Actl6a (actin like 6A) - Rat Genome Database

Name: Actl6a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Actl6a (actin like 6A) Ictidomys tridecemlineatus

Analyze

Symbol:

Actl6a

Name:

actin like 6A

RGD ID:

12629181

Description:

ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN blastocyst formation (ortholog); chromatin remodeling (ortholog); spinal cord development (ortholog); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; INO80 family mediated chromatin remodeling pathway; pancreatic cancer pathway; ASSOCIATED WITH atrial heart septal defect (ortholog); cervical dystonia (ortholog); Currarino syndrome (ortholog); FOUND IN Ino80 complex (ortholog); NuA4 histone acetyltransferase complex (ortholog); nucleosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

actin-like protein 6A

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ACTL6A (actin like 6A)	NCBI	Ortholog
Mus musculus (house mouse):	Actl6a (actin-like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Actl6a (actin-like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Actl6a (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ACTL6A (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ACTL6A (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ACTL6A (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ACTL6A (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Actl6a (actin like 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	109,633,516 - 109,643,329 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936566	3,573,974 - 3,595,534 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936566	3,577,412 - 3,587,182 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial heart septal defect (ISO)

cervical dystonia (ISO)

Currarino syndrome (ISO)

Developmental Disabilities (ISO)

gastroesophageal reflux disease (ISO)

genetic disease (ISO)

inguinal hernia (ISO)

Spina Bifida Cystica (ISO)

Syncope (ISO)

syndromic microphthalmia 3 (ISO)

umbilical hernia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst formation (IEA,ISO)

chromatin remodeling (IEA,ISO)

nervous system development (IEA)

neural retina development (IEA)

positive regulation of DNA repair (IEA)

positive regulation of DNA-templated transcription (IEA)

positive regulation of double-strand break repair via homologous recombination (IEA)

positive regulation of telomere maintenance in response to DNA damage (IEA)

regulation of cell cycle (IEA)

regulation of chromosome organization (IEA)

regulation of DNA repair (IEA)

regulation of DNA replication (IEA)

regulation of DNA strand elongation (IEA)

regulation of embryonic development (IEA)

regulation of transcription by RNA polymerase II (IEA)

spinal cord development (ISO)

telomere maintenance (IEA)

Cellular Component

Ino80 complex (IEA,ISO)

npBAF complex (IEA)

NuA4 histone acetyltransferase complex (IEA,ISO)

nucleoplasm (IEA)

nucleosome (IEA,ISO)

nucleus (IEA)

plasma membrane (IEA)

SWI/SNF complex (IEA)

Molecular Function

chromatin binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

altered SWI/SNF family mediated chromatin remodeling pathway (ISO)

INO80 family mediated chromatin remodeling pathway (ISO)

pancreatic cancer pathway (ISO)

SWI/SNF family mediated chromatin remodeling pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Actl6a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	109,633,516 - 109,643,329 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936566	3,573,974 - 3,595,534 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936566	3,577,412 - 3,587,182 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACTL6A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	179,562,926 - 179,588,407 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	179,562,886 - 179,588,407 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	179,280,714 - 179,306,195 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	180,763,402 - 180,788,887 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	177,711,580 - 177,737,071 (+)	NCBI		Celera
Cytogenetic Map	3	q26.33	NCBI
HuRef	3	176,684,454 - 176,709,974 (+)	NCBI		HuRef
CHM1_1	3	179,243,818 - 179,269,292 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	182,366,765 - 182,392,246 (+)	NCBI		T2T-CHM13v2.0

Actl6a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	32,762,695 - 32,781,122 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	32,760,447 - 32,781,122 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	32,708,546 - 32,726,973 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	32,706,298 - 32,726,973 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	32,607,468 - 32,625,893 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	32,900,275 - 32,918,508 (+)	NCBI		MGSCv36	mm8
Celera	3	32,619,883 - 32,637,848 (+)	NCBI		Celera
Cytogenetic Map	3	A3	NCBI
cM Map	3	15.83	NCBI

Actl6a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,413,206 - 117,436,758 (+)	NCBI		GRCr8
mRatBN7.2	2	115,492,374 - 115,508,401 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,492,285 - 115,508,401 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	122,099,074 - 122,115,087 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	120,211,707 - 120,227,720 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,913,766 - 114,929,792 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	119,112,776 - 119,128,870 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	119,112,513 - 119,129,751 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	138,764,113 - 138,780,207 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	118,919,542 - 118,935,591 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	118,864,447 - 118,880,186 (+)	NCBI
Celera	2	110,595,992 - 110,611,991 (+)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

Actl6a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	8,744,597 - 8,764,993 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	8,745,390 - 8,764,993 (+)	NCBI	ChiLan1.0	ChiLan1.0

ACTL6A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	177,431,312 - 177,456,763 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	177,436,029 - 177,461,480 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	176,595,149 - 176,620,556 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	184,765,523 - 184,790,983 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	184,765,523 - 184,790,983 (+)	Ensembl	panpan1.1		panPan2

ACTL6A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	12,922,506 - 12,988,334 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	12,960,699 - 12,987,962 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	17,102,646 - 17,130,954 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	12,858,403 - 12,886,719 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	12,858,452 - 12,886,712 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	12,909,490 - 12,937,878 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	12,891,830 - 12,920,136 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	13,132,262 - 13,160,666 (+)	NCBI		UU_Cfam_GSD_1.0

ACTL6A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	117,598,496 - 117,628,488 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	117,598,415 - 117,627,311 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	126,692,861 - 126,721,737 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACTL6A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	9,838,609 - 9,863,439 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	9,837,274 - 9,863,430 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	18,710,043 - 18,735,082 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Actl6a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	57,305,053 - 57,337,797 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	57,305,105 - 57,337,653 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021729813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010543 ⟹ ENSSTOP00000009461

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936566	3,573,974 - 3,595,534 (-)	Ensembl

RefSeq Acc Id:

XM_021729813 ⟹ XP_021585488

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	109,633,516 - 109,643,329 (+)	NCBI
SpeTri2.0	NW_004936566	3,577,412 - 3,587,182 (-)	NCBI

Sequence:

show sequence

TACTAGAGCAAAGAGAGAGAAACTGACAGAACTAATGTTTGAACACTACAACATCCCTGCATTC
TTCCTTTGCAAAACTGCAGTTTTGACAGCATTTGCTAATGGTCGTTCTACTGGTCTGATTTTGG
ACAGTGGAGCCACTCATACCACTGCAATTCCAGTCCATGATGGCTATGTTCTTCAGCAAGGCAT
TGTGAAATCCCCTCTTGCTGGAGATTTTATTACTATGCAGTGCAGAGAACTCTTCCAAGAAATG
AACATAGAATTGATTCCTCCATATATGATTGCATCAAAAGAAGCTGTCCGTGAAGGATCTCCAG
CAAACTGGAAAAGAAAAGAGAAGTTGCCACAGGTTACAAGGTCATGGCATAACTACATGTGTAA
TTGTGTTATCCAGGATTTTCAAGCATCAGTACTTCAAGTATCAGATTCAACTTATGATGAACAA
GTAGCTGCACAGATGCCTACTGTTCATTATGAATTCCCCAATGGCTACAACTGTGATTTTGGTG
CAGAACGGTTAAAAATTCCTGAAGGCTTATTCGACCCTTCCAATGTAAAGGGGCTGTCAGGAAA
TACAATGTTAGGAGTCAGTCATGTTGTCACTACAAGTGTTGGAATGTGTGATATTGATATCAGA
CCAGGTCTGTATGGCAGTGTGATAGTGGCAGGAGGAAACACGTTAATACAGAGTTTTACTGATA
GGTTGAATAGAGAGCTTTCTCAGAAAACTCCCCCAGTAAGTACTGTTTGTTGTTCTTCATTGCT
ATTCTTCAGTGATGTGTGTACTCACTGATGGTGTAATTTATAGTAAGTGTTCATTTGTCAGTAG
GTAGGTGCTATTTTGTGTGTGCTTTGAATGCTATGGTTTAAAGCTAATATCTGTTATCTCTTGG
TTACTCTTAAATTATTTGAATCAGTATAACTCCTTAACTTTATACTTAAGTGTCAATAGTCAGG
CTCTAGGGAGACAAATTATGGTTCCTGTCCACCAAGGGCTCGTTCCGTTAGGAAGATTAGATAT
GAAAAAATTAATGACTGTATTGTGCTTAGTACTTCAGTATTCCTGGAATCAAGTGCTCTTTTGA
ACACTAAGAAGCAAGTACTTAACTCTTTAGGAGTATCAGAGGAAAGCTTTATAAAGAAGCTGTT
ATTTGAATGAAGAGAAGTTCAAGTGGTTGCTAATTTATGAAAGGACATATAGGTGGAGAGACTT
CCATGTGCAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_021585488	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009461.3
GenBank Protein	KAG3271033	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021585488 ⟸ XM_021729813

- Sequence:

show sequence

MFEHYNIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFIT
MQCRELFQEMNIELIPPYMIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVL
QVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTT
SVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPVSTVCCSSLLFFSDVCTH

hide sequence

RefSeq Acc Id:

ENSSTOP00000009461 ⟸ ENSSTOT00000010543

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010540	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010543.3	UniProtKB/TrEMBL
Gene3D-CATH	3.30.420.40	UniProtKB/TrEMBL
InterPro	Actin	UniProtKB/TrEMBL
	Actin_CS	UniProtKB/TrEMBL
	ATPase_NBD	UniProtKB/TrEMBL
NCBI Gene	Actl6a	ENTREZGENE
PANTHER	ACTIN-LIKE PROTEIN 6A	UniProtKB/TrEMBL
	PTHR11937	UniProtKB/TrEMBL
Pfam	Actin	UniProtKB/TrEMBL
PROSITE	ACTINS_2	UniProtKB/TrEMBL
SMART	ACTIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53067	UniProtKB/TrEMBL
UniProt	I3MFP6_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

RGD Manual Annotations