RGD Reference Report - The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics. - Rat Genome Database

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The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics.

Authors: Watanabe, S  Peterson, CL 
Citation: Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
RGD ID: 9495926
Pubmed: PMID:21502417   (View Abstract at PubMed)
DOI: DOI:10.1101/sqb.2010.75.063   (Journal Full-text)

The evolutionarily conserved INO80 family of ATP-dependent chromatin-remodeling enzymes has roles in many nuclear processes, including transcription, DNA repair, and DNA replication. Here, we discuss the in vivo and in vitro properties of these enzymes, focusing on recent studies which suggest that members of this family govern the deposition and removal of the histone variant H2A.Z.



Molecular Pathway Annotations    Click to see Annotation Detail View

RGD Manual Annotations


  
Object SymbolSpeciesTermQualifierEvidenceWithNotesSourceOriginal Reference(s)
ACTBHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
ACTL6AHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
ACTR5HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
ACTR6HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
ACTR8HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
ActbRatINO80 family mediated chromatin remodeling pathway  ISOACTB (Homo sapiens) RGD 
ActbMouseINO80 family mediated chromatin remodeling pathway  ISOACTB (Homo sapiens) RGD 
Actl6aRatINO80 family mediated chromatin remodeling pathway  ISOACTL6A (Homo sapiens) RGD 
Actl6aMouseINO80 family mediated chromatin remodeling pathway  ISOACTL6A (Homo sapiens) RGD 
Actr5RatINO80 family mediated chromatin remodeling pathway  ISOACTR5 (Homo sapiens) RGD 
Actr5MouseINO80 family mediated chromatin remodeling pathway  ISOACTR5 (Homo sapiens) RGD 
Actr6RatINO80 family mediated chromatin remodeling pathway  ISOACTR6 (Homo sapiens) RGD 
Actr6MouseINO80 family mediated chromatin remodeling pathway  ISOACTR6 (Homo sapiens) RGD 
Actr8RatINO80 family mediated chromatin remodeling pathway  ISOACTR8 (Homo sapiens) RGD 
Actr8MouseINO80 family mediated chromatin remodeling pathway  ISOACTR8 (Homo sapiens) RGD 
BRD8HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Brd8RatINO80 family mediated chromatin remodeling pathway  ISOBRD8 (Homo sapiens) RGD 
Brd8MouseINO80 family mediated chromatin remodeling pathway  ISOBRD8 (Homo sapiens) RGD 
DMAP1HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Dmap1RatINO80 family mediated chromatin remodeling pathway  ISODMAP1 (Homo sapiens) RGD 
Dmap1MouseINO80 family mediated chromatin remodeling pathway  ISODMAP1 (Homo sapiens) RGD 
EP400HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
EPC1HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
EPC2HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Ep400RatINO80 family mediated chromatin remodeling pathway  ISOEP400 (Homo sapiens) RGD 
Ep400MouseINO80 family mediated chromatin remodeling pathway  ISOEP400 (Homo sapiens) RGD 
Epc1MouseINO80 family mediated chromatin remodeling pathway  ISOEPC1 (Homo sapiens) RGD 
Epc1RatINO80 family mediated chromatin remodeling pathway  ISOEPC1 (Homo sapiens) RGD 
Epc2RatINO80 family mediated chromatin remodeling pathway  ISOEPC2 (Homo sapiens) RGD 
Epc2MouseINO80 family mediated chromatin remodeling pathway  ISOEPC2 (Homo sapiens) RGD 
ING3HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
INO80HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
INO80BHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
INO80CHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
INO80DHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
INO80EHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Ing3RatINO80 family mediated chromatin remodeling pathway  ISOING3 (Homo sapiens) RGD 
Ing3MouseINO80 family mediated chromatin remodeling pathway  ISOING3 (Homo sapiens) RGD 
Ino80RatINO80 family mediated chromatin remodeling pathway  ISOINO80 (Homo sapiens) RGD 
Ino80MouseINO80 family mediated chromatin remodeling pathway  ISOINO80 (Homo sapiens) RGD 
Ino80bMouseINO80 family mediated chromatin remodeling pathway  ISOINO80B (Homo sapiens) RGD 
Ino80bRatINO80 family mediated chromatin remodeling pathway  ISOINO80B (Homo sapiens) RGD 
Ino80cRatINO80 family mediated chromatin remodeling pathway  ISOINO80C (Homo sapiens) RGD 
Ino80cMouseINO80 family mediated chromatin remodeling pathway  ISOINO80C (Homo sapiens) RGD 
Ino80dRatINO80 family mediated chromatin remodeling pathway  ISOINO80D (Homo sapiens) RGD 
Ino80dMouseINO80 family mediated chromatin remodeling pathway  ISOINO80D (Homo sapiens) RGD 
Ino80eRatINO80 family mediated chromatin remodeling pathway  ISOINO80E (Homo sapiens) RGD 
Ino80eMouseINO80 family mediated chromatin remodeling pathway  ISOINO80E (Homo sapiens) RGD 
KAT5HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Kat5RatINO80 family mediated chromatin remodeling pathway  ISOKAT5 (Homo sapiens) RGD 
Kat5MouseINO80 family mediated chromatin remodeling pathway  ISOKAT5 (Homo sapiens) RGD 
MCRS1HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
MEAF6HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
MORF4L1HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
MORF4L2HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
MRGBPHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Mcrs1RatINO80 family mediated chromatin remodeling pathway  ISOMCRS1 (Homo sapiens) RGD 
Mcrs1MouseINO80 family mediated chromatin remodeling pathway  ISOMCRS1 (Homo sapiens) RGD 
Meaf6RatINO80 family mediated chromatin remodeling pathway  ISOMEAF6 (Homo sapiens) RGD 
Meaf6MouseINO80 family mediated chromatin remodeling pathway  ISOMEAF6 (Homo sapiens) RGD 
Morf4l1MouseINO80 family mediated chromatin remodeling pathway  ISOMORF4L1 (Homo sapiens) RGD 
Morf4l2RatINO80 family mediated chromatin remodeling pathway  ISOMORF4L2 (Homo sapiens) RGD 
Morf4l2MouseINO80 family mediated chromatin remodeling pathway  ISOMORF4L2 (Homo sapiens) RGD 
MrgbpMouseINO80 family mediated chromatin remodeling pathway  ISOMRGBP (Homo sapiens) RGD 
NFRKBHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
NfrkbRatINO80 family mediated chromatin remodeling pathway  ISONFRKB (Homo sapiens) RGD 
NfrkbMouseINO80 family mediated chromatin remodeling pathway  ISONFRKB (Homo sapiens) RGD 
RUVBL1HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
RUVBL2HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Ruvbl1RatINO80 family mediated chromatin remodeling pathway  ISORUVBL1 (Homo sapiens) RGD 
Ruvbl1MouseINO80 family mediated chromatin remodeling pathway  ISORUVBL1 (Homo sapiens) RGD 
Ruvbl2RatINO80 family mediated chromatin remodeling pathway  ISORUVBL2 (Homo sapiens) RGD 
Ruvbl2MouseINO80 family mediated chromatin remodeling pathway  ISORUVBL2 (Homo sapiens) RGD 
SRCAPHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
SrcapRatINO80 family mediated chromatin remodeling pathway  ISOSRCAP (Homo sapiens) RGD 
SrcapMouseINO80 family mediated chromatin remodeling pathway  ISOSRCAP (Homo sapiens) RGD 
TFPTHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
TRRAPHumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
TfptRatINO80 family mediated chromatin remodeling pathway  ISOTFPT (Homo sapiens) RGD 
TfptMouseINO80 family mediated chromatin remodeling pathway  ISOTFPT (Homo sapiens) RGD 
TrrapRatINO80 family mediated chromatin remodeling pathway  ISOTRRAP (Homo sapiens) RGD 
TrrapMouseINO80 family mediated chromatin remodeling pathway  ISOTRRAP (Homo sapiens) RGD 
UCHL5HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Uchl5RatINO80 family mediated chromatin remodeling pathway  ISOUCHL5 (Homo sapiens) RGD 
Uchl5MouseINO80 family mediated chromatin remodeling pathway  ISOUCHL5 (Homo sapiens) RGD 
VPS72HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Vps72RatINO80 family mediated chromatin remodeling pathway  ISOVPS72 (Homo sapiens) RGD 
Vps72MouseINO80 family mediated chromatin remodeling pathway  ISOVPS72 (Homo sapiens) RGD 
YEATS4HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
YY1HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Yeats4RatINO80 family mediated chromatin remodeling pathway  ISOYEATS4 (Homo sapiens) RGD 
Yeats4MouseINO80 family mediated chromatin remodeling pathway  ISOYEATS4 (Homo sapiens) RGD 
Yy1RatINO80 family mediated chromatin remodeling pathway  ISOYY1 (Homo sapiens) RGD 
Yy1MouseINO80 family mediated chromatin remodeling pathway  ISOYY1 (Homo sapiens) RGD 
ZNHIT1HumanINO80 family mediated chromatin remodeling pathway  TAS  RGD 
Znhit1MouseINO80 family mediated chromatin remodeling pathway  ISOZNHIT1 (Homo sapiens) RGD 
Znhit1RatINO80 family mediated chromatin remodeling pathway  ISOZNHIT1 (Homo sapiens) RGD 
Objects Annotated

Genes (Rattus norvegicus)
Actb  (actin, beta)
Actl6a  (actin-like 6A)
Actr5  (actin related protein 5)
Actr6  (actin related protein 6)
Actr8  (actin related protein 8)
Brd8  (bromodomain containing 8)
Dmap1  (DNA methyltransferase 1-associated protein 1)
Ep400  (E1A binding protein p400)
Epc1  (enhancer of polycomb homolog 1)
Epc2  (enhancer of polycomb homolog 2)
Ing3  (inhibitor of growth family, member 3)
Ino80  (INO80 complex ATPase subunit)
Ino80b  (INO80 complex subunit B)
Ino80c  (INO80 complex subunit C)
Ino80d  (INO80 complex subunit D)
Ino80e  (INO80 complex subunit E)
Kat5  (lysine acetyltransferase 5)
Mcrs1  (microspherule protein 1)
Meaf6  (MYST/Esa1-associated factor 6)
Morf4l2  (mortality factor 4 like 2)
Nfrkb  (nuclear factor related to kappa B binding protein)
Ruvbl1  (RuvB-like AAA ATPase 1)
Ruvbl2  (RuvB-like AAA ATPase 2)
Srcap  (Snf2-related CREBBP activator protein)
Tfpt  (TCF3 fusion partner)
Trrap  (transformation/transcription domain-associated protein)
Uchl5  (ubiquitin C-terminal hydrolase L5)
Vps72  (vacuolar protein sorting 72 homolog)
Yeats4  (YEATS domain containing 4)
Yy1  (YY1 transcription factor)
Znhit1  (zinc finger, HIT-type containing 1)

Genes (Mus musculus)
Actb  (actin, beta)
Actl6a  (actin-like 6A)
Actr5  (ARP5 actin-related protein 5)
Actr6  (ARP6 actin-related protein 6)
Actr8  (ARP8 actin-related protein 8)
Brd8  (bromodomain containing 8)
Dmap1  (DNA methyltransferase 1-associated protein 1)
Ep400  (E1A binding protein p400)
Epc1  (enhancer of polycomb homolog 1)
Epc2  (enhancer of polycomb homolog 2)
Ing3  (inhibitor of growth family, member 3)
Ino80  (INO80 complex subunit)
Ino80b  (INO80 complex subunit B)
Ino80c  (INO80 complex subunit C)
Ino80d  (INO80 complex subunit D)
Ino80e  (INO80 complex subunit E)
Kat5  (K(lysine) acetyltransferase 5)
Mcrs1  (microspherule protein 1)
Meaf6  (MYST/Esa1-associated factor 6)
Morf4l1  (mortality factor 4 like 1)
Morf4l2  (mortality factor 4 like 2)
Mrgbp  (MRG/MORF4L binding protein)
Nfrkb  (nuclear factor related to kappa B binding protein)
Ruvbl1  (RuvB-like AAA ATPase 1)
Ruvbl2  (RuvB-like AAA ATPase 2)
Srcap  (Snf2-related CREBBP activator protein)
Tfpt  (TCF3 (E2A) fusion partner)
Trrap  (transformation/transcription domain-associated protein)
Uchl5  (ubiquitin carboxyl-terminal esterase L5)
Vps72  (vacuolar protein sorting 72)
Yeats4  (YEATS domain containing 4)
Yy1  (YY1 transcription factor)
Znhit1  (zinc finger, HIT domain containing 1)

Genes (Homo sapiens)
ACTB  (actin beta)
ACTL6A  (actin like 6A)
ACTR5  (actin related protein 5)
ACTR6  (actin related protein 6)
ACTR8  (actin related protein 8)
BRD8  (bromodomain containing 8)
DMAP1  (DNA methyltransferase 1 associated protein 1)
EP400  (E1A binding protein p400)
EPC1  (enhancer of polycomb homolog 1)
EPC2  (enhancer of polycomb homolog 2)
ING3  (inhibitor of growth family member 3)
INO80  (INO80 complex ATPase subunit)
INO80B  (INO80 complex subunit B)
INO80C  (INO80 complex subunit C)
INO80D  (INO80 complex subunit D)
INO80E  (INO80 complex subunit E)
KAT5  (lysine acetyltransferase 5)
MCRS1  (microspherule protein 1)
MEAF6  (MYST/Esa1 associated factor 6)
MORF4L1  (mortality factor 4 like 1)
MORF4L2  (mortality factor 4 like 2)
MRGBP  (MRG domain binding protein)
NFRKB  (nuclear factor related to kappaB binding protein)
RUVBL1  (RuvB like AAA ATPase 1)
RUVBL2  (RuvB like AAA ATPase 2)
SRCAP  (Snf2 related CREBBP activator protein)
TFPT  (TCF3 fusion partner)
TRRAP  (transformation/transcription domain associated protein)
UCHL5  (ubiquitin C-terminal hydrolase L5)
VPS72  (vacuolar protein sorting 72 homolog)
YEATS4  (YEATS domain containing 4)
YY1  (YY1 transcription factor)
ZNHIT1  (zinc finger HIT-type containing 1)


Additional Information