Actl6a (actin-like 6A) - Rat Genome Database

Name: Actl6a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Actl6a (actin-like 6A) Rattus norvegicus

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Symbol:

Actl6a

Name:

actin-like 6A

RGD ID:

1307747

Description:

Predicted to enable chromatin binding activity. Involved in spinal cord development. Predicted to be located in nucleoplasm and plasma membrane. Predicted to be part of chromatin. Orthologous to human ACTL6A (actin like 6A); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; INO80 family mediated chromatin remodeling pathway; pancreatic cancer pathway; INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bis(2-ethylhexyl) phthalate.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

actin-like protein 6A; LOC361925; MGC112664; RGD1307747; similar to BAF53a

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ACTL6A (actin like 6A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Actl6a (actin-like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Actl6a (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ACTL6A (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ACTL6A (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Actl6a (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ACTL6A (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ACTL6A (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Actl6a (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ACTL6B (actin like 6B)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Actl6a (actin-like 6A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ACTL6A (actin like 6A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	actl6a (actin-like 6A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ARP4	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Bap55	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	swsn-6	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ARP7	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	actl6a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,413,206 - 117,436,758 (+)	NCBI		GRCr8
mRatBN7.2	2	115,492,374 - 115,508,401 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,492,285 - 115,508,401 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	122,099,074 - 122,115,087 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	120,211,707 - 120,227,720 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,913,766 - 114,929,792 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	119,112,776 - 119,128,870 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	119,112,513 - 119,129,751 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	138,764,113 - 138,780,207 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	118,919,542 - 118,935,591 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	118,864,447 - 118,880,186 (+)	NCBI
Celera	2	110,595,992 - 110,611,991 (+)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial heart septal defect (ISO)

cervical dystonia (ISO)

Currarino syndrome (ISO)

Developmental Disabilities (ISO)

gastroesophageal reflux disease (ISO)

genetic disease (ISO)

inguinal hernia (ISO)

Spina Bifida Cystica (IEP)

Syncope (ISO)

syndromic microphthalmia 3 (ISO)

umbilical hernia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

DDE (ISO)

dextran sulfate (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

doxorubicin (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

geraniol (ISO)

ivermectin (ISO)

lead(0) (ISO)

methimazole (EXP)

nickel atom (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

pentachlorophenol (ISO)

picoxystrobin (ISO)

rotenone (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst formation (ISO)

chromatin remodeling (IBA,ISO)

nervous system development (IBA,ISO)

neural retina development (ISO)

positive regulation of DNA repair (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of double-strand break repair via homologous recombination (ISO)

positive regulation of telomere maintenance in response to DNA damage (ISO)

regulation of cell cycle (ISO)

regulation of chromosome organization (ISO)

regulation of DNA repair (ISO)

regulation of DNA replication (ISO)

regulation of DNA strand elongation (ISO)

regulation of embryonic development (ISO)

regulation of transcription by RNA polymerase II (IBA)

spinal cord development (IEP)

telomere maintenance (ISO)

Cellular Component

Ino80 complex (ISO)

npBAF complex (ISO)

NuA4 histone acetyltransferase complex (IBA,ISO)

nucleoplasm (IEA,ISO)

nucleosome (ISO)

nucleus (ISO)

plasma membrane (IEA,ISO)

SWI/SNF complex (IBA,ISO)

Molecular Function

chromatin binding (IBA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

altered SWI/SNF family mediated chromatin remodeling pathway (ISO)

INO80 family mediated chromatin remodeling pathway (ISO)

pancreatic cancer pathway (ISO)

SWI/SNF family mediated chromatin remodeling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ATP-dependent chromatin remodeling: genetics, genomics and mechanisms.	Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation
8.	The spectrum of SWI/SNF mutations, ubiquitous in human cancers.	Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.
9.	The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics.	Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
10.	miR-9*- and miR-124a-Mediated switching of chromatin remodelling complexes is altered in rat spina bifida aperta.	Wei X, etal., Neurochem Res. 2013 Aug;38(8):1605-15. doi: 10.1007/s11064-013-1062-8. Epub 2013 May 16.

Additional References at PubMed

PMID:8804307	PMID:9845365	PMID:10966108	PMID:11078522	PMID:11726552	PMID:12437990	PMID:12477932	PMID:14966270	PMID:16217013	PMID:17640523	PMID:18026119	PMID:18816825
PMID:21303910	PMID:23785148	PMID:24335282	PMID:24912190	PMID:27869233	PMID:29374058

Genomics

Comparative Map Data

Actl6a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,413,206 - 117,436,758 (+)	NCBI		GRCr8
mRatBN7.2	2	115,492,374 - 115,508,401 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,492,285 - 115,508,401 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	122,099,074 - 122,115,087 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	120,211,707 - 120,227,720 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,913,766 - 114,929,792 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	119,112,776 - 119,128,870 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	119,112,513 - 119,129,751 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	138,764,113 - 138,780,207 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	118,919,542 - 118,935,591 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	118,864,447 - 118,880,186 (+)	NCBI
Celera	2	110,595,992 - 110,611,991 (+)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

ACTL6A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	179,562,926 - 179,588,407 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	179,562,886 - 179,588,407 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	179,280,714 - 179,306,195 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	180,763,402 - 180,788,887 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	177,711,580 - 177,737,071 (+)	NCBI		Celera
Cytogenetic Map	3	q26.33	NCBI
HuRef	3	176,684,454 - 176,709,974 (+)	NCBI		HuRef
CHM1_1	3	179,243,818 - 179,269,292 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	182,366,765 - 182,392,246 (+)	NCBI		T2T-CHM13v2.0

Actl6a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	32,762,695 - 32,781,122 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	32,760,447 - 32,781,122 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	32,708,546 - 32,726,973 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	32,706,298 - 32,726,973 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	32,607,468 - 32,625,893 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	32,900,275 - 32,918,508 (+)	NCBI		MGSCv36	mm8
Celera	3	32,619,883 - 32,637,848 (+)	NCBI		Celera
Cytogenetic Map	3	A3	NCBI
cM Map	3	15.83	NCBI

Actl6a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	8,744,597 - 8,764,993 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	8,745,390 - 8,764,993 (+)	NCBI	ChiLan1.0	ChiLan1.0

ACTL6A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	177,431,312 - 177,456,763 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	177,436,029 - 177,461,480 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	176,595,149 - 176,620,556 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	184,765,523 - 184,790,983 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	184,765,523 - 184,790,983 (+)	Ensembl	panpan1.1		panPan2

ACTL6A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	12,922,506 - 12,988,334 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	12,960,699 - 12,987,962 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	17,102,646 - 17,130,954 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	12,858,403 - 12,886,719 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	12,858,452 - 12,886,712 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	12,909,490 - 12,937,878 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	12,891,830 - 12,920,136 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	13,132,262 - 13,160,666 (+)	NCBI		UU_Cfam_GSD_1.0

Actl6a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	109,633,516 - 109,643,329 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936566	3,573,974 - 3,595,534 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936566	3,577,412 - 3,587,182 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACTL6A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	117,598,496 - 117,628,488 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	117,598,415 - 117,627,311 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	126,692,861 - 126,721,737 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACTL6A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	9,838,609 - 9,863,439 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	9,837,274 - 9,863,430 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	18,710,043 - 18,735,082 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Actl6a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	57,305,053 - 57,337,797 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	57,305,105 - 57,337,653 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Actl6a
26 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	34
Interacting mature miRNAs:	39
Transcripts:	ENSRNOT00000015460
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	102803808	147803808	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1598865	Bp296	Blood pressure QTL 296	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	81018907	126018907	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1578772	Stresp14	Stress response QTL 14	5	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	2	82345893	130923501	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	38573329	122609194	Rat
1598862	Glom9	Glomerulus QTL 9	3.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	2	92337601	137337601	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	76539322	150540526	Rat
1598863	Cm65	Cardiac mass QTL 65	2.3		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	92337601	137337601	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
2300165	Bmd49	Bone mineral density QTL 49	4.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	2	88862519	133862519	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
2300170	Bmd45	Bone mineral density QTL 45	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	2	88862519	133862519	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	143657569	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	104559726	149559726	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26917817	136917119	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	78665616	143657569	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
2300185	Bmd46	Bone mineral density QTL 46	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	88862519	133862519	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
61392	Bp6	Blood pressure QTL 6	7		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	80270434	125270434	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	112103657	148076632	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
7207808	Bmd89	Bone mineral density QTL 89	4.1		femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	2	88862519	133862519	Rat
1558648	Smcn1	Smooth muscle cell number QTL 1		0.039	blood vessel smooth muscle cell quantity (VT:0010525)	aorta smooth muscle cell count per unit vessel length (CMO:0001646)	2	59134147	127460910	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	114654253	159654253	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	59324377	141596857	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	127469484	Rat

Markers in Region

RH130746

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	115,508,407 - 115,508,588 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	119,128,877 - 119,129,057	NCBI	Rnor6.0
Rnor_5.0	2	138,780,214 - 138,780,394	UniSTS	Rnor5.0
RGSC_v3.4	2	118,935,598 - 118,935,778	UniSTS	RGSC3.4
Celera	2	110,611,998 - 110,612,178	UniSTS
RH 3.4 Map	2	686.4	UniSTS
Cytogenetic Map	2	q25	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC098698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015460 ⟹ ENSRNOP00000015460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	115,492,285 - 115,508,401 (+)	Ensembl
Rnor_6.0 Ensembl	2	119,112,513 - 119,129,751 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098294 ⟹ ENSRNOP00000096390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	115,494,168 - 115,508,401 (+)	Ensembl

RefSeq Acc Id:

NM_001039033 ⟹ NP_001034122

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,420,731 - 117,436,758 (+)	NCBI
mRatBN7.2	2	115,492,374 - 115,508,401 (+)	NCBI
Rnor_6.0	2	119,112,776 - 119,128,870 (+)	NCBI
Rnor_5.0	2	138,764,113 - 138,780,207 (+)	NCBI
RGSC_v3.4	2	118,919,542 - 118,935,591 (+)	RGD
Celera	2	110,595,992 - 110,611,991 (+)	RGD

Sequence:

show sequence

TCTTGGGGAGTCGAGTCGCGCCGCTGTTATCTTTCGCCCAGTAGTCTTCGGCCAGTCCCCGCCC
AACAGTAGCTATGAGCGGCGGCGTGTACGGCGGAGATGAAGTTGGCGCTCTTGTTTTTGACATT
GGATCATATACAGTGAGGGCTGGCTATGCTGGTGAGGACTGCCCTAAGGTTGATTTCCCCACGG
CTATCGGGGTGGTGCTGGAGAGAGATGATGGAAGCACGATGATGGAGATCGATGGTGACAAAGG
CAAGCAGGGCGGGCCCACCTACTACATAGACACCAATGCCCTCCGAGTGCCCAGGGAGAGCATG
GAAGCCATCTCACCGCTCAAGAATGGCATGGTTGAAGACTGGGATAGTTTCCAGGCCATTTTGG
ATCATACATACAAGATGCATGTCAAATCTGAAGCCAGTCTGCATCCTGTTCTCATGTCGGAAGC
ACCGTGGAACACCAGGGCAAAGAGAGAGAAACTGACAGAGTTGATGTTTGAGCACTACAGCATC
CCTGCATTCTTCCTTTGCAAAACTGCAGTTTTGACGGCATTTGCTAATGGTCGTTCTACTGGGC
TGATATTGGACAGTGGAGCTACCCACACCACTGCGATTCCAGTCCATGATGGCTACGTCCTTCA
ACAAGGCATTGTGAAATCCCCTCTTGCTGGAGACTTCATTACCATGCAGTGCAGAGAACTCTTC
CAGGAAATGAACATAGAACTCATCCCTCCTTATATGATTGCATCAAAAGAGGCTGTTCGAGAAG
GCTCTCCAGCCAACTGGAAAAGGAAAGAGAAACTGCCCCAGGTTACAAGGTCTTGGCATAATTA
CATGTGCAACTGCGTCATCCAAGATTTTCAAGCTTCCGTCCTTCAAGTGTCAGACTCCACCTAT
GACGAACAAGTGGCTGCACAGATGCCCACTGTTCACTATGAATTCCCTAATGGCTACAACTGCG
ATTTTGGTGCAGAGCGGCTGAAAATTCCTGAAGGATTATTTGACCCTTCCAACGTAAAGGGACT
ATCTGGGAACACAATGCTGGGAGTCAGTCACGTTGTCACAACAAGTGTTGGAATGTGTGACATT
GACATCAGACCAGGTCTCTATGGCAGTGTGATCGTAGCAGGAGGAAACACCTTAATACAGAGTT
TCACGGATAGGTTAAATAGAGAGCTTTCTCAGAAAACTCCGCCGAGTATGCGGTTGAAACTGAT
TGCAAACAACACGACGGTGGAGCGGAGGTTCAGCTCGTGGATCGGCGGCTCCATCCTAGCATCT
TTGGGTACCTTTCAACAGATGTGGATTTCCAAACAGGAATATGAAGAAGGAGGGAAGCAGTGTG
TAGAAAGAAAATGCCCTTGAGGGCTCCACCCTGCCTGCCCATCACCTCACGTCTGTAGCTTTAG
GACACTCAGGAAAAGATGACCATCTTTTGTAGAATGTTTATACATGTTTGCATATTTCAATTTC
CACTTAAATTTTTTAAGGCTTTAACTGGCTCTATAAATTAAATGAGTTTGTGCTTTCCTTGAGA
TGCACTTATTCTTATTACAGGCATTTTATAATTTTGTATGAATGTCTATTTTCTCTAAATATTT
TGCTTTCAGTAAGTACTTTCCAGCTCTCCTGTGGGTTGGTGGAATTACTCTTTATTGACTAGTA
AAAGTTACTGCCTATGCTTTTTACCTTAGGCTTACAAAATTAAATAAAAATCACTACTGTCCTA
AAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232253 ⟹ XP_006232315

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,421,161 - 117,436,758 (+)	NCBI
mRatBN7.2	2	115,492,798 - 115,508,401 (+)	NCBI
Rnor_6.0	2	119,113,203 - 119,128,870 (+)	NCBI
Rnor_5.0	2	138,764,113 - 138,780,207 (+)	NCBI

Sequence:

show sequence

CTCGGGAAGCTCGCGGAGGTTCCGGGCCCTCCGGGTGGGCACTGGTTCTGAGTCGCGCCCGGTG
TTGCGGCTTCCGACTGGACATCGTTCCAGGTGTGCCTGGTCCCTAGATGAGCGGAGCGTTGAGA
TGAAGTTGGCGCTCTTGTTTTTGACATTGGATCATATACAGTGAGGGCTGGCTATGCTGGTGAG
GACTGCCCTAAGGTTGATTTCCCCACGGCTATCGGGGTGGTGCTGGAGAGAGATGATGGAAGCA
CGATGATGGAGATCGATGGTGACAAAGGCAAGCAGGGCGGGCCCACCTACTACATAGACACCAA
TGCCCTCCGAGTGCCCAGGGAGAGCATGGAAGCCATCTCACCGCTCAAGAATGGCATGGTTGAA
GACTGGGATAGTTTCCAGGCCATTTTGGATCATACATACAAGATGCATGTCAAATCTGAAGCCA
GTCTGCATCCTGTTCTCATGTCGGAAGCACCGTGGAACACCAGGGCAAAGAGAGAGAAACTGAC
AGAGTTGATGTTTGAGCACTACAGCATCCCTGCATTCTTCCTTTGCAAAACTGCAGTTTTGACG
GCATTTGCTAATGGTCGTTCTACTGGGCTGATATTGGACAGTGGAGCTACCCACACCACTGCGA
TTCCAGTCCATGATGGCTACGTCCTTCAACAAGGCATTGTGAAATCCCCTCTTGCTGGAGACTT
CATTACCATGCAGTGCAGAGAACTCTTCCAGGAAATGAACATAGAACTCATCCCTCCTTATATG
ATTGCATCAAAAGAGGCTGTTCGAGAAGGCTCTCCAGCCAACTGGAAAAGGAAAGAGAAACTGC
CCCAGGTTACAAGGTCTTGGCATAATTACATGTGCAACTGCGTCATCCAAGATTTTCAAGCTTC
CGTCCTTCAAGTGTCAGACTCCACCTATGACGAACAAGTGGCTGCACAGATGCCCACTGTTCAC
TATGAATTCCCTAATGGCTACAACTGCGATTTTGGTGCAGAGCGGCTGAAAATTCCTGAAGGAT
TATTTGACCCTTCCAACGTAAAGGGACTATCTGGGAACACAATGCTGGGAGTCAGTCACGTTGT
CACAACAAGTGTTGGAATGTGTGACATTGACATCAGACCAGGTCTCTATGGCAGTGTGATCGTA
GCAGGAGGAAACACCTTAATACAGAGTTTCACGGATAGGTTAAATAGAGAGCTTTCTCAGAAAA
CTCCGCCGAGTATGCGGTTGAAACTGATTGCAAACAACACGACGGTGGAGCGGAGGTTCAGCTC
GTGGATCGGCGGCTCCATCCTAGCATCTTTGGGTACCTTTCAACAGATGTGGATTTCCAAACAG
GAATATGAAGAAGGAGGGAAGCAGTGTGTAGAAAGAAAATGCCCTTGAGGGCTCCACCCTGCCT
GCCCATCACCTCACGTCTGTAGCTTTAGGACACTCAGGAAAAGATGACCATCTTTTGTAGAATG
TTTATACATGTTTGCATATTTCAATTTCCACTTAAATTTTTTAAGGCTTTAACTGGCTCTATAA
ATTAAATGAGTTTGTGCTTTCCTTGAGATGCACTTATTCTTATTACAGGCATTTTATAATTTTG
TATGAATGTCTATTTTCTCTAAATATTTTGCTTTCAGTAAGTACTTTCCAGCTCTCCTGTGGGT
TGGTGGAATTACTCTTTATTGACTAGTAAAAGTTACTGCCTATGCTTTTTACCTTAGGCTTACA
AAATTAAATAAAAATCACTACTGTCCTAAAA

hide sequence

RefSeq Acc Id:

XM_063282052 ⟹ XP_063138122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,413,206 - 117,436,758 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001034122	(Get FASTA)	NCBI Sequence Viewer
	XP_006232315	(Get FASTA)	NCBI Sequence Viewer
	XP_063138122	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98698	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015460.6
	ENSRNOP00000096390.1

RefSeq Acc Id:

NP_001034122 ⟸ NM_001039033

- UniProtKB:

Q4KM87 (UniProtKB/TrEMBL), D3ZJJ2 (UniProtKB/TrEMBL), A0A8I6AT89 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGGVYGGDEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGVVLERDDGSTMMEIDGDKGKQG
GPTYYIDTNALRVPRESMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWN
TRAKREKLTELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGI
VKSPLAGDFITMQCRELFQEMNIELIPPYMIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCN
CVIQDFQASVLQVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGN
TMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANN
TTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKCP

hide sequence

RefSeq Acc Id:	XP_006232315 ⟸ XM_006232253
- Peptide Label:	isoform X1
- UniProtKB:	A6IHQ2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMEIDGDKGKQGGPTYYIDTNALRVPRESMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEAS LHPVLMSEAPWNTRAKREKLTELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAI PVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELIPPYMIASKEAVREGSPANWKRKEKLP QVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGL FDPSNVKGLSGNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKT PPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKCP hide sequence

Ensembl Acc Id:

ENSRNOP00000015460 ⟸ ENSRNOT00000015460

Ensembl Acc Id:

ENSRNOP00000096390 ⟸ ENSRNOT00000098294

RefSeq Acc Id:	XP_063138122 ⟸ XM_063282052
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KM87-F1-model_v2	AlphaFold	Q4KM87	1-429	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691280

Promoter ID:

EPDNEW_R1805

Type:

initiation region

Name:

Actl6a_1

Description:

actin-like 6A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	119,112,690 - 119,112,750	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307747	AgrOrtholog
BioCyc Gene	G2FUF-53419	BioCyc
Ensembl Genes	ENSRNOG00000011553	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015460.8	UniProtKB/TrEMBL
	ENSRNOT00000098294.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.420.40	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7386860	IMAGE-MGC_LOAD
InterPro	Actin-like	UniProtKB/TrEMBL
	Actin_CS	UniProtKB/TrEMBL
	ATPase_NBD	UniProtKB/TrEMBL
KEGG Report	rno:361925	UniProtKB/TrEMBL
MGC_CLONE	MGC:112664	IMAGE-MGC_LOAD
NCBI Gene	361925	ENTREZGENE
PANTHER	ACTIN-LIKE PROTEIN 6A	UniProtKB/TrEMBL
	Actin_like	UniProtKB/TrEMBL
Pfam	Actin	UniProtKB/TrEMBL
PhenoGen	Actl6a	PhenoGen
PRINTS	ACTIN	UniProtKB/TrEMBL
PROSITE	ACTINS_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011553	RatGTEx
SMART	ACTIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53067	UniProtKB/TrEMBL
UniProt	A0A8I6AT89	ENTREZGENE, UniProtKB/TrEMBL
	A6IHQ2	ENTREZGENE, UniProtKB/TrEMBL
	D3ZJJ2	ENTREZGENE
	Q4KM87	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	D3ZJJ2	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Actl6a	actin-like 6A	RGD1307747	similar to BAF53a	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1307747	similar to BAF53a	RGD1307747_predicted	similar to BAF53a (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1307747_predicted	similar to BAF53a (predicted)	LOC361925_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361925_predicted	similar to BAF53a (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

RGD Manual Annotations