Zfr (zinc finger RNA binding protein) - Rat Genome Database

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Gene: Zfr (zinc finger RNA binding protein) Rattus norvegicus
Analyze
Symbol: Zfr
Name: zinc finger RNA binding protein
RGD ID: 1311890
Description: Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Predicted to be located in chromosome; cytoplasm; and nucleus. Orthologous to human ZFR (zinc finger RNA binding protein); INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC365703; zinc finger RNA-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8262,864,333 - 62,927,377 (+)NCBIGRCr8
mRatBN7.2261,137,611 - 61,200,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl261,137,611 - 61,200,322 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx268,273,575 - 68,336,149 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0266,387,272 - 66,449,689 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0261,388,614 - 61,451,145 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0262,150,251 - 62,213,048 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl262,150,251 - 62,213,048 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0282,476,651 - 82,539,546 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4261,578,795 - 61,641,287 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1261,507,932 - 61,568,205 (+)NCBI
Celera257,494,326 - 57,556,779 (-)NCBICelera
Cytogenetic Map2q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
casticin  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dorsomorphin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fonofos  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
haloperidol  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
levonorgestrel  (ISO)
manganese(II) chloride  (EXP)
Mecamylamine  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
nicotine  (ISO)
parathion  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
terbufos  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
torcetrapib  (ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
tubocurarine  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The zinc-finger protein ZFR is critical for Staufen 2 isoform specific nucleocytoplasmic shuttling in neurons. Elvira G, etal., J Neurochem. 2006 Jan;96(1):105-17. Epub 2005 Nov 8.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22658674   PMID:22681889   PMID:30053369  


Genomics

Comparative Map Data
Zfr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8262,864,333 - 62,927,377 (+)NCBIGRCr8
mRatBN7.2261,137,611 - 61,200,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl261,137,611 - 61,200,322 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx268,273,575 - 68,336,149 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0266,387,272 - 66,449,689 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0261,388,614 - 61,451,145 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0262,150,251 - 62,213,048 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl262,150,251 - 62,213,048 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0282,476,651 - 82,539,546 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4261,578,795 - 61,641,287 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1261,507,932 - 61,568,205 (+)NCBI
Celera257,494,326 - 57,556,779 (-)NCBICelera
Cytogenetic Map2q16NCBI
ZFR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38532,354,350 - 32,444,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl532,354,350 - 32,444,740 (-)EnsemblGRCh38hg38GRCh38
GRCh37532,354,456 - 32,444,846 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36532,390,213 - 32,480,601 (-)NCBINCBI36Build 36hg18NCBI36
Build 34532,390,213 - 32,480,601NCBI
Celera532,236,180 - 32,326,535 (-)NCBICelera
Cytogenetic Map5p13.3NCBI
HuRef532,321,365 - 32,411,643 (-)NCBIHuRef
CHM1_1532,356,348 - 32,446,993 (-)NCBICHM1_1
T2T-CHM13v2.0532,468,061 - 32,558,413 (-)NCBIT2T-CHM13v2.0
Zfr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391512,117,649 - 12,185,535 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1512,117,917 - 12,185,769 (+)EnsemblGRCm39 Ensembl
GRCm381512,117,563 - 12,185,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1512,117,831 - 12,185,683 (+)EnsemblGRCm38mm10GRCm38
MGSCv371512,047,606 - 12,115,204 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361512,062,578 - 12,129,188 (+)NCBIMGSCv36mm8
Celera1511,897,447 - 11,964,826 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.9NCBI
Zfr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542618,198,932 - 18,255,774 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542618,198,932 - 18,257,340 (-)NCBIChiLan1.0ChiLan1.0
ZFR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2477,859,596 - 77,950,206 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1576,013,404 - 76,103,836 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0577,890,015 - 77,980,332 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1583,295,837 - 83,363,027 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl583,295,040 - 83,361,615 (+)Ensemblpanpan1.1panPan2
ZFR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1475,038,248 - 75,124,154 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl474,982,467 - 75,123,053 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha474,674,790 - 74,761,869 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0475,558,006 - 75,645,130 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl475,558,026 - 75,645,130 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1475,295,219 - 75,382,247 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0475,424,065 - 75,511,076 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0475,954,509 - 76,041,579 (+)NCBIUU_Cfam_GSD_1.0
Zfr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213222,929,561 - 223,004,478 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365188,367,479 - 8,440,851 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365188,367,396 - 8,442,271 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1618,560,280 - 18,656,294 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11618,561,909 - 18,656,341 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZFR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1431,635,430 - 31,723,164 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl431,636,851 - 31,723,078 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607121,862,839 - 21,950,811 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475922,135,358 - 22,207,442 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475922,135,431 - 22,207,283 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfr
298 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:463
Count of miRNA genes:234
Interacting mature miRNAs:311
Transcripts:ENSRNOT00000016196
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25666087974786777Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1354592Rf50Renal function QTL 503.5urine output (VT:0003620)timed urine volume (CMO:0000260)25382274774786777Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)25760561276539510Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat

Markers in Region
RH129361  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2261,199,804 - 61,200,010 (+)MAPPERmRatBN7.2
Rnor_6.0262,212,531 - 62,212,736NCBIRnor6.0
Rnor_5.0282,476,963 - 82,477,168UniSTSRnor5.0
RGSC_v3.4261,640,999 - 61,641,204UniSTSRGSC3.4
Celera257,494,638 - 57,494,843UniSTS
Cytogenetic Map2q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 56 40 19 40 8 10 74 35 41 11 8
Low 1 1 1 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC161952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000016196   ⟹   ENSRNOP00000016196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl261,137,611 - 61,200,322 (+)Ensembl
Rnor_6.0 Ensembl262,150,251 - 62,213,048 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080241   ⟹   ENSRNOP00000075053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl261,137,611 - 61,200,322 (+)Ensembl
Rnor_6.0 Ensembl262,150,493 - 62,211,504 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087636   ⟹   ENSRNOP00000073762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl261,137,729 - 61,200,322 (+)Ensembl
Rnor_6.0 Ensembl262,198,562 - 62,212,623 (+)Ensembl
RefSeq Acc Id: NM_001270972   ⟹   NP_001257901
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,864,672 - 62,927,377 (+)NCBI
mRatBN7.2261,137,611 - 61,200,322 (+)NCBI
Rnor_6.0262,150,251 - 62,213,048 (+)NCBI
Rnor_5.0282,476,651 - 82,539,546 (-)NCBI
Celera257,494,326 - 57,556,779 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232054   ⟹   XP_006232116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,864,619 - 62,927,144 (+)NCBI
mRatBN7.2261,137,737 - 61,200,102 (+)NCBI
Rnor_6.0262,150,358 - 62,212,815 (+)NCBI
Rnor_5.0282,476,651 - 82,539,546 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590988   ⟹   XP_017446477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,864,677 - 62,927,144 (+)NCBI
mRatBN7.2261,137,616 - 61,200,102 (+)NCBI
Rnor_6.0262,150,256 - 62,212,815 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590989   ⟹   XP_017446478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,864,677 - 62,927,144 (+)NCBI
mRatBN7.2261,137,616 - 61,200,102 (+)NCBI
Rnor_6.0262,150,256 - 62,212,815 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039102742   ⟹   XP_038958670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,864,612 - 62,927,144 (+)NCBI
mRatBN7.2261,137,616 - 61,200,102 (+)NCBI
RefSeq Acc Id: XM_063282250   ⟹   XP_063138320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,864,333 - 62,927,144 (+)NCBI
RefSeq Acc Id: XM_063282251   ⟹   XP_063138321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,864,798 - 62,927,144 (+)NCBI
RefSeq Acc Id: XR_010063629
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,864,677 - 62,922,618 (+)NCBI
RefSeq Acc Id: NP_001257901   ⟸   NM_001270972
- UniProtKB: Q562A2 (UniProtKB/Swiss-Prot),   A0A0H2UHJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232116   ⟸   XM_006232054
- Peptide Label: isoform X3
- UniProtKB: Q562A2 (UniProtKB/Swiss-Prot),   A0A0G2K6C9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446477   ⟸   XM_017590988
- Peptide Label: isoform X1
- UniProtKB: Q562A2 (UniProtKB/Swiss-Prot),   A0A8L2RAI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446478   ⟸   XM_017590989
- Peptide Label: isoform X4
- UniProtKB: Q562A2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075053   ⟸   ENSRNOT00000080241
RefSeq Acc Id: ENSRNOP00000016196   ⟸   ENSRNOT00000016196
RefSeq Acc Id: ENSRNOP00000073762   ⟸   ENSRNOT00000087636
RefSeq Acc Id: XP_038958670   ⟸   XM_039102742
- Peptide Label: isoform X5
- UniProtKB: Q562A2 (UniProtKB/Swiss-Prot),   A6KJQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138320   ⟸   XM_063282250
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063138321   ⟸   XM_063282251
- Peptide Label: isoform X6
Protein Domains
DZF

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q562A2-F1-model_v2 AlphaFold Q562A2 1-1073 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691198
Promoter ID:EPDNEW_R1718
Type:initiation region
Name:Zfr_1
Description:zinc finger RNA binding protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0262,150,411 - 62,150,471EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311890 AgrOrtholog
BioCyc Gene G2FUF-54047 BioCyc
Ensembl Genes ENSRNOG00000011627 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016196 ENTREZGENE
  ENSRNOT00000016196.7 UniProtKB/TrEMBL
  ENSRNOT00000080241.2 UniProtKB/TrEMBL
  ENSRNOT00000087636.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7319274 IMAGE-MGC_LOAD
  IMAGE:9026284 IMAGE-MGC_LOAD
InterPro DZF_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DZF_dom_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DZF_dom_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Matrin/U1-like-C_Znf_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NT_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:365703 UniProtKB/TrEMBL
MGC_CLONE MGC:109426 IMAGE-MGC_LOAD
  MGC:187747 IMAGE-MGC_LOAD
NCBI Gene 365703 ENTREZGENE
PANTHER ZINC FINGER RNA-BINDING PROTEIN UniProtKB/Swiss-Prot
  ZINC FINGER RNA-BINDING PROTEIN UniProtKB/Swiss-Prot
  ZINC FINGER RNA-BINDING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER RNA-BINDING PROTEIN UniProtKB/TrEMBL
Pfam DZF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DZF_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-met UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfr PhenoGen
PROSITE DZF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011627 RatGTEx
SMART DZF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K6C9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0H2UHJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2RAI7 ENTREZGENE, UniProtKB/TrEMBL
  A6KJQ3 ENTREZGENE, UniProtKB/TrEMBL
  B1WC00_RAT UniProtKB/TrEMBL
  Q562A2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Zfr  zinc finger RNA binding protein  Zfr_predicted  zinc finger RNA binding protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Zfr_predicted  zinc finger RNA binding protein (predicted)      Symbol and Name status set to approved 70820 APPROVED