Taf9 (TATA-box binding protein associated factor 9) - Rat Genome Database

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Gene: Taf9 (TATA-box binding protein associated factor 9) Rattus norvegicus
Analyze
Symbol: Taf9
Name: TATA-box binding protein associated factor 9
RGD ID: 727861
Description: Predicted to enable several functions, including ATPase binding activity; C2H2 zinc finger domain binding activity; and p53 binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity and histone acetyltransferase activity. Involved in positive regulation of transcription by RNA polymerase II and response to L-glutamate. Predicted to be located in nucleoplasm. Predicted to be part of SAGA complex; nucleoplasm; and pre-snoRNP complex. Orthologous to human TAF9 (TATA-box binding protein associated factor 9); PARTICIPATES IN de novo purine biosynthetic pathway; RNA polymerase II transcription initiation pathway; ribosome biogenesis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CINAP; LOC294694; MGC108535; MGC109428; RNA polymerase II TBP-associated factor subunit G; TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor; TAF9 RNA polymerase II, TATA box binding protein-associated factor; TAFII-31; TAFII-32; TAFII31; TAFII32; transcription initiation factor TFIID 31 kDa subunit; transcription initiation factor TFIID 32 kDa subunit; transcription initiation factor TFIID subunit 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Taf9-ps  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8233,528,388 - 33,532,395 (+)NCBIGRCr8
mRatBN7.2231,794,316 - 31,798,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl231,794,142 - 31,798,769 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx238,928,842 - 38,932,844 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0236,969,330 - 36,973,211 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0231,827,274 - 31,831,281 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0230,664,407 - 30,668,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl230,664,639 - 30,668,414 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0249,824,043 - 49,828,050 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4231,454,557 - 31,466,611 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1231,374,959 - 31,386,977 (+)NCBI
Celera227,807,006 - 27,811,013 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
MLL1 complex  (IEA,ISO,ISS)
nucleoplasm  (ISO)
nucleus  (IEA,ISO)
pre-snoRNP complex  (IEA,ISO)
SAGA complex  (IBA,IEA,ISO)
transcription factor TFIID complex  (IBA,IEA,ISO)
transcription factor TFTC complex  (IBA,IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rat TAFII31 gene is induced upon programmed cell death in differentiated PC12 cells deprived of NGF. Aoki T, etal., Biochem Biophys Res Commun 1997 May 8;234(1):230-4.
2. In vivo functional analysis of the histone 3-like TAF9 and a TAF9-related factor, TAF9L. Chen Z and Manley JL, J Biol Chem 2003 Sep 12;278(37):35172-83. Epub 2003 Jul 01.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Structural bioinformatics of the general transcription factor TFIID. Malkowska M, etal., Biochimie. 2013 Apr;95(4):680-91. doi: 10.1016/j.biochi.2012.10.024. Epub 2012 Nov 9.
6. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
7. Dynamics of nucleotide metabolism as a supporter of life phenomena. Noma T J Med Invest. 2005 Aug;52(3-4):127-36.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. ATAC-king the complexity of SAGA during evolution. Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111.
13. Transcriptional modification by a CASK-interacting nucleosome assembly protein. Wang GS, etal., Neuron. 2004 Apr 8;42(1):113-28.
Additional References at PubMed
PMID:8889548   PMID:9171108   PMID:9674425   PMID:11278372   PMID:11564863   PMID:12477932   PMID:14580349   PMID:14766980   PMID:15309719   PMID:15489227   PMID:15489334   PMID:15601843  
PMID:15899866   PMID:15960975   PMID:17636026   PMID:18722179   PMID:19251649  


Genomics

Comparative Map Data
Taf9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8233,528,388 - 33,532,395 (+)NCBIGRCr8
mRatBN7.2231,794,316 - 31,798,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl231,794,142 - 31,798,769 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx238,928,842 - 38,932,844 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0236,969,330 - 36,973,211 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0231,827,274 - 31,831,281 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0230,664,407 - 30,668,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl230,664,639 - 30,668,414 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0249,824,043 - 49,828,050 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4231,454,557 - 31,466,611 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1231,374,959 - 31,386,977 (+)NCBI
Celera227,807,006 - 27,811,013 (+)NCBICelera
Cytogenetic Map2q12NCBI
TAF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38569,364,743 - 69,369,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl569,362,026 - 69,370,013 (-)EnsemblGRCh38hg38GRCh38
GRCh37568,660,570 - 68,665,651 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36568,683,309 - 68,701,596 (-)NCBINCBI36Build 36hg18NCBI36
Build 34568,683,310 - 68,701,122NCBI
Celera565,650,213 - 65,668,504 (-)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef565,603,597 - 65,621,883 (-)NCBIHuRef
CHM1_1568,647,401 - 68,665,684 (-)NCBICHM1_1
T2T-CHM13v2.0570,190,530 - 70,195,609 (-)NCBIT2T-CHM13v2.0
Taf9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913100,787,851 - 100,792,568 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13100,788,087 - 100,792,568 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl13100,787,487 - 100,802,867 (+)EnsemblGRCm39 Ensembl
GRCm3813100,651,343 - 100,656,060 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13100,651,579 - 100,656,060 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl13100,650,979 - 100,666,359 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713101,421,298 - 101,436,368 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613101,751,631 - 101,766,616 (+)NCBIMGSCv36mm8
Celera13104,261,518 - 104,276,056 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1353.23NCBI
Taf9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495557574,506 - 76,272 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495557574,506 - 76,272 (-)NCBIChiLan1.0ChiLan1.0
TAF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2444,550,152 - 44,554,888 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1542,703,749 - 42,708,513 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0544,630,503 - 44,635,760 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1546,201,985 - 46,207,254 (+)NCBIpanpan1.1PanPan1.1panPan2
TAF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,403,908 - 54,406,857 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl254,390,411 - 54,406,872 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03619,339,518 - 19,340,582 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl254,914,940 - 54,917,901 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1447,834,795 - 47,835,859 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.03619,524,389 - 19,525,453 (-)NCBIUU_Cfam_GSD_1.0
Taf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213191,315,967 - 191,320,141 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936480252,435 - 256,609 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936480252,435 - 256,609 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1647,490,027 - 47,495,880 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11647,494,841 - 47,499,568 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21651,338,769 - 51,343,462 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAF9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1465,451,038 - 65,455,896 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604914,187,417 - 14,192,526 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624905240,760 - 244,656 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624905240,760 - 244,656 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Taf9
30 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:34
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000061166
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)228484589169504100Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)228484589169504100Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat

Markers in Region
RH128995  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2231,797,926 - 31,798,125 (+)MAPPERmRatBN7.2
Rnor_6.0230,668,017 - 30,668,215NCBIRnor6.0
Rnor_5.0249,827,653 - 49,827,851UniSTSRnor5.0
RGSC_v3.4231,458,167 - 31,458,365UniSTSRGSC3.4
Celera227,810,616 - 27,810,814UniSTS
RH 3.4 Map263.88UniSTS
Cytogenetic Map2q12UniSTS
RH142847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2231,794,893 - 31,795,007 (+)MAPPERmRatBN7.2
Rnor_6.0230,664,985 - 30,665,098NCBIRnor6.0
Rnor_5.0249,824,621 - 49,824,734UniSTSRnor5.0
RGSC_v3.4231,455,135 - 31,455,248UniSTSRGSC3.4
Celera227,807,584 - 27,807,697UniSTS
RH 3.4 Map278.3UniSTS
Cytogenetic Map2q12UniSTS
RH136869  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2231,806,049 - 31,806,200 (+)MAPPERmRatBN7.2
mRatBN7.22025,577,081 - 25,577,232 (+)MAPPERmRatBN7.2
Rnor_6.02027,129,890 - 27,130,040NCBIRnor6.0
Rnor_6.0230,676,139 - 30,676,289NCBIRnor6.0
Rnor_5.02028,970,428 - 28,970,578UniSTSRnor5.0
Rnor_5.0249,835,775 - 49,835,925UniSTSRnor5.0
RGSC_v3.4231,466,289 - 31,466,439UniSTSRGSC3.4
RGSC_v3.42025,401,745 - 25,401,895UniSTSRGSC3.4
Celera2026,872,950 - 26,873,100UniSTS
Celera227,818,538 - 27,818,688UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map20p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000076061   ⟹   ENSRNOP00000068116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl230,666,475 - 30,668,185 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076294   ⟹   ENSRNOP00000068206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl230,664,642 - 30,667,868 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076372   ⟹   ENSRNOP00000068315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl230,664,639 - 30,667,456 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076434   ⟹   ENSRNOP00000067916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl230,664,690 - 30,667,873 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076484   ⟹   ENSRNOP00000068397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl230,664,695 - 30,668,414 (+)Ensembl
RefSeq Acc Id: NM_001037310   ⟹   NP_001032387
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,528,643 - 33,532,395 (+)NCBI
mRatBN7.2231,794,571 - 31,798,324 (+)NCBI
Rnor_6.0230,664,662 - 30,668,414 (+)NCBI
Rnor_5.0249,824,043 - 49,828,050 (+)NCBI
RGSC_v3.4231,454,557 - 31,466,611 (+)RGD
Celera227,807,261 - 27,811,013 (+)NCBI
Sequence:
RefSeq Acc Id: NM_184048   ⟹   NP_908937
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,528,388 - 33,532,395 (+)NCBI
mRatBN7.2231,794,316 - 31,798,324 (+)NCBI
Rnor_6.0230,664,407 - 30,668,414 (+)NCBI
Rnor_5.0249,824,043 - 49,828,050 (+)NCBI
RGSC_v3.4231,454,557 - 31,466,611 (+)RGD
Celera227,807,006 - 27,811,013 (+)NCBI
Sequence:
RefSeq Acc Id: NP_908937   ⟸   NM_184048
- UniProtKB: Q6UV34 (UniProtKB/Swiss-Prot),   Q7TP20 (UniProtKB/Swiss-Prot),   Q5BKE0 (UniProtKB/Swiss-Prot),   A6I598 (UniProtKB/TrEMBL),   A0A8L2QZB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001032387   ⟸   NM_001037310
- UniProtKB: Q6UV34 (UniProtKB/Swiss-Prot),   Q7TP20 (UniProtKB/Swiss-Prot),   Q5BKE0 (UniProtKB/Swiss-Prot),   A6I598 (UniProtKB/TrEMBL),   A0A8L2QZB8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068206   ⟸   ENSRNOT00000076294
Ensembl Acc Id: ENSRNOP00000068315   ⟸   ENSRNOT00000076372
Ensembl Acc Id: ENSRNOP00000068116   ⟸   ENSRNOT00000076061
Ensembl Acc Id: ENSRNOP00000068397   ⟸   ENSRNOT00000076484
Ensembl Acc Id: ENSRNOP00000067916   ⟸   ENSRNOT00000076434

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BKE0-F1-model_v2 AlphaFold Q5BKE0 1-264 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691112
Promoter ID:EPDNEW_R1633
Type:multiple initiation site
Name:Taf9_1
Description:TATA-box binding protein associated factor 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0230,664,685 - 30,664,745EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727861 AgrOrtholog
BioCyc Gene G2FUF-54655 BioCyc
Ensembl Genes ENSRNOG00000039848 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000051258 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055027456 UniProtKB/Swiss-Prot
  ENSRNOG00060027914 UniProtKB/Swiss-Prot
  ENSRNOG00065022622 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000076061 UniProtKB/TrEMBL
  ENSRNOT00000076061.2 UniProtKB/Swiss-Prot
  ENSRNOT00000076484.2 UniProtKB/TrEMBL
  ENSRNOT00000076786 UniProtKB/TrEMBL
  ENSRNOT00000076786.3 UniProtKB/Swiss-Prot
  ENSRNOT00055047524 UniProtKB/Swiss-Prot
  ENSRNOT00055047539 UniProtKB/Swiss-Prot
  ENSRNOT00060048451 UniProtKB/Swiss-Prot
  ENSRNOT00060048469 UniProtKB/Swiss-Prot
  ENSRNOT00060048485 UniProtKB/Swiss-Prot
  ENSRNOT00065038621 UniProtKB/Swiss-Prot
  ENSRNOT00065038632 UniProtKB/Swiss-Prot
  ENSRNOT00065038637 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7319327 IMAGE-MGC_LOAD
  IMAGE:7322630 IMAGE-MGC_LOAD
InterPro Adenyl_kinase_AK6 UniProtKB/TrEMBL
  Depp_CoAkinase UniProtKB/TrEMBL
  Histone-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  TFIID-31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TFIID_subunit_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:373541 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108535 IMAGE-MGC_LOAD
  MGC:109428 IMAGE-MGC_LOAD
NCBI Gene 373541 ENTREZGENE
PANTHER ADENYLATE KINASE ISOENZYME 6 UniProtKB/TrEMBL
  POS9-ACTIVATING FACTOR FAP7-RELATED UniProtKB/TrEMBL
  TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AAA_18 UniProtKB/TrEMBL
  TFIID-31kDa UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Taf9 PhenoGen
PROSITE DPCK UniProtKB/TrEMBL
RatGTEx ENSRNOG00000039848 RatGTEx
  ENSRNOG00000051258 RatGTEx
  ENSRNOG00055027456 RatGTEx
  ENSRNOG00060027914 RatGTEx
  ENSRNOG00065022622 RatGTEx
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A096MJG1_RAT UniProtKB/TrEMBL
  A0A096MK91_RAT UniProtKB/TrEMBL
  A0A8L2QZB8 ENTREZGENE, UniProtKB/TrEMBL
  A6I597_RAT UniProtKB/TrEMBL
  A6I598 ENTREZGENE, UniProtKB/TrEMBL
  Q5BKE0 ENTREZGENE
  Q6UV34 ENTREZGENE
  Q7TP20 ENTREZGENE
  TAF9_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q6UV34 UniProtKB/Swiss-Prot
  Q7TP20 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-29 Taf9  TATA-box binding protein associated factor 9  Taf9  TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-11 Taf9  TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor  Taf9_predicted  TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted)  Data merged from RGD:1306162 737654 APPROVED
2005-07-08 Taf9  TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor      Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Taf9_predicted  TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted)      Symbol and Name status set to approved 70820 APPROVED

RGD Curation Notes
Note Type Note Reference