Cdh18 (cadherin 18) - Rat Genome Database

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Gene: Cdh18 (cadherin 18) Rattus norvegicus
Analyze
Symbol: Cdh18
Name: cadherin 18
RGD ID: 1305430
Description: Predicted to have cadherin binding activity and calcium ion binding activity. Predicted to be involved in several processes, including calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to localize to adherens junction and catenin complex. Orthologous to human CDH18 (cadherin 18); INTERACTS WITH 17alpha-ethynylestradiol (ortholog); 17beta-estradiol (ortholog); 2,2',4,4',5,5'-hexachlorobiphenyl (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: cadherin 18, type 2; cadherin-18; LOC310174
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2272,818,076 - 73,820,144 (+)NCBI
Rnor_6.0 Ensembl274,360,622 - 74,693,341 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0273,651,408 - 74,693,342 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0294,092,755 - 94,420,560 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4274,531,500 - 74,727,208 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1274,391,226 - 74,712,229 (+)NCBI
Celera268,593,481 - 69,592,108 (+)NCBICelera
Cytogenetic Map2q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Cdh18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2272,818,076 - 73,820,144 (+)NCBI
Rnor_6.0 Ensembl274,360,622 - 74,693,341 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0273,651,408 - 74,693,342 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0294,092,755 - 94,420,560 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4274,531,500 - 74,727,208 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1274,391,226 - 74,712,229 (+)NCBI
Celera268,593,481 - 69,592,108 (+)NCBICelera
Cytogenetic Map2q21NCBI
CDH18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl519,471,296 - 20,575,873 (-)EnsemblGRCh38hg38GRCh38
GRCh38519,471,296 - 20,575,886 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37519,471,405 - 20,575,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36519,508,898 - 20,017,046 (-)NCBINCBI36hg18NCBI36
Build 34519,508,913 - 20,017,046NCBI
Celera520,134,951 - 20,650,014 (-)NCBI
Cytogenetic Map5p14.3NCBI
HuRef519,366,653 - 19,882,067 (-)NCBIHuRef
CHM1_1519,472,997 - 20,575,859 (-)NCBICHM1_1
Cdh18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391522,548,984 - 23,477,577 (+)NCBIGRCm39mm39
GRCm39 Ensembl1522,549,108 - 23,474,504 (+)Ensembl
GRCm381522,548,898 - 23,477,491 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1522,549,022 - 23,474,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv371522,966,218 - 23,404,173 (+)NCBIGRCm37mm9NCBIm37
MGSCv361522,493,747 - 23,419,143 (+)NCBImm8
MGSCv361522,612,245 - 23,539,922 (+)NCBImm8
Celera1523,804,843 - 24,230,199 (+)NCBICelera
Cytogenetic Map15A2NCBI
Cdh18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554267,912,094 - 8,176,659 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554267,914,692 - 8,318,339 (-)NCBIChiLan1.0ChiLan1.0
CDH18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1595,432,743 - 96,533,064 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl596,163,304 - 96,531,116 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0589,870,613 - 90,970,909 (+)NCBIMhudiblu_PPA_v0panPan3
CDH18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1483,915,145 - 84,873,581 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl484,417,872 - 84,870,827 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha483,556,973 - 84,421,117 (+)NCBI
ROS_Cfam_1.0484,540,567 - 85,505,464 (+)NCBI
UMICH_Zoey_3.1484,059,834 - 85,022,511 (+)NCBI
UNSW_CanFamBas_1.0484,313,153 - 85,268,917 (+)NCBI
UU_Cfam_GSD_1.0485,092,626 - 86,117,931 (+)NCBI
Cdh18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213212,509,277 - 213,072,533 (-)NCBI
SpeTri2.0NW_00493648021,444,839 - 21,897,520 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl167,975,236 - 8,578,171 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1168,090,253 - 9,117,046 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2168,744,658 - 9,051,039 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDH18
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1418,981,462 - 19,337,792 (-)NCBI
ChlSab1.1 Ensembl418,983,427 - 19,337,822 (-)Ensembl

Position Markers
D2Mco41  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0274,684,924 - 74,685,139NCBIRnor6.0
Rnor_5.0294,412,142 - 94,412,357UniSTSRnor5.0
RGSC_v3.4274,777,266 - 74,777,482RGDRGSC3.4
RGSC_v3.4274,777,267 - 74,777,482UniSTSRGSC3.4
RGSC_v3.1274,705,499 - 74,705,715RGD
Celera269,583,700 - 69,583,915UniSTS
Cytogenetic Map2q22UniSTS
D2Rat207  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0273,900,144 - 73,900,284NCBIRnor6.0
Rnor_5.0293,636,448 - 93,636,588UniSTSRnor5.0
RGSC_v3.4274,009,207 - 74,009,347UniSTSRGSC3.4
RGSC_v3.4274,009,003 - 74,009,347RGDRGSC3.4
RGSC_v3.1273,937,440 - 73,937,580RGD
Celera268,826,990 - 68,827,126UniSTS
RH 3.4 Map2439.7RGD
RH 3.4 Map2439.7UniSTS
RH 2.0 Map2391.2RGD
SHRSP x BN Map230.9398RGD
Cytogenetic Map2q22UniSTS
D2Rat322  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0274,089,230 - 74,089,466NCBIRnor6.0
Rnor_5.0293,825,189 - 93,825,425UniSTSRnor5.0
RGSC_v3.4274,203,526 - 74,203,763RGDRGSC3.4
RGSC_v3.4274,203,527 - 74,203,763UniSTSRGSC3.4
RGSC_v3.1274,131,465 - 74,132,067RGD
Celera269,018,259 - 69,018,495UniSTS
SHRSP x BN Map229.1898UniSTS
SHRSP x BN Map229.1898RGD
Cytogenetic Map2q22UniSTS
D2Rat323  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0274,416,981 - 74,417,195NCBIRnor6.0
Rnor_5.0294,149,116 - 94,149,330UniSTSRnor5.0
RGSC_v3.4274,519,322 - 74,519,537RGDRGSC3.4
RGSC_v3.4274,519,323 - 74,519,537UniSTSRGSC3.4
RGSC_v3.1274,447,555 - 74,447,770RGD
Celera269,329,809 - 69,330,023UniSTS
SHRSP x BN Map229.7798UniSTS
SHRSP x BN Map229.7798RGD
Cytogenetic Map2q22UniSTS
D2Chm299  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0274,611,196 - 74,611,437NCBIRnor6.0
Rnor_5.0294,342,339 - 94,342,580UniSTSRnor5.0
RGSC_v3.4274,709,519 - 74,709,760UniSTSRGSC3.4
Celera269,516,560 - 69,516,804UniSTS
Cytogenetic Map2q22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)23127638105149020Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)216679272245624402Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22328064775687607Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)223837491149614623Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491169852800Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491169852800Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491218957222Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491218957222Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)223837719169852670Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)223837719169852670Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22618609783819822Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22618609783819822Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22618609783819822Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226186097135654963Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226186097142053534Rat
12879841Cm87Cardiac mass QTL 870.026heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)227161361148295267Rat
12879842Cm88Cardiac mass QTL 880.042heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)227161361148295267Rat
12879843Am3Aortic mass QTL 30.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)227161361148295267Rat
12879844Kidm62Kidney mass QTL 620.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227161361148295267Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23127237976272379Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23408817591101903Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23513320280133202Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)236245223112175725Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240171834105089682Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240171834105089682Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240171834105089682Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240171834105089682Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240171834105089682Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242776916169852800Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242776916195645082Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242776916217498710Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242776916217498710Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243133606217498545Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243133606217498545Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243141290114164944Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)243141290114164944Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243141290154583160Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight as a percentage of body weight (CMO:0000654)24314978885642672Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243149788198704485Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246537589217498710Rat
1354592Rf50Renal function QTL 503.5urine output (VT:0003620)timed urine volume (CMO:0000260)25443669875687607Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256244671217498710Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)25771560378466260Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25834410075687607Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)260131410135646395Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)260325352106432915Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)260325352106432915Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)260325352147522851Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)260325686105059293Rat
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)261924251106924251Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266828049217498710Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266828236243550655Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)26886541480632096Rat
1581576Pur7Proteinuria QTL 70.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)26886541480632096Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)268865414169852800Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)26886645480631953Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)268866454149614466Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)270132175115132175Rat
2317041Aia14Adjuvant induced arthritis QTL 143.29joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)271495404116495404Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:41
Interacting mature miRNAs:43
Transcripts:ENSRNOT00000014013
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 38
Low 2 8 5 5 26 12 26
Below cutoff 17 44 36 11 36 5 5 10 13 15 7 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ078292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000014013   ⟹   ENSRNOP00000014013
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl274,360,622 - 74,693,341 (+)Ensembl
RefSeq Acc Id: NM_001107656   ⟹   NP_001101126
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2273,345,005 - 73,820,144 (+)NCBI
RefSeq Acc Id: XM_008760819   ⟹   XP_008759041
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0274,188,004 - 74,693,342 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008775091   ⟹   XP_008773313
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera269,116,440 - 69,592,108 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591198   ⟹   XP_017446687
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2272,818,242 - 73,820,144 (+)NCBI
Rnor_6.0273,651,503 - 74,693,342 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591200   ⟹   XP_017446689
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2273,066,572 - 73,820,144 (+)NCBI
Rnor_6.0273,912,004 - 74,693,342 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591201   ⟹   XP_017446690
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2272,818,242 - 73,820,144 (+)NCBI
Rnor_6.0273,651,503 - 74,693,342 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591202   ⟹   XP_017446691
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2272,818,076 - 73,820,144 (+)NCBI
Rnor_6.0273,651,408 - 74,693,342 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591203   ⟹   XP_017446692
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0274,188,004 - 74,691,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591204   ⟹   XP_017446693
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0274,188,004 - 74,691,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595023   ⟹   XP_017450512
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera268,593,579 - 69,592,108 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595025   ⟹   XP_017450514
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera268,838,100 - 69,592,108 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595026   ⟹   XP_017450515
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera268,593,579 - 69,592,108 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595027   ⟹   XP_017450516
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera268,593,481 - 69,592,108 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595028   ⟹   XP_017450517
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera269,116,440 - 69,589,768 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595029   ⟹   XP_017450518
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera269,116,440 - 69,590,150 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039102209   ⟹   XP_038958137
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2273,083,871 - 73,820,144 (+)NCBI
RefSeq Acc Id: XM_039102210   ⟹   XP_038958138
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2273,083,871 - 73,820,144 (+)NCBI
RefSeq Acc Id: XM_039102211   ⟹   XP_038958139
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2272,818,244 - 73,817,855 (+)NCBI
RefSeq Acc Id: XM_039102212   ⟹   XP_038958140
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2272,818,244 - 73,818,189 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_008773313   ⟸   XM_008775091
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008759041   ⟸   XM_008760819
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450516   ⟸   XM_017595027
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450512   ⟸   XM_017595023
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450515   ⟸   XM_017595026
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450514   ⟸   XM_017595025
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450518   ⟸   XM_017595029
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017450517   ⟸   XM_017595028
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017446691   ⟸   XM_017591202
- Peptide Label: isoform X1
- UniProtKB: F1M702 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446687   ⟸   XM_017591198
- Peptide Label: isoform X1
- UniProtKB: F1M702 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446690   ⟸   XM_017591201
- Peptide Label: isoform X1
- UniProtKB: F1M702 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446689   ⟸   XM_017591200
- Peptide Label: isoform X1
- UniProtKB: F1M702 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446693   ⟸   XM_017591204
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017446692   ⟸   XM_017591203
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000014013   ⟸   ENSRNOT00000014013
RefSeq Acc Id: XP_038958140   ⟸   XM_039102212
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958139   ⟸   XM_039102211
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958137   ⟸   XM_039102209
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958138   ⟸   XM_039102210
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001101126   ⟸   NM_001107656
- Peptide Label: precursor
Protein Domains
Cadherin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305430 AgrOrtholog
Ensembl Genes ENSRNOG00000010535 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014013 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014013 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Catenin_binding_dom UniProtKB/TrEMBL
KEGG Report rno:310174 UniProtKB/TrEMBL
NCBI Gene 310174 ENTREZGENE
PANTHER PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PhenoGen Cdh18 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin UniProtKB/TrEMBL
UniProt F1M702 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-20 Cdh18  cadherin 18  Cdh18  cadherin 18, type 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cdh18  cadherin 18, type 2   Cdh18_predicted  cadherin 18, type 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cdh18_predicted  cadherin 18, type 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED