCAAAAGG
TCAAGAACTAAGTCACTGGACATACTGGTCCTCAGTTTCTCCACGTATAGAGAAAGGGAATGGT
ACTATTTTATTCTCTAAGACTCTGTAGGACTACGGTGAGAATACCTTCATGTTATCTTCCTTTG
CTGGTGGGAAGCCTACCTTACTTACCCTCAACACACTTGAAAGTAAAACATAAGCAAGTGTGTA
AGGAGGGCGGGAGGTTGCTTGGGAAGACCTCATCCAATAGGCGACAGCAGTTGCTATGTCATCC
ATGCCCACCCCTGGATTTTAAGTGTTTCTCACTTCAGAGTCATTGTTAATCACGGTCCTAGAAG
ACACACTGCAGTTAGAAGACAAACACACAGAAGTAGACCACCCACGGGCTGTATCCTATAGTCC
CCCATCCATCTACTTCACCATTTTCTTGAAATGCTGCCCTTAAATGGATCTAGACCACCAGGAA
CAGTGTTTCTCAATGATTACACATAAATTGGTAGATGGGCCCTTACTTTGACATCTCATCCAAT
CAGAGTTCAAGTTTGCACCAAAACCTCACTTGCTTTCAGAAGGTCTTGGGAGATCACGGGGAGG
GAGGGACGCGACGGCCGAGGTGAAGTCCAGTGCTCCATTGATAACGTTCCAGCAATGAGATTAG
CGCACCTGGGAGACATTCTAAACCCTAGGATTGTTTCCAGAGCATTCCGTGGGAACACTTCCTG
CCAACCACAATAGAATGTGATATTCTCCCATTTGTGTTTACCTTACATCAAAAAGGGTCTTCCC
TAGTTCATCAAGATGCCTCACTTGTTCGTGTACGAAAGGCTCTGAAACCAGGAATGCCTAGATT
TGACCTCCACCTGGAACTATAGACAATCAACATATTGTTTGGGGCCTGGTGGCTGTATATCAGA
TTTCCTTTAAACCCCATATTGTGCCAAACATAGTTACCAACCACCACCAAACCCTCCCACGCCA
AACAGGCGTGCGGAGACAACAAACACGCATCCACACAGTGGAGCGCTCTGAAGTAGCCTTTGTG
TTTCTTCTCGTTTGTCTTCTGCTGAGCAAAGTGTCTATTTTAGGTAAAATTTCTCTTGTAATCT
GACAAAAGGAAGTTGTCAGGAAACTGGCAGTTCTCCATGTGCTGTTCTGAGGCTTCCACTCATG
ACCATCCCATTCTCCTGTGAACTGTCTCTCACCAACCACATGCAAGCCATCGATCACCAGGCTT
CCTTATGCCTCTCTCGACACCCAGATGCAGCTTAGTAAGCCCAGCATTTTGAGCCATAGGGTAC
ACAGCCTGTGTGTCCGTTAGGTGACTGATTAAAGCGGTGAATCTGGGTAGAGGAGACAGTACAC
CAGTCTCTCCTTTCACATGCTTTTTGAGCTAGTACCAGCTAAGACTTGGCCTCTGCATGCAAGG
TGTTGAGGCACCGGGCTGCATGCAGATATTTAACCCTTTGCAGTGTTTCTTTGAGAACACAGAG
CAGGGGATGACAGACAAGACAGTCTCATATCTTATATTAGGCCTCCCTGTCAATGTCTTATTTT
TCCAAGTTTTAAACAACTTATAATCTACAACAAGCAGGTAGGACAAGAACTGTGCATGACTCGG
GGTTGCCTGAGGCAGAAGGAACCACCTCTAGGCAGTACTAAACAGTGCTTGAAAAAAGAAAAAC
CACATTCGTGTCTCTGTTTCTTCAAATGGTCTCCACAGGAAATTGCACTGAGATATTGATCAAG
GAGGAGATGGCTGCAAAGATAGTCTTGCCTTTCTGGGGATGTTTGTTTCTCCAGAGCTGTTCTT
TAAAGGGAGCTAGGCAGTAAGTGTGTCCCCTCTGGGCTTGCTAGAAGCTCTCCTTCCAGGGACT
CAGCGACTCAGCAAGCCAGCCTCTAGTCCAACCCTCCAAGGGGTGTTTCCTTTCCGATCTTAGA
TATGTGTGACCCAGTCACGCTGTCTTGCAGACTTTCCCCTCCCCTTGCCTCAGCAAATAAGCCA
CCCAGAAAACAGGTTCTGACAACAGGAGGCCAGGGAGTTTACAGGTTCCAATTTGAAATGGATT
GCAGGGCTGTTGCCAAGCGTTCTGAAGCCGCAAAGGATTTCAGGGGGGCTCCAGATCATCCAAG
GAAGCTGGGCAAAGAGGGTAGCCCTTCTTGTCTGTGTAAGTACCTACTCAGAGCAGAAGGTCAG
ATGCTTAAACTACAGCCATTGCCTATCCTCAGCCTGTCCCACCATATTTGCATGGCCCCTAGAG
CTGAGAAAATTGAGAACTGGGGAGAGACAACAGCTTTTGATTCAAACTCAAAGAACTTTTTACA
CCAGGCCAAATACCATCCCTGACAACAAGGAAATAGTGCCCCTGAGCACCTCTTGGGTGCTCTG
AAAAGGACTGGCCAGCCAGAGCATAGGGGGTGGCGTCATCTAAATCCAACCATGGCTAGGAGCA
GGCTCAACCTGGTTCTTAGTGCCAGTGGTTTAAGTTTCAGAAAAATTGAAAGGCAGTCAAGGAA
TGTCGCCACCATTATAATTAAATCGGTTACATTTTGAAGCAATATATATTTAAAACTCATCACT
TCCCACTTATTTCCTACATTTTTTTTCTACCATGCCCTTGAGGAAAGTAAGAGATGCCTATACA
TCTCTACTTTGGAAGTACTGTATAATGGCGTCCTATTGGATGTGTGTTCCCCAGTGACAGGGTC
AGTGACATTATGCTGGGCTCGTCTGCAGCAGATTATGCTGGGCTCGTCCGCAGCGGTAACAATT
ACATCATGGAAAGCAATGAAGGCTGTAGCCTTTGTCAGACTTCTCCTGCCTCTACACAACCCCA
GGCATTGGTAAGCATTCACCAACATATCACGATCTGAAGCCCTGAAGACTTTTTGGCTTGCCAT
AACTCGGCTGTAGCGTGTTTCACTAGCATGCACAGGGCCCTGGCCTTGTTGGGGAAGGAGGTTG
GGCTTCCAACCTACTGATCTAGGCCAGGTGGAGTTGAATGTCCCCTTGGGCTTGTGAGTCAACA
TGTCATTACTCATAAGACCAAGGGAAGGAAAGACTTATCCAGTACTCAAAGGCTTCTTTCTCCA
TTCATAATTGGCACAGACTAGGACCAGCCATGCAGAGAATCCACTGGCCTCTGGGTGTTGCTCC
TTCAGGGAGAATTCTGGTAACTTGGCTATTTCAGGCACTTTCCCAAGTGTGGTCTTATATTCTT
TGCTTGAAACAGGAATACACTGAATGGACCGTGTGCTCTTAATCAGGGTCTAGCTAAAAGAAAG
CCCTAGAAGATGTTTTTTCCAGGTACACTTCCACCTCAGACTACAACCCCACCCTGCTTTTGGC
AACGCGATCTTAGCAGTGGTCCTGTCCTTGGTTTGGGTGTATGGGTGTTTGGGCATTGTAGTCT
TTCTCTTTTCTATATTCAGTGCTCCGTCCGCCGTCCCACTGTTTGGTCCAGTCCCCCCTGTTGT
ACTGTATATATGTACTGCATGTGTGACCCTCAGTAACTCCCATGTCAGGTTTCCGGAGTCTCCA
TCGAGTTCAGCTGAGCTTGCTGTGAATCCATCTTTCTGGTATGCTCCTTTGTGCCTCATTCCTG
ATTGCCAAATGGTTGGGCCAAGTGCATCTTCACTCAATGTCCCGAGACAGCCGTGTATGTGTAA
CCTTGTGACAGGGCATGCTCTGTGTGGGATGGCTCGTGTGCAGCGTAAATCTATCTCGTGTGGA
AGTGTGTATCCATTTATACGCCAGATAACTATCATTCGTGTAACAGCTGCAAAGGTATTTAATG
TACATCAGATTTTAAAAAAAAAGAGCGTTTTTGCTCTATTATATTCAAATAAAGATTGCCGAGT
GACTGACAGTCCCTTCTAAACAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_113781	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC78628	(Get FASTA)	NCBI Sequence Viewer
	CAG34351	(Get FASTA)	NCBI Sequence Viewer
	EDM10107	(Get FASTA)	NCBI Sequence Viewer
	Q9Z2I6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_113781 ⟸ NM_031593

- UniProtKB:

Q9Z2I6 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEDSYKDRTSLMKGAKDIAKEVKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEDDDDDYYPPGET
YSGEANDDEGSSEATEGHDEEDEIYEGEYQGIPSTNQGKDSIVSVGQPKGDEYKDRRELESERR
ADEEELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSGW
LGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLLCRLLSGFGIG
GAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMGSAYQFHSWR
VFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTNMRARGQPEKVFTVNKIK
TPKQIDELIEIESDTGTWYRRCFVRIRTELYGIWLTFMRCFNYPVRENTIKLTIVWFTLSFGYY
GLSVWFPDVIKHLQSDEYALLTRNVQKDKYANFSINFTMENQVHTGMEYDNGRFLGVKFKSVTF
KDSVFKSCTFDDVTSVNTYFKNCTFIDTLFENTDFEPYKFIDSEFQNCSFLHNKTGCQITFDDD
YSAYWIYFVNFLGTLAVLPGNIVSALLMDRIGRLTMLGGSMVLSGISCFFLWFGTSESMMIGML
CLYNGLTISAWNSLDVVTVELYPTDRRATGFGFLNALCKAAAVLGNLIFGSLVSITKAIPILLA
STVLVCGGLVGLRLPDTRTQVLM

hide sequence

RefSeq Acc Id:

XP_017446285 ⟸ XM_017590796

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEDSYKDRTSLMKGAKDIAKEVKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEDDDDDYYPPGET
YSGEANDDEGSSEATEGHDEEDEIYEGEYQGIPSTNQGKDSIVSVGQPKGDEYKDRRELESERR
ADEEELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSGW
LGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLLCRLLSGFGIG
GAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMGSAYQFHSWR
VFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTNMRARGQPEKVFTVNKIK
TPKQIDELIEIESDTGTWYRRCFVRIRTELYGIWLTFMRCFNYPVRENTIKLTIVWFTLSFGYY
GLSVWFPDVIKHLQSDEYALLTRNVQKDKYANFSINFTMENQVHTGMEYDNGRFLGVKFKSVTF
KDSVFKSCTFDDVTSVNTYFKNCTFIDTLFENTDFEPYKFIDSEFQNCSFLHNKTGCQITFDDD
YSAYWIYFVNFLGTLAVLPGNIVSALLMDRIGRLTMLGGSMVLSGISCFFLWFGTSESMMIGML
CLYNGLTISAWNSLDVVTVELYPTDRRATGFGFLNALCKAAAVLGNLIFGSLVSITKAIPILLA
STVLVCGGLVGLRLPDTRTQVLM

hide sequence

RefSeq Acc Id:

ENSRNOP00000024459 ⟸ ENSRNOT00000024459

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619718	AgrOrtholog
Ensembl Genes	ENSRNOG00000018094	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000024459	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000024459	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	5peptide_repeat	UniProtKB/Swiss-Prot
	MFS	UniProtKB/Swiss-Prot
	MFS_dom	UniProtKB/Swiss-Prot
	MFS_sugar_transport-like	UniProtKB/Swiss-Prot
	MFS_trans_sf	UniProtKB/Swiss-Prot
	Sugar_transporter_CS	UniProtKB/Swiss-Prot
	SV2	UniProtKB/Swiss-Prot
KEGG Report	rno:29643	UniProtKB/Swiss-Prot
NCBI Gene	29643	ENTREZGENE
Pfam	MFS_1	UniProtKB/Swiss-Prot
	Pentapeptide_4	UniProtKB/Swiss-Prot
	Sugar_tr	UniProtKB/Swiss-Prot
PhenoGen	Sv2c	PhenoGen
PROSITE	MFS	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF103473	UniProtKB/Swiss-Prot
TIGRFAMs	synapt_SV2	UniProtKB/Swiss-Prot
UniProt	Q9Z2I6	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Sv2c	synaptic vesicle glycoprotein 2c		synaptic vesicle protein 2C	Name updated	1299863	APPROVED
2002-08-07	Sv2c	synaptic vesicle protein 2C			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in synaptic vesicles	634114
gene_function	vesicular transporter of a charged molecule	634114

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)