Trpc3 (transient receptor potential cation channel, subfamily C, member 3) - Rat Genome Database

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Gene: Trpc3 (transient receptor potential cation channel, subfamily C, member 3) Rattus norvegicus
Analyze
Symbol: Trpc3
Name: transient receptor potential cation channel, subfamily C, member 3
RGD ID: 61973
Description: Enables calcium activated cation channel activity. Predicted to be involved in several processes, including metal ion transport; positive regulation of calcium ion transport into cytosol; and positive regulation of cardiac muscle hypertrophy in response to stress. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in cerebellar ataxia type 41. Orthologous to human TRPC3 (transient receptor potential cation channel subfamily C member 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ion channel protein; short transient receptor potential channel 3; transient receptor potential cation channel subfamily C member 3; transient receptor protein 3; trp-related protein 3; TrpC3c; Trrp3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Trpc3em2Mcwi   Trpc3em1Mcwi  
Genetic Models: SS-Trpc3em1Mcwi SS-Trpc3em2Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22119,481,313 - 119,619,333 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2119,481,400 - 119,558,855 (-)Ensembl
Rnor_6.02123,329,954 - 123,467,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2123,329,875 - 123,407,496 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,945,309 - 143,022,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,117,180 - 123,184,016 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12123,062,239 - 123,110,364 (-)NCBI
Celera2114,439,430 - 114,505,661 (-)NCBICelera
Cytogenetic Map2q25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Tissue expression of TRPC3 and TRPC6 in hypertensive Munich Wistar Fromter rats showing proteinuria. Liu Y, etal., Am J Nephrol. 2010;31(1):36-44. doi: 10.1159/000254060. Epub 2009 Oct 30.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. A calcium-activated cation current by an alternatively spliced form of Trp3 in the heart. Ohki G, etal., J Biol Chem 2000 Dec 15;275(50):39055-60.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
10. Enhanced expression of transient receptor potential channels in idiopathic pulmonary arterial hypertension. Yu Y, etal., Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13861-6. Epub 2004 Sep 9.
Additional References at PubMed
PMID:9368034   PMID:12938168   PMID:14505576   PMID:15199065   PMID:15225788   PMID:15297455   PMID:15327778   PMID:15604128   PMID:15623527   PMID:15672411   PMID:15728370   PMID:16280289  
PMID:16950785   PMID:17082763   PMID:17141310   PMID:17158171   PMID:17494704   PMID:17699554   PMID:17903696   PMID:18388325   PMID:18502908   PMID:19029480   PMID:19287093   PMID:19741172  
PMID:20107112   PMID:20378853   PMID:20426773   PMID:20933035   PMID:21062895   PMID:21098487   PMID:21316341   PMID:21670282   PMID:22129453   PMID:22207762   PMID:22721989   PMID:22787041  
PMID:22926417   PMID:23045459   PMID:23529532   PMID:23602965   PMID:23776229   PMID:24811179   PMID:24844791   PMID:24965271   PMID:25467798   PMID:25479966   PMID:25873305   PMID:25958233  
PMID:26219954   PMID:26598506   PMID:27833156   PMID:27899482   PMID:28495616   PMID:28697491   PMID:28711865   PMID:28764936   PMID:29435486   PMID:29748835   PMID:30318928   PMID:34497367  


Genomics

Candidate Gene Status
Trpc3 is a candidate Gene for QTL Cm49
Comparative Map Data
Trpc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22119,481,313 - 119,619,333 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2119,481,400 - 119,558,855 (-)Ensembl
Rnor_6.02123,329,954 - 123,467,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2123,329,875 - 123,407,496 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,945,309 - 143,022,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,117,180 - 123,184,016 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12123,062,239 - 123,110,364 (-)NCBI
Celera2114,439,430 - 114,505,661 (-)NCBICelera
Cytogenetic Map2q25NCBI
TRPC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384121,874,481 - 121,952,060 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4121,874,481 - 121,952,060 (-)EnsemblGRCh38hg38GRCh38
GRCh374122,795,636 - 122,873,215 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364123,019,882 - 123,074,061 (-)NCBINCBI36hg18NCBI36
Build 344123,158,037 - 123,212,216NCBI
Celera4120,186,020 - 120,258,701 (-)NCBI
Cytogenetic Map4q27NCBI
HuRef4118,526,892 - 118,599,598 (-)NCBIHuRef
CHM1_14122,776,636 - 122,849,349 (-)NCBICHM1_1
T2T-CHM13v2.04125,178,529 - 125,256,098 (-)NCBI
Trpc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,674,631 - 36,744,577 (-)NCBIGRCm39mm39
GRCm39 Ensembl336,674,631 - 36,744,316 (-)Ensembl
GRCm38336,620,482 - 36,690,429 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,620,482 - 36,690,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,519,404 - 36,589,089 (-)NCBIGRCm37mm9NCBIm37
MGSCv36336,812,122 - 36,863,152 (-)NCBImm8
Celera336,505,427 - 36,575,273 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.93NCBI
Trpc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542818,628,890 - 18,678,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542818,628,951 - 18,678,525 (+)NCBIChiLan1.0ChiLan1.0
TRPC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14125,217,086 - 125,288,918 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4125,217,086 - 125,289,014 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04114,079,395 - 114,153,014 (-)NCBIMhudiblu_PPA_v0panPan3
TRPC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11918,207,565 - 18,272,551 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1918,207,417 - 18,271,828 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1918,424,474 - 18,489,427 (+)NCBI
ROS_Cfam_1.01918,325,131 - 18,390,132 (+)NCBI
ROS_Cfam_1.0 Ensembl1918,257,209 - 18,389,851 (+)Ensembl
UMICH_Zoey_3.11918,276,335 - 18,341,249 (+)NCBI
UNSW_CanFamBas_1.01918,557,985 - 18,622,931 (+)NCBI
UU_Cfam_GSD_1.01919,033,797 - 19,098,726 (+)NCBI
Trpc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530165,875,569 - 65,989,487 (+)NCBI
SpeTri2.0NW_0049366621,130,555 - 1,171,352 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8102,129,611 - 102,206,946 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18102,129,539 - 102,206,512 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28109,324,967 - 109,402,046 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,160,569 - 69,233,322 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl769,158,867 - 69,231,858 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603748,122,249 - 48,196,700 (-)NCBIVero_WHO_p1.0
Trpc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247772,153,265 - 2,232,449 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247772,154,887 - 2,232,476 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D2Rat340  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02123,360,405 - 123,360,640NCBIRnor6.0
Rnor_5.02142,975,758 - 142,975,970UniSTSRnor5.0
RGSC_v3.42123,147,918 - 123,148,131RGDRGSC3.4
RGSC_v3.42123,147,919 - 123,148,131UniSTSRGSC3.4
RGSC_v3.12123,092,880 - 123,093,093RGD
Celera2114,469,851 - 114,470,051UniSTS
SHRSP x BN Map244.4298UniSTS
SHRSP x BN Map244.4298RGD
Cytogenetic Map2q25UniSTS
D2Got77  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,519,366 - 119,519,543 (+)MAPPERmRatBN7.2
Rnor_6.02123,368,030 - 123,368,208NCBIRnor6.0
Rnor_5.02142,983,360 - 142,983,536UniSTSRnor5.0
RGSC_v3.42123,155,520 - 123,155,699RGDRGSC3.4
RGSC_v3.42123,155,521 - 123,155,699UniSTSRGSC3.4
RGSC_v3.12123,100,483 - 123,100,661RGD
Celera2114,477,427 - 114,477,605UniSTS
RH 3.4 Map2675.0RGD
RH 3.4 Map2675.0UniSTS
Cytogenetic Map2q25UniSTS
RH129709  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,549,285 - 119,549,473 (+)MAPPERmRatBN7.2
Rnor_6.02123,397,941 - 123,398,128NCBIRnor6.0
Rnor_5.02143,013,259 - 143,013,446UniSTSRnor5.0
RGSC_v3.42123,186,812 - 123,186,999UniSTSRGSC3.4
Celera2114,507,201 - 114,507,388UniSTS
RH 3.4 Map2673.4UniSTS
Cytogenetic Map2q25UniSTS
RH144026  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,481,538 - 119,481,642 (+)MAPPERmRatBN7.2
Rnor_6.02123,330,180 - 123,330,283NCBIRnor6.0
Rnor_5.02142,945,535 - 142,945,638UniSTSRnor5.0
RGSC_v3.42123,117,319 - 123,117,422UniSTSRGSC3.4
Celera2114,439,569 - 114,439,672UniSTS
RH 3.4 Map2675.3UniSTS
Cytogenetic Map2q25UniSTS
BE116826  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,496,187 - 119,496,392 (+)MAPPERmRatBN7.2
Rnor_6.02123,344,829 - 123,345,033NCBIRnor6.0
Rnor_5.02142,960,184 - 142,960,388UniSTSRnor5.0
RGSC_v3.42123,132,341 - 123,132,545UniSTSRGSC3.4
Celera2114,454,216 - 114,454,420UniSTS
RH 3.4 Map2673.4UniSTS
Cytogenetic Map2q25UniSTS
RH139923  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,499,847 - 119,500,049 (+)MAPPERmRatBN7.2
Rnor_6.02123,348,489 - 123,348,690NCBIRnor6.0
Rnor_5.02142,963,844 - 142,964,045UniSTSRnor5.0
RGSC_v3.42123,136,001 - 123,136,202UniSTSRGSC3.4
Celera2114,457,934 - 114,458,135UniSTS
RH 3.4 Map2676.5UniSTS
Cytogenetic Map2q25UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1581552Pur12Proteinuria QTL 125.190.0009total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1354594Despr10Despair related QTL 100.00000249locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527143657569Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527143657569Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2118111229149559726Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat


Genetic Models
This gene Trpc3 is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:60
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000046700
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 43 5
Low 2 43 9 13 8 9 29 35 33 11 8
Below cutoff 1 23 16 6 16 2 2 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000046700   ⟹   ENSRNOP00000046270
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2119,481,400 - 119,547,707 (-)Ensembl
Rnor_6.0 Ensembl2123,330,041 - 123,396,386 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079004   ⟹   ENSRNOP00000071693
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2119,481,400 - 119,529,783 (-)Ensembl
Rnor_6.0 Ensembl2123,330,705 - 123,396,147 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080207   ⟹   ENSRNOP00000075444
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2119,481,400 - 119,558,855 (-)Ensembl
Rnor_6.0 Ensembl2123,329,875 - 123,407,496 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109104   ⟹   ENSRNOP00000095733
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2119,481,400 - 119,547,707 (-)Ensembl
RefSeq Acc Id: NM_021771   ⟹   NP_068539
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22119,481,400 - 119,547,728 (-)NCBI
Rnor_6.02123,330,041 - 123,396,386 (-)NCBI
Rnor_5.02142,945,309 - 143,022,844 (-)NCBI
RGSC_v3.42123,117,180 - 123,184,016 (-)RGD
Celera2114,439,430 - 114,505,661 (-)RGD
Sequence:
RefSeq Acc Id: XM_006232282   ⟹   XP_006232344
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22119,481,313 - 119,547,750 (-)NCBI
Rnor_6.02123,329,954 - 123,396,402 (-)NCBI
Rnor_5.02142,945,309 - 143,022,844 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760941   ⟹   XP_008759163
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22119,481,313 - 119,547,750 (-)NCBI
Rnor_6.02123,329,954 - 123,396,403 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591064   ⟹   XP_017446553
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22119,481,313 - 119,619,333 (-)NCBI
Rnor_6.02123,329,954 - 123,467,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039103014   ⟹   XP_038958942
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22119,481,313 - 119,547,750 (-)NCBI
RefSeq Acc Id: XM_039103015   ⟹   XP_038958943
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22119,481,313 - 119,558,823 (-)NCBI
RefSeq Acc Id: XM_039103016   ⟹   XP_038958944
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22119,485,232 - 119,547,750 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_068539   ⟸   NM_021771
- UniProtKB: F1LNQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232344   ⟸   XM_006232282
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008759163   ⟸   XM_008760941
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017446553   ⟸   XM_017591064
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000071693   ⟸   ENSRNOT00000079004
RefSeq Acc Id: ENSRNOP00000075444   ⟸   ENSRNOT00000080207
RefSeq Acc Id: ENSRNOP00000046270   ⟸   ENSRNOT00000046700
RefSeq Acc Id: XP_038958943   ⟸   XM_039103015
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038958942   ⟸   XM_039103014
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958944   ⟸   XM_039103016
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000095733   ⟸   ENSRNOT00000109104

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JMI9-F1-model_v2 AlphaFold Q9JMI9 1-836 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691293
Promoter ID:EPDNEW_R1818
Type:single initiation site
Name:Trpc3_1
Description:transient receptor potential cation channel, subfamily C, member3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02123,396,362 - 123,396,422EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
2 123362404 123362405 G A snv LEW/Crl (RGD)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
2 142993452 142993453 C T snv DOB/Oda (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61973 AgrOrtholog
BioCyc Gene G2FUF-53314 BioCyc
Ensembl Genes ENSRNOG00000016070 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000046270 ENTREZGENE
  ENSRNOP00000046270.5 UniProtKB/Swiss-Prot
  ENSRNOP00000071693.2 UniProtKB/TrEMBL
  ENSRNOP00000075444 ENTREZGENE
  ENSRNOP00000075444.2 UniProtKB/TrEMBL
  ENSRNOP00000095733 ENTREZGENE
  ENSRNOP00000095733.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046700 ENTREZGENE
  ENSRNOT00000046700.6 UniProtKB/Swiss-Prot
  ENSRNOT00000079004.2 UniProtKB/TrEMBL
  ENSRNOT00000080207 ENTREZGENE
  ENSRNOT00000080207.2 UniProtKB/TrEMBL
  ENSRNOT00000109104 ENTREZGENE
  ENSRNOT00000109104.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPC3_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPC_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:60395 UniProtKB/Swiss-Prot
NCBI Gene 60395 ENTREZGENE
PANTHER PTHR10117 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10117:SF8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trpc3 PhenoGen
PRINTS TRNSRECEPTRP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPCHANNEL3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC233512
UniProt A0A0G2K143_RAT UniProtKB/TrEMBL
  A0A0G2KAL8_RAT UniProtKB/TrEMBL
  A0A8I6B383_RAT UniProtKB/TrEMBL
  F1LNQ7 ENTREZGENE
  G1FBS2_RAT UniProtKB/TrEMBL
  Q9JMI9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary F1LNQ7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Trpc3  transient receptor potential cation channel, subfamily C, member 3    transient receptor protein 3   Name updated 1299863 APPROVED
2002-06-10 Trpc3  transient receptor protein 3       Name updated 70584 APPROVED
2001-12-06 Trpc3  transient receptor protein 3      Symbol updated to reflect Human and Mouse nomenclature 69665 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_transcript alternatively spliced form of a rat Trp3 exists which is designated Trp3sv 61774