 |
| Create Name: | |
| Description: |
|
| Save what matters to you |
| {{ loginError }} |
| Sign in with your RGD account |
| Create New Account | Recover Password |
Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
 |
Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
|
MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - CTD | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| autistic disorder | ISO | RGD:736453 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19404257 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsDisease Annotations
|
|
Gene-Chemical Interaction Annotations
|
|
|
Gene Ontology Annotations
|
|
|
|
|
|
|
|
References - curated| 1. | Arac D, etal., Neuron. 2007 Dec 20;56(6):992-1003. |
| 2. | Barrow SL, etal., Neural Dev. 2009 May 18;4:17. doi: 10.1186/1749-8104-4-17. |
| 3. | Chih B, etal., Science. 2005 Feb 25;307(5713):1324-8. Epub 2005 Jan 27. |
| 4. | Chubykin AA, etal., J Biol Chem. 2005 Jun 10;280(23):22365-74. Epub 2005 Mar 29. |
| 5. | Chubykin AA, etal., Neuron. 2007 Jun 21;54(6):919-31. |
| 6. | Clarris HJ, etal., Int J Dev Biol 2002;46(4):649-52. |
| 7. | Comoletti D, etal., J Biol Chem. 2003 Dec 12;278(50):50497-505. Epub 2003 Sep 30. |
| 8. | Dresbach T, etal., Mol Cell Neurosci. 2004 Nov;27(3):227-35. |
| 9. | Fang M, etal., Mol Neurobiol. 2016 Jan;53(1):270-84. doi: 10.1007/s12035-014-8999-8. Epub 2014 Nov 27. |
| 10. | Fu Z, etal., J Neurophysiol. 2003 Dec;90(6):3950-7. Epub 2003 Aug 20. |
| 11. | Futai K, etal., Nat Neurosci. 2007 Feb;10(2):186-95. Epub 2007 Jan 21. |
| 12. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 13. | Gjørlund MD, etal., FASEB J. 2012 Oct;26(10):4174-86. doi: 10.1096/fj.11-202242. Epub 2012 Jun 29. |
| 14. | Ichtchenko K, etal., Cell 1995 May 5;81(3):435-43. |
| 15. | Ichtchenko K, etal., J Biol Chem 1996 Feb 2;271(5):2676-82. |
| 16. | Irie M, etal., Science. 1997 Sep 5;277(5331):1511-5. |
| 17. | Jackson J, etal., PLoS One. 2012;7(4):e35557. doi: 10.1371/journal.pone.0035557. Epub 2012 Apr 23. |
| 18. | Ko J, etal., EMBO J. 2009 Oct 21;28(20):3244-55. doi: 10.1038/emboj.2009.249. Epub 2009 Sep 3. |
| 19. | Leone P, etal., EMBO J. 2010 Jul 21;29(14):2461-71. doi: 10.1038/emboj.2010.123. Epub 2010 Jun 11. |
| 20. | MGD data from the GO Consortium |
| 21. | Mondin M, etal., J Neurosci. 2011 Sep 21;31(38):13500-15. doi: 10.1523/JNEUROSCI.6439-10.2011. |
| 22. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 23. | Nguyen T and Sudhof TC, J Biol Chem. 1997 Oct 10;272(41):26032-9. |
| 24. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 25. | RGD automated import pipeline for gene-chemical interactions |
| 26. | Scheiffele P, etal., Cell. 2000 Jun 9;101(6):657-69. |
| 27. | Shipman SL and Nicoll RA, Neuron. 2012 Oct 18;76(2):309-16. doi: 10.1016/j.neuron.2012.07.024. Epub 2012 Oct 17. |
| 28. | Song JY, etal., Proc Natl Acad Sci U S A. 1999 Feb 2;96(3):1100-5. |
| 29. | Stan A, etal., Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):11116-21. doi: 10.1073/pnas.0914233107. Epub 2010 Jun 1. |
| 30. | Suckow AT, etal., J Biol Chem. 2012 Jun 8;287(24):19816-26. doi: 10.1074/jbc.M111.280537. Epub 2012 Apr 23. |
| 31. | Wittenmayer N, etal., Proc Natl Acad Sci U S A. 2009 Aug 11;106(32):13564-9. doi: 10.1073/pnas.0905819106. Epub 2009 Jul 23. |
References - uncurated| PubMed | 9694864 11329178 12202822 12796785 14769026 15458844 15620359 16298368 16982420 17474715 18334216 18579781 18755801 19098102 19105974 20176955 20573900 20739565 20869594 21056983 21356198 21532576 21788371 21911064 22671294 22840401 22960622 23143522 23269831 23426688 23716671 23791195 24613359 24860089 25157101 26325471 26440732 26771491 27423632 28194405 28875935 29592780 30049666 30790215 |
Comparative Map Data| Nlgn1 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NLGN1 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nlgn1 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nlgn1 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NLGN1 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NLGN1 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nlgn1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NLGN1 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NLGN1 (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nlgn1 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| D2Rat335 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| BF394648 |
|
QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
||||||||
RNA-SEQ Expression| testis | heart | brain | ovary | uterus | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
| High | |||||||||||||||
| Medium | 13 | 26 | 25 | ||||||||||||
| Low | 12 | 10 | 14 | 4 | 2 | 4 | 8 | ||||||||
| Below cutoff | 6 | 16 | 1 | 3 | 4 | 7 | 1 | 5 | 23 | 8 |
Nucleotide Sequences| RefSeq Transcripts | NM_053868 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_008760890 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017590583 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017590584 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017590585 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017590586 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017590587 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017590588 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017590589 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017590590 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07009760 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07009761 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009762 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009763 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009764 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009765 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009766 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009767 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009768 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009769 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009770 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009771 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07009772 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015811 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015812 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015813 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015814 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015815 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015816 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015817 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015818 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015819 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015820 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015821 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015822 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015823 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015824 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015825 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015826 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015827 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015828 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015829 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015830 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015831 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015832 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015833 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015834 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015835 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01015836 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473961 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| U22952 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | ENSRNOT00000041111 ⟹ ENSRNOP00000040172 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
| RefSeq Acc Id: | ENSRNOT00000092660 ⟹ ENSRNOP00000075793 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
| RefSeq Acc Id: | NM_053868 ⟹ NP_446320 | ||||||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
|
||||||||||||||||||||||||
| Sequence: |
CAGTTCCAGAGGTTGAAAAGAAAGCATCTGCAAACTGGTAAATACTTTGACCATTTCGGCTTGAhide sequence |
| RefSeq Acc Id: | XM_008760890 ⟹ XP_008759112 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
|||||||||
| Sequence: |
TTTTTTAAATACCCTTGAGAATTTTAGTATTTACGATTTCCCCCTCAGTCTTGTTTATTCTTGAhide sequence |
| RefSeq Acc Id: | XM_017590583 ⟹ XP_017446072 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
|||||||||
| Sequence: |
ATGCCTAAGAGTCAGAAACACAGACCTTCGGTTTTCCAGCAAAAGGCAAAAGTCAACCCACCTGhide sequence |
| RefSeq Acc Id: | XM_017590584 ⟹ XP_017446073 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
|||||||||
| Sequence: |
GGAACCACCACCAACACCTAGACAGCCACTGTGACGGCTTCCACGAGATCCAGGGAAAGCGACGhide sequence |
| RefSeq Acc Id: | XM_017590585 ⟹ XP_017446074 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
|||||||||
| Sequence: |
TCTGGATCCCCCGCGAGGAGCTACTAATAGATTATGCATTGTTGGGCAATAAACTCTCCCGGGAhide sequence |
| RefSeq Acc Id: | XM_017590586 ⟹ XP_017446075 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
|||||||||
| Sequence: |
TGCTTTTTAAAAATCGACTCTCCAGCAGCTAAGAATGTGGGCACAGTTTGAGAGGAGAGACTAAhide sequence |
| RefSeq Acc Id: | XM_017590587 ⟹ XP_017446076 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
|||||||||
| Sequence: |
ATGCCTAAGAGTCAGAAACACAGACCTTCGGTTTTCCAGCAAAAGGCAAAAGTCAACCCACCTGhide sequence |
| RefSeq Acc Id: | XM_017590588 ⟹ XP_017446077 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
|||||||||
| Sequence: |
TTATTTTCTCCAGTGGTGGATTTTCAGAAGCAAAGGAGCATCGGTCTGACATACAAATCTCCTAhide sequence |
| RefSeq Acc Id: | XM_017590589 ⟹ XP_017446078 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
|||||||||
| Sequence: |
TCTGGATCCCCCGCGAGGAGCTACTAATAGATTATGCATTGTTGGGCAATAAACTCTCCCGGGAhide sequence |
| RefSeq Acc Id: | XM_017590590 ⟹ XP_017446079 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
|||||||||
| Sequence: |
ATGCCTAAGAGTCAGAAACACAGACCTTCGGTTTTCCAGCAAAAGGCAAAAGTCAACCCACCTGhide sequence |
Protein Sequences| Protein RefSeqs | NP_446320 | (Get FASTA) | NCBI Sequence Viewer |
| XP_008759112 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017446072 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017446073 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017446074 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017446075 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017446076 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017446077 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017446078 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017446079 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAA85720 | (Get FASTA) | NCBI Sequence Viewer |
| EDM01096 | (Get FASTA) | NCBI Sequence Viewer | |
| Q62765 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_446320 ⟸ NM_053868 |
| - Peptide Label: | precursor |
| - UniProtKB: | Q62765 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGhide sequence |
| RefSeq Acc Id: | XP_008759112 ⟸ XM_008760890 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MVYIHGGSYMEGTGNLYDGSVLASYGNVIVITVNYRLGVLGFLSTGDQAAKGNYGLLDLIQALRhide sequence |
| RefSeq Acc Id: | XP_017446075 ⟸ XM_017590586 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q62765 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGhide sequence |
| RefSeq Acc Id: | XP_017446073 ⟸ XM_017590584 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q62765 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGhide sequence |
| RefSeq Acc Id: | XP_017446078 ⟸ XM_017590589 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q62765 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGhide sequence |
| RefSeq Acc Id: | XP_017446074 ⟸ XM_017590585 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q62765 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGhide sequence |
| RefSeq Acc Id: | XP_017446076 ⟸ XM_017590587 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q62765 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGhide sequence |
| RefSeq Acc Id: | XP_017446079 ⟸ XM_017590590 |
| - Peptide Label: | isoform X2 |
| - UniProtKB: | Q62765 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGhide sequence |
| RefSeq Acc Id: | XP_017446072 ⟸ XM_017590583 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q62765 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGhide sequence |
| RefSeq Acc Id: | XP_017446077 ⟸ XM_017590588 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q62765 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGhide sequence |
| RefSeq Acc Id: | ENSRNOP00000040172 ⟸ ENSRNOT00000041111 |
| RefSeq Acc Id: | ENSRNOP00000075793 ⟸ ENSRNOT00000092660 |
TranscriptomeStrain Sequence Variants (Rnor 6.0)
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:621117 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000032576 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000040172 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOP00000075793 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Ensembl Transcript | ENSRNOT00000041111 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOT00000092660 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Gene3D-CATH | 3.40.50.1820 | UniProtKB/Swiss-Prot |
| InterPro | AB_hydrolase | UniProtKB/Swiss-Prot |
| CarbesteraseB | UniProtKB/Swiss-Prot | |
| Carboxylesterase_B_CS | UniProtKB/Swiss-Prot | |
| Nlgn | UniProtKB/Swiss-Prot | |
| NLGN1 | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:116647 | UniProtKB/Swiss-Prot |
| NCBI Gene | 116647 | ENTREZGENE |
| PANTHER | PTHR43903:SF2 | UniProtKB/Swiss-Prot |
| Pfam | COesterase | UniProtKB/Swiss-Prot |
| PhenoGen | Nlgn1 | PhenoGen |
| PRINTS | NEUROLIGIN | UniProtKB/Swiss-Prot |
| PROSITE | CARBOXYLESTERASE_B_2 | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | SSF53474 | UniProtKB/Swiss-Prot |
| UniGene | Rn.10173 | ENTREZGENE |
| UniProt | A0A0H2UHW8_RAT | UniProtKB/TrEMBL |
| NLGN1_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2004-02-26 | Nlgn1 | neuroligin 1 | Symbol and Name status set to approved | 625702 | APPROVED | ||
| 2002-08-07 | Nlgn1 | neuroligin 1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_expression | expressed by second order mitral cells during early postnatal development in the olfactory bulb | 727397 |
 |
| More on Nlgn1 | |
|
Alliance Gene |
|
NCBI Gene |
|
Ensembl Gene |
|
|
JBrowse: rn5 rn6 |
|
NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 621117 |
| Created: | 2002-08-06 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
 |
 |
 |
 |
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
