Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | human immunodeficiency virus infectious disease | | ISO | TAF9 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:15308739 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | human immunodeficiency virus infectious disease | | ISO | TAF9 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:15308739 | |
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# | Reference Title | Reference Citation |
1. | Rat TAFII31 gene is induced upon programmed cell death in differentiated PC12 cells deprived of NGF. | Aoki T, etal., Biochem Biophys Res Commun 1997 May 8;234(1):230-4. |
2. | In vivo functional analysis of the histone 3-like TAF9 and a TAF9-related factor, TAF9L. | Chen Z and Manley JL, J Biol Chem 2003 Sep 12;278(37):35172-83. Epub 2003 Jul 01. |
3. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
4. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
5. | Structural bioinformatics of the general transcription factor TFIID. | Malkowska M, etal., Biochimie. 2013 Apr;95(4):680-91. doi: 10.1016/j.biochi.2012.10.024. Epub 2012 Nov 9. |
6. | NCBI rat LocusLink and RefSeq merged data October 15, 2003 | NCBI rat LocusLink and RefSeq merged data October 15, 2003 |
7. | Dynamics of nucleotide metabolism as a supporter of life phenomena. | Noma T J Med Invest. 2005 Aug;52(3-4):127-36. |
8. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
9. | GOA pipeline | RGD automated data pipeline |
10. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
11. | Comprehensive gene review and curation | RGD comprehensive gene curation |
12. | ATAC-king the complexity of SAGA during evolution. | Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111. |
13. | Transcriptional modification by a CASK-interacting nucleosome assembly protein. | Wang GS, etal., Neuron. 2004 Apr 8;42(1):113-28. |
PMID:8889548 | PMID:9171108 | PMID:9674425 | PMID:11278372 | PMID:11564863 | PMID:12477932 | PMID:14580349 | PMID:14766980 | PMID:15309719 | PMID:15489227 | PMID:15489334 | PMID:15601843 |
PMID:15899866 | PMID:15960975 | PMID:17636026 | PMID:18722179 | PMID:19251649 |
Taf9 (Rattus norvegicus - Norway rat) |
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TAF9 (Homo sapiens - human) |
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Taf9 (Mus musculus - house mouse) |
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Taf9 (Chinchilla lanigera - long-tailed chinchilla) |
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TAF9 (Pan paniscus - bonobo/pygmy chimpanzee) |
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TAF9 (Canis lupus familiaris - dog) |
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Taf9 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TAF9 (Sus scrofa - pig) |
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TAF9 (Chlorocebus sabaeus - green monkey) |
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Taf9 (Heterocephalus glaber - naked mole-rat) |
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Variants in Taf9
28 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH128995 |
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RH142847 |
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RH136869 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 7 | ||||||||||||
Low | 3 | 33 | 46 | 30 | 19 | 30 | 3 | 4 | 74 | 34 | 34 | 11 | 3 |
Below cutoff | 10 | 11 | 11 | 11 | 5 | 7 | 1 | 5 |
RefSeq Transcripts | NM_001037310 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_184048 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC094341 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AY325235 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY359819 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC091109 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CB724309 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CB743840 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473955 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CV127122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ213120 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ215462 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221138 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ229736 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000002 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000076061 ⟹ ENSRNOP00000068116 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000076294 ⟹ ENSRNOP00000068206 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000076372 ⟹ ENSRNOP00000068315 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000076434 ⟹ ENSRNOP00000067916 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000076484 ⟹ ENSRNOP00000068397 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001037310 ⟹ NP_001032387 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_184048 ⟹ NP_908937 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001032387 | (Get FASTA) | NCBI Sequence Viewer |
NP_908937 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH91109 | (Get FASTA) | NCBI Sequence Viewer |
AAP92636 | (Get FASTA) | NCBI Sequence Viewer | |
AAQ56726 | (Get FASTA) | NCBI Sequence Viewer | |
EDM10205 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000068116 | ||
ENSRNOP00000068116.2 | |||
ENSRNOP00000068397.2 | |||
ENSRNOP00000068424 | |||
ENSRNOP00000068424.2 | |||
ENSRNOP00055039101 | |||
ENSRNOP00055039116 | |||
ENSRNOP00060040366 | |||
ENSRNOP00060040384 | |||
ENSRNOP00060040400 | |||
ENSRNOP00065031329 | |||
ENSRNOP00065031339 | |||
ENSRNOP00065031344 | |||
GenBank Protein | Q5BKE0 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_908937 ⟸ NM_184048 |
- UniProtKB: | Q6UV34 (UniProtKB/Swiss-Prot), Q7TP20 (UniProtKB/Swiss-Prot), Q5BKE0 (UniProtKB/Swiss-Prot), A6I598 (UniProtKB/TrEMBL), A0A8L2QZB8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001032387 ⟸ NM_001037310 |
- UniProtKB: | Q6UV34 (UniProtKB/Swiss-Prot), Q7TP20 (UniProtKB/Swiss-Prot), Q5BKE0 (UniProtKB/Swiss-Prot), A6I598 (UniProtKB/TrEMBL), A0A8L2QZB8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000068206 ⟸ ENSRNOT00000076294 |
RefSeq Acc Id: | ENSRNOP00000068315 ⟸ ENSRNOT00000076372 |
RefSeq Acc Id: | ENSRNOP00000068116 ⟸ ENSRNOT00000076061 |
RefSeq Acc Id: | ENSRNOP00000068397 ⟸ ENSRNOT00000076484 |
RefSeq Acc Id: | ENSRNOP00000067916 ⟸ ENSRNOT00000076434 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q5BKE0-F1-model_v2 | AlphaFold | Q5BKE0 | 1-264 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13691112 | ||||||||
Promoter ID: | EPDNEW_R1633 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Taf9_1 | ||||||||
Description: | TATA-box binding protein associated factor 9 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:727861 | AgrOrtholog |
BioCyc Gene | G2FUF-54655 | BioCyc |
Ensembl Genes | ENSRNOG00000039848 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ENSRNOG00000051258 | Ensembl, UniProtKB/TrEMBL | |
ENSRNOG00055027456 | UniProtKB/Swiss-Prot | |
ENSRNOG00060027914 | UniProtKB/Swiss-Prot | |
ENSRNOG00065022622 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSRNOT00000076061 | ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOT00000076061.2 | UniProtKB/Swiss-Prot | |
ENSRNOT00000076484.2 | UniProtKB/TrEMBL | |
ENSRNOT00000076786 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSRNOT00000076786.3 | UniProtKB/Swiss-Prot | |
ENSRNOT00055047524 | UniProtKB/Swiss-Prot | |
ENSRNOT00055047539 | UniProtKB/Swiss-Prot | |
ENSRNOT00060048451 | UniProtKB/Swiss-Prot | |
ENSRNOT00060048469 | UniProtKB/Swiss-Prot | |
ENSRNOT00060048485 | UniProtKB/Swiss-Prot | |
ENSRNOT00065038621 | UniProtKB/Swiss-Prot | |
ENSRNOT00065038632 | UniProtKB/Swiss-Prot | |
ENSRNOT00065038637 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 1.10.20.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.40.50.300 | UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7319327 | IMAGE-MGC_LOAD |
IMAGE:7322630 | IMAGE-MGC_LOAD | |
InterPro | Adenyl_kinase_AK6 | UniProtKB/TrEMBL |
Depp_CoAkinase | UniProtKB/TrEMBL | |
Histone-fold | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/TrEMBL | |
TFIID-31 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
MGC_CLONE | MGC:108535 | IMAGE-MGC_LOAD |
MGC:109428 | IMAGE-MGC_LOAD | |
NCBI Gene | 373541 | ENTREZGENE |
PANTHER | ADENYLATE KINASE ISOENZYME 6 | UniProtKB/TrEMBL |
POS9-ACTIVATING FACTOR FAP7-RELATED | UniProtKB/TrEMBL | |
TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 9 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | AAA_18 | UniProtKB/TrEMBL |
TFIID-31kDa | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Taf9 | PhenoGen |
PROSITE | DPCK | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000039848 | RatGTEx |
ENSRNOG00000051258 | RatGTEx | |
ENSRNOG00055027456 | RatGTEx | |
ENSRNOG00060027914 | RatGTEx | |
ENSRNOG00065022622 | RatGTEx | |
Superfamily-SCOP | SSF47113 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF52540 | UniProtKB/TrEMBL | |
UniProt | A0A096MJG1_RAT | UniProtKB/TrEMBL |
A0A096MK91_RAT | UniProtKB/TrEMBL | |
A0A8L2QZB8 | ENTREZGENE, UniProtKB/TrEMBL | |
A6I597_RAT | UniProtKB/TrEMBL | |
A6I598 | ENTREZGENE, UniProtKB/TrEMBL | |
Q5BKE0 | ENTREZGENE | |
Q6UV34 | ENTREZGENE | |
Q7TP20 | ENTREZGENE | |
TAF9_RAT | UniProtKB/Swiss-Prot | |
UniProt Secondary | Q6UV34 | UniProtKB/Swiss-Prot |
Q7TP20 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-11-29 | Taf9 | TATA-box binding protein associated factor 9 | Taf9 | TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-07-11 | Taf9 | TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor | Taf9_predicted | TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) | Data merged from RGD:1306162 | 737654 | APPROVED |
2005-07-08 | Taf9 | TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor | Symbol and Name status set to approved | 1299863 | APPROVED | ||
2005-01-12 | Taf9_predicted | TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
Note Type | Note | Reference |
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