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Gene: Sema5a (semaphorin 5A) Rattus norvegicus
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Symbol: Sema5a
Name: semaphorin 5A
Description: Exhibits chondroitin sulfate proteoglycan binding activity; heparan sulfate proteoglycan binding activity; and syndecan binding activity. Involved in nervous system development and signal clustering. Localizes to the membrane. Orthologous to human SEMA5A (semaphorin 5A); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC310207; sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A; sema F; semaphorin-5A; semaphorin-F
Orthologs:
Homo sapiens (human) : SEMA5A (semaphorin 5A)  HGNC  Alliance
Mus musculus (house mouse) : Sema5a (sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sema5a (semaphorin 5A)
Pan paniscus (bonobo/pygmy chimpanzee) : SEMA5A (semaphorin 5A)
Canis lupus familiaris (dog) : SEMA5A (semaphorin 5A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sema5a (semaphorin 5A)
Sus scrofa (pig) : SEMA5A (semaphorin 5A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0285,377,318 - 85,808,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02105,049,343 - 105,480,370 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4284,725,092 - 85,158,599 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1284,835,136 - 85,097,066 (+)NCBI
Celera278,800,990 - 79,231,054 (+)NCBICelera
Cytogenetic Map2q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sema5a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1308650
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.