D2Rat10 Marker Search Result - Rat Genome Database

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Marker: D2Rat10

Symbol: D2Rat10
Previously known as: oxsts6794; R035-B06; R0035-B06; 
RGD ID: 36428
Expected Size: 193 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8237,756,937 - 37,757,130 (+)Marker Load Pipeline
mRatBN7.2236,023,184 - 36,023,379 (+)MAPPERmRatBN7.2
Rnor_6.0234,967,269 - 34,967,461NCBIRnor6.0
Rnor_5.0254,092,967 - 54,093,159UniSTSRnor5.0
RGSC_v3.4235,874,554 - 35,874,746UniSTSRGSC3.4
RGSC_v3.4235,874,553 - 35,874,746RGDRGSC3.4
RGSC_v3.1235,794,923 - 35,795,115RGD
Celera231,979,553 - 31,979,726UniSTS
RH 3.4 Map2148.7RGD
RH 3.4 Map2148.7UniSTS
RH 2.0 Map2219.6RGD
SHRSP x BN Map215.0498RGD
FHH x ACI Map223.0699RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   WAG/RijKyo   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   SHR.WKY-(D2Rat10-D2Mgh13)   COP/OlaHsd   ACI.BN-(D2Rat10-D2Rat202)/Shul  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer CGTGGCACACCTACCACTAC
Reverse Primer CATCCCAGGCCTCTTTTAAA
 
Template 
GCAGGTCGACTCTAGAGGATCCCCACCGTGGCACACCTACCACTACCTTATCATATAGATACCC
AGATACATCAACACACACCACATCACACATTCACACACACACACACACACACACACACACACAC
ACACACACTCACTCACTCAATCAATCAACCAACCAGTCAATCAACAATGTCATTTTAAAAGAGG
CCTGGGATGTAAGTCAATGGTGGCATGTTTGCCTAACACAATGTAGTGCTCTAAGTTCAGTCCC
CAAGTGCCACTAAAGACACCAACAGATCATCAAATCATTGGTTTTGACACTGCTTTGTGGTCCC
ACCTGAGGCTCCCCTGGCAGAAGCTCTGACAGGGAGTGGGTACCGAGCTCGAATTCGTAATCAT
GGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGG
AAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGANTGAGCTAACTCACATTANTTGNGTTGCGC
TCACTGCCCGGCTTTCCAGTNGGGANACTGNCGNNNNNGNTGCGTTTGGGCNCAGNGTNGNTTT
TCTTNTCACCNGTGAGACGNNCNACNG
Strain, Expected Size(s)

AVN/Orl 177 BBDP/Rhw 171 BBDR/Rhw 173
BC/CpbU 189 BDIX/Han 191 BDVII/Cub 189
BN-Lx/Cub 171 BN/SsNHsd 191 BP/Cub 171
BUF/Pit 191 COP/OlaHsd 187 DA/PitN 191
DON/Melb 171 F344/Pit 171 FHH/Eur 173
GH/Omr 191 IS/Kyo 189 LE/Mol 171
LEW/Pit 177 LH/Mav 175 LN/Mav 171
LOU/CHan 173 M520/N 179 MHS/Gib 171
MNR/N 171 MNS/Gib 171 MR/Pit 171
NEDH/K 167 ODU/N 189 OKA/Wsl 189
OM/Ztm 171 P5C 171 PVG/Pit 171
SD/Rij 171 SHR/OlaHsd 189 SR/Jr 171
SS/Jr 171 WAG/RijKyo 173 WF/Pit 177
WIST/Nhg 177 WKY/OlaHsd 173 WN/N 171
WTC/Kyo 173


GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat

1 to 10 of 38 rows