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Gene: Fam169a (family with sequence similarity 169, member A) Rattus norvegicus

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Symbol:

Fam169a

Name:

family with sequence similarity 169, member A

RGD ID:

1590893

Description:

Orthologous to human FAM169A (family with sequence similarity 169 member A); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical LOC310013; LOC310013; soluble lamin-associated protein of 75 kDa

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	30,115,307 - 30,175,972 (+)	NCBI		GRCr8
mRatBN7.2	2	28,384,162 - 28,441,361 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	28,383,784 - 28,438,910 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	27,884,748 - 27,941,069 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	27,905,535 - 27,938,525 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	46,995,839 - 47,051,958 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	27,568,634 - 27,604,695 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	24,426,891 - 24,483,273 (+)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Neurodevelopmental Disorders (ISO)

Sandhoff disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

alpha-Zearalanol (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

caffeine (ISO)

clothianidin (ISO)

cobalt dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

coumarin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

folic acid (ISO)

FR900359 (ISO)

lead(0) (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

mercury dichloride (ISO)

nickel atom (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP)

paraquat (EXP)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

ursodeoxycholic acid (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Fam169a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	30,115,307 - 30,175,972 (+)	NCBI		GRCr8
mRatBN7.2	2	28,384,162 - 28,441,361 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	28,383,784 - 28,438,910 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	27,884,748 - 27,941,069 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	27,905,535 - 27,938,525 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	46,995,839 - 47,051,958 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	27,568,634 - 27,604,695 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	24,426,891 - 24,483,273 (+)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

FAM169A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	74,777,574 - 74,866,966 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	74,777,574 - 74,866,966 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	74,073,399 - 74,162,791 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	74,109,155 - 74,198,371 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	69,968,151 - 70,057,308 (-)	NCBI		Celera
Cytogenetic Map	5	q13.3	NCBI
HuRef	5	69,278,377 - 69,367,630 (-)	NCBI		HuRef
CHM1_1	5	73,506,252 - 73,595,484 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	75,258,467 - 75,347,878 (-)	NCBI		T2T-CHM13v2.0

Fam169a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	97,203,795 - 97,266,801 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	97,203,794 - 97,267,521 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	97,067,287 - 97,130,293 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	97,067,286 - 97,131,013 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	97,837,242 - 97,899,477 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	98,171,702 - 98,231,928 (+)	NCBI		MGSCv36	mm8
Celera	13	100,700,957 - 100,762,928 (+)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	50.66	NCBI

Fam169a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	25,840,274 - 25,892,842 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	25,814,269 - 25,896,371 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAM169A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	40,441,521 - 40,534,336 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	38,595,151 - 38,687,971 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	40,440,291 - 40,533,018 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	41,053,755 - 41,143,541 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	41,053,754 - 41,143,534 (+)	Ensembl	panpan1.1		panPan2

FAM169A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	57,319,095 - 57,370,443 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	57,322,602 - 57,361,581 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	54,305,544 - 54,367,748 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	57,852,357 - 57,915,484 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	57,852,383 - 57,915,431 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	54,916,535 - 54,979,025 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	55,679,431 - 55,741,658 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	56,576,747 - 56,638,999 (-)	NCBI		UU_Cfam_GSD_1.0

Fam169a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	188,996,907 - 189,063,227 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936549	1,816,090 - 1,861,972 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936549	1,795,741 - 1,862,826 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM169A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	83,852,220 - 83,926,871 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	83,852,217 - 83,927,656 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	85,437,698 - 85,513,423 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM169A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	69,126,069 - 69,215,151 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	69,129,895 - 69,215,176 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	17,903,778 - 17,992,741 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam169a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624924	68,891 - 131,063 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624924	54,100 - 134,749 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Fam169a
341 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	95
Count of miRNA genes:	81
Interacting mature miRNAs:	86
Transcripts:	ENSRNOT00000022120
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	11591100	56591100	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	22384627	67384627	Rat
631682	Bp115	Blood pressure QTL 115	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	1	37410502	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	41244106	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	20304672	65304672	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
738012	Anxrr3	Anxiety related response QTL 3	3.8		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	2	9023519	54023519	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
10402051	Gdil2	Gastrointestinal dilation QTL 2			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	24903853	74786777	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	27157160	72157160	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	26999571	43154682	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	7887772	42804738	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1643006	Pain1	Pain QTL 1	3.63	0.005	mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	2	26999571	48268661	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	5873687	102844969	Rat
2300168	Bmd47	Bone mineral density QTL 47	6.6	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	2	20662448	65662448	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	81754745	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	11852062	49003364	Rat
1357990	Ael1	Aortic elastin QTL 1	3.1	0.00091	aorta elastin amount (VT:0003905)	aortic elastin	2	19076825	64076825	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26917817	136917119	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	16491740	61491740	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	127469484	Rat

Markers in Region

Ndufa7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	11	31,140,248 - 31,140,451	NCBI	Rnor5.0
Rnor_5.0	3	65,990,630 - 65,990,837	NCBI	Rnor5.0
Rnor_5.0	11	30,996,807 - 30,997,010	NCBI	Rnor5.0
RGSC_v3.4	3	55,312,233 - 55,312,439	UniSTS	RGSC3.4
RGSC_v3.4	11	27,474,319 - 27,474,521	UniSTS	RGSC3.4
Celera	2	24,433,584 - 24,433,789	UniSTS
Celera	3	57,222,765 - 57,222,971	UniSTS
Celera	11	26,690,195 - 26,690,397	UniSTS
Cytogenetic Map	3	q22	UniSTS
Cytogenetic Map	7	q12	UniSTS
Cytogenetic Map	2	q12	UniSTS

BE118011

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	28,404,406 - 28,404,572 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	27,904,115 - 27,904,280	NCBI	Rnor6.0
Rnor_5.0	2	47,015,004 - 47,015,169	UniSTS	Rnor5.0
RGSC_v3.4	2	27,567,212 - 27,567,377	UniSTS	RGSC3.4
Celera	2	24,446,335 - 24,446,500	UniSTS
RH 3.4 Map	2	30.0	UniSTS
Cytogenetic Map	2	q12	UniSTS

UniSTS:237085

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	28,438,713 - 28,438,914 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	27,938,422 - 27,938,622	NCBI	Rnor6.0
Rnor_5.0	2	47,049,311 - 47,049,511	UniSTS	Rnor5.0
RGSC_v3.4	2	27,603,378 - 27,603,578	UniSTS	RGSC3.4
Celera	2	24,480,626 - 24,480,826	UniSTS
Cytogenetic Map	2	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	89	87	57	25	57	6	215	96	93	45	60	30

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022120 ⟹ ENSRNOP00000022120

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	28,383,856 - 28,438,910 (+)	Ensembl
Rnor_6.0 Ensembl	2	27,905,535 - 27,938,525 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109459 ⟹ ENSRNOP00000078762

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	28,383,784 - 28,438,910 (+)	Ensembl

RefSeq Acc Id:

NM_001427646 ⟹ NP_001414575

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	30,119,236 - 30,175,972 (+)	NCBI

RefSeq Acc Id:

XM_006231831 ⟹ XP_006231893

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	30,119,748 - 30,175,972 (+)	NCBI
mRatBN7.2	2	28,384,794 - 28,441,361 (+)	NCBI
Rnor_6.0	2	27,884,748 - 27,941,069 (+)	NCBI
Rnor_5.0	2	46,995,839 - 47,051,958 (+)	NCBI

Sequence:

show sequence

ACGATTGTTGTGCATGGGAAAGAATGACGAAATACATGGATCCCTTCTGGGAGTTTACGCGGGT
ATCTTGTCCAAAGTAGACTCTGACATAACCACCTGATGCAGAGAATGGCATTCCCTGTGGATTT
GCTGGATAACTGCACACATGAGGAATTGGAAAATTCTGCTGAGGATTACCTCTCCAACTTACGG
TGTGGGGACCCTGAGAATCCAGAATGTTTCTCTATTCTCAACTTTACGATTCCTGTGAGCCTGT
CAAATGTGGGCTTCGTACCTCTCTATGGCGGCAATCAGACCCAGAAGATCCTTGCTCTCTTTGC
GCCTGAGGATTCACTTACAGCTGTGGCACTTTACCTTGTTGGTCAGTGGTGGGCCATTGATGAT
CTTGTGAAAACATCGGAACCTTCTAGAGAGGGGCTGAAGCAGGTGAGCACTCTTGGAGAAAGAG
TGGTTCTGTATGTTCTCAATCGAATTATTTATAGAAAACAGGAAATGGAGAGAAATGAGATCCC
ATTCCTGTGTCATAGCAGTACTGACTATGCTAAGATTCTGTGGAAGAAAGGAGAGGCCATTGGG
TTTTACTCAGTTAAGCCTACAGGAAGCTTATGTGCCTCATTTCTTACCCAGAATTACCAACTGC
CAGTTCTTGACACAATGTTTATAAGGAAGAAATACCGAGGAAAAGATCTGGGGCTTCATATGCT
GGAGGATTTTGTTGATTCGTTCACAGAAGATGCACTTGGCTTACGGTATCCACTGTCTTCTCTC
ATGTACACAGCTTCCAAGCAATACTTTGAAAAGTATCCAGGAGATCATGAACTTCTTTGGGAAG
TTGAAGGTGTGGGTCACTGGCACCAGCGAATACCAATCACTAGAGCATTACAGAGAGAAGCTGT
TAACGTTACAGAGATTTCTCAATATGAAGCCAAAAGACCTGTGTCTGGAGAATATGGTCCTGCT
GCTGTACCGGAGTGTGAACCTGGCTTGGGCGAGCGTCAGTGCAGAGAGCTGCAGATCCATTCCC
TAAAAGATGCCTTTGCTAGCACTTCTGAAGGTCCAGAAAAGACACCTGTTTCCACTCGTACTCG
GAGCAGTCATCTAAAGCGACCAAAGATTGGAAAGCGTTTTCAGGAGTCTGAATTTAGTAGTTCT
CAAGGTGAAGATGAAAACTCTGCCCAGACTTCACCTATGGCTTCCGTAAACAAAATAGAGTATG
CTGCAAGGACGTCAGAGAGCTCGGAGGAAGTCCCTGAGGAGGAGCCTGAGAAGAGAGTGGTTGA
GTGTGAGGACGGGAGCAGTGATAAGGACGCACGGCCTGCTCTGGAGACTCAGCCACGCCTACAG
AAACAGGATGGGGACAGGGACTCTGCGTTAGAGCCTGTGAATGGTGAGGTAACAGATGCTGCCC
TCAAGACTTCCCTTGCAGCTGAAGAAAATGACTCCAGCAGTGAGGGTCCTGAAGAAGAAATTCC
ACCTTTAACTTCCAGTGGAGAGACTGGGCCTCCTGTTCCACGGGCAGCAGAGTCTTCAAAAGCA
CCCGAGGCTACACTAGACCAGACCTCACCTGTTACTGACGCAGAAATGTTGACTGATGAAGGCC
CCTCTAATGATAAAGGTCATACTGAAGAAAATCTGTCCCCAGTTTCAAAAAAGAAAACTATTTT
GGGGAGCTCAGACAATGTTGCCACTCTATCAAATGAAGAAAAGTCAGATGGTGACTTTCCAAAT
TCTGTGGTAGCAGAATTTCCTGAAGAACCAGTCTCTGAGAATGTATCACCCAACACTACTTCCT
CAGTGGAAGACCAGGGTGAGGAGGGGGTACCTGAAGCCCAGGAACCATCGGCTACTCAGAGTTC
TCTGATAGAGGTAGAACTTGAAGACGTGCCATTTCCACAGAATGCAGGACAGAAGAGCCAGTCA
GAGGAGCAGTCTGAAGCATCTTCTGAGCAACTGGAACAGTATGCACAGTCAGCAGAGAAAGCCG
TGGATAGCAGCTCAGAGGAGATTGAAGTGGAAGTTCCTGTAGTAGACAGGCGCAGTCTGAGAAG
AAAGGCCAAAGGACATAAGGGACCTGGCAAGAAGAAAGCCAAGATGACCTGAATGGAGGAGAGA
CGTGGTTGATAAATACGTTTGTTGTTGTTGATGTTGTTTTTAAACTATGGTTAATTAATAAACA
GCATGGGGCACAGGACAAATTTTAAAATTTCAATTTGAACCTACAGATACAGGTTTTCTTTTTC
TTTTAGAACGAGGATTCGCCATTCATTTTCATTTTTCAGGCTATTTTCTGTAACTTTTATTTAT
GAGCCATGTGTCAATTTTGGAAATCCAGGTTATAATTTTCCTTCGGCAAGTAAAACATCTAATC
ATTAAGATTTTAAAAAGACAACTTAAAAAAACTGTTAGACTTTGATCATAGGAATCTTTTATAC
TACTGGTTTTAATGGTAAAACTTGGTAAGGATTCTTAAAGTTTTATCTTAGTATCAGAATCAAT
CTCTGTCCTTAAGTGTAGGCATACCTAAACAAAATGTCAGTTAACTAATATATCAGGAGAACAA
AATGAGAAACTTGTGATCAGTGGTTTATGAAGATGATTGTTTTTGTTTTTACTTCTTAATGTTA
GTTGTAGGTGGAGTTCTTCAAGCCTCTGAGTAGCCTAGACTTCATATCATCTGGTGTTAATAGT
ACTATTAAAGATGTAACTGGTATGTGGGTACATAATTTCAAATTCCACCTGAAGTATTAGTTTG
CTATAATTTTTTCTATATATATTTGTAGATGCTGAAAAGCTTAAGTATGCTTTTATCTTTTAAA
GACCTCAAGTCATTGAATTTAGCATTCAGTTTAACTTGGACTGTGGTCCTGATCACAGGTAGTA
CAGAAGTATAGGCCCCTTCCTAAGCCTCCTTAATTCTACTGCTGTCTAACTCACTGTGACTCTC
ATATCAAAAGACCTCCATCCAGCTTGCCAGTACACCCTTGTGTCCATTTTTGGATAGGTCTAGA
ACTCTGTCCGACTACCTGTAGAGCTAGGTGGAAGGAGTAAAGCTGCCCTAGGAGATGTACAAAT
GCCTACACTCTGATTCTGCTGTCCCTTTGGGTCTTGTGTACTTTAGATGTCTTCAGAGTACTGG
CTGTAGGCCAATCTGTATGTGCACTTTATTGCTATGGCAAGAGCATTTGATTTTTTTGTTCTAA
GATGGTTTCTCTGTATAGCCTTGACTGTCCTGCTCTTGCTCTGTAAACCAGGCTGACCTCCAGC
TCAGATCTGACTGCCTCTGCCTATTGAGTGTTGGGATTAAAGGTGTGCAGCACCACCACCTGAC
TGTTTGATATTTTAGAAATACTTTTAAATTAACTATTTAATGACAATTGTTATTAAAATGAACA
AACTGGTTATTCTTAGGGTTCATAGAGAATTGGTCACTTGGGAAATACCATGTCCTTTGATTTG
TATTTTAGTTAGAGACTACTTTGATACCAGTCAGATTTGTTTTTGAAACAGCTTGAACTTTTGA
GATGAATGTTGGGAATTTGAATCATGAAGTGCTGTGAGTCTATGTTCAGTCCATTCAGTCTTCA
GTCAGCTGATTTGATGTTTTTATGTTTCATTTATTAGGGATGCTGGTATTTTAGAAAAGTCTAA
TTAGTCAAGATCTTTAAGCAGCAGACCAAATAGTAAACCCTTTTATGAAGTCAGATCACTTGCA
CTTACCTGTTGTCTTGATTTTGATTAGCTGTTAGGTAATTTCATTCTAAGTGAAAATTATACTG
ACCATTTTTCTTAGTAAATGCTAAGTTATAAAGTAGATCTGACTAACTAGTGAATTTGCAAGCG
TGGATGCTGTTTTACACATTTAGAGAAACTTGTCAATTTACAGATAGTAACCGAAGGGTTTGTT
AAGATTTAGAAACTTCCAAATTCTGTTTTTCATTTTTAACATTTAAAAATTTCTTGGTACATTG
TTGTTTTGTTTTTTGTGGGCTATTGTTCCCCTTACATTACATTCTTTAAATGAGTGTTTTTAAG
AGATTGCACTCACTGGCAGCTCAATGTATGAATAGTCTCTAGAGTTAAAATATTTACATATCAC
ACTGGGTACTAGCAGTATAAACTTACTTATACTTCCTAAATGTGTTTGCTATAAATGGGATTCA
AAGCAGTTTCAAAACATTTTGTTCGGTATACAAGAAAACTTGTTACTTGTCTGTGGCGTTAAAG
TTTATATAGAGGAAAGTTAGGTCACAGGAAAAATCTTTCATATTCAGTAACGTTTATATAAAAT
TTGTAACAAAATTTATGTTCAGTAGGGAATGTAAACAAATGTGGCTTTTGCAAGGCATGAGGAC
TACAGTGACGTCAAGCAGCGCTCTGCTGAGTGCTCAGTCATATTCTAGTCTCCTGTGAACTGGT
ACTGTTTCAGTCATGATTGTGGAGAGGGAAGCACCCTTCTAGTGTATATACATATATATTTCCT
TACATAACAAAGCAGATGAGTATTACCAGAAGTTTAGTTCTACTTTCACTTAGACCACACAAAA
GTTTATTTAAGAATTTTATTGTAAAGCTCCTTTAAAACTTTTAAAGAGATTCTATTATGATTTT
TTTAAATAAAACCAAATGGCATGACTTAGACTGTCA

hide sequence

RefSeq Acc Id:

XM_039103472 ⟹ XP_038959400

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	30,119,211 - 30,175,972 (+)	NCBI
mRatBN7.2	2	28,384,497 - 28,441,361 (+)	NCBI

RefSeq Acc Id:

XM_039103474 ⟹ XP_038959402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	30,142,505 - 30,175,972 (+)	NCBI
mRatBN7.2	2	28,407,911 - 28,441,361 (+)	NCBI

RefSeq Acc Id:

XM_063281717 ⟹ XP_063137787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	30,115,307 - 30,175,972 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414575	(Get FASTA)	NCBI Sequence Viewer
	XP_006231893	(Get FASTA)	NCBI Sequence Viewer
	XP_038959400	(Get FASTA)	NCBI Sequence Viewer
	XP_038959402	(Get FASTA)	NCBI Sequence Viewer
	XP_063137787	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM10127	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022120.7
	ENSRNOP00000078762.1

RefSeq Acc Id:	XP_006231893 ⟸ XM_006231831
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G2A6 (UniProtKB/TrEMBL), D3ZKX8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQRMAFPVDLLDNCTHEELENSAEDYLSNLRCGDPENPECFSILNFTIPVSLSNVGFVPLYGGN QTQKILALFAPEDSLTAVALYLVGQWWAIDDLVKTSEPSREGLKQVSTLGERVVLYVLNRIIYR KQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSLCASFLTQNYQLPVLDTMFIRKKY RGKDLGLHMLEDFVDSFTEDALGLRYPLSSLMYTASKQYFEKYPGDHELLWEVEGVGHWHQRIP ITRALQREAVNVTEISQYEAKRPVSGEYGPAAVPECEPGLGERQCRELQIHSLKDAFASTSEGP EKTPVSTRTRSSHLKRPKIGKRFQESEFSSSQGEDENSAQTSPMASVNKIEYAARTSESSEEVP EEEPEKRVVECEDGSSDKDARPALETQPRLQKQDGDRDSALEPVNGEVTDAALKTSLAAEENDS SSEGPEEEIPPLTSSGETGPPVPRAAESSKAPEATLDQTSPVTDAEMLTDEGPSNDKGHTEENL SPVSKKKTILGSSDNVATLSNEEKSDGDFPNSVVAEFPEEPVSENVSPNTTSSVEDQGEEGVPE AQEPSATQSSLIEVELEDVPFPQNAGQKSQSEEQSEASSEQLEQYAQSAEKAVDSSSEEIEVEV PVVDRRSLRRKAKGHKGPGKKKAKMT hide sequence

Ensembl Acc Id:

ENSRNOP00000022120 ⟸ ENSRNOT00000022120

RefSeq Acc Id:	XP_038959400 ⟸ XM_039103472
- Peptide Label:	isoform X2
- UniProtKB:	D3ZKX8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038959402 ⟸ XM_039103474
- Peptide Label:	isoform X3
- UniProtKB:	A6I519 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000078762 ⟸ ENSRNOT00000109459

RefSeq Acc Id:	XP_063137787 ⟸ XM_063281717
- Peptide Label:	isoform X2
- UniProtKB:	D3ZKX8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414575 ⟸ NM_001427646
- UniProtKB:	D3ZKX8 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZKX8-F1-model_v2	AlphaFold	D3ZKX8	1-663	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1590893	AgrOrtholog
BioCyc Gene	G2FUF-54765	BioCyc
Ensembl Genes	ENSRNOG00000016505	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022120.7	UniProtKB/TrEMBL
	ENSRNOT00000109459.1	UniProtKB/TrEMBL
InterPro	FAM169	UniProtKB/TrEMBL
KEGG Report	rno:310013	UniProtKB/TrEMBL
NCBI Gene	310013	ENTREZGENE
PANTHER	PTHR22442	UniProtKB/TrEMBL
	PTHR22442:SF3	UniProtKB/TrEMBL
PhenoGen	Fam169a	PhenoGen
RatGTEx	ENSRNOG00000016505	RatGTEx
UniProt	A0A8I6G2A6	ENTREZGENE, UniProtKB/TrEMBL
	A6I519	ENTREZGENE, UniProtKB/TrEMBL
	D3ZKX8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-30	Fam169a	family with sequence similarity 169, member A	LOC310013	hypothetical LOC310013	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC310013	hypothetical LOC310013			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar