Snora24 (small nucleolar RNA, H/ACA box 24) - Rat Genome Database

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Gene: Snora24 (small nucleolar RNA, H/ACA box 24) Rattus norvegicus
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Symbol: Snora24
Name: small nucleolar RNA, H/ACA box 24
RGD ID: 40962896
Description: Orthologous to human SNORA24 (small nucleolar RNA, H/ACA box 24); INTERACTS WITH 2-hydroxypropanoic acid (ortholog); aflatoxin B1 (ortholog); bisphenol A (ortholog).
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07009034.1; LOC120101243; small nucleolar RNA SNORA24
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,576,664 - 113,576,793 (-)NCBIGRCr8
mRatBN7.2282,490,770 - 82,490,892 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl282,490,770 - 82,490,892 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl282,490,770 - 82,490,892 (+)NCBImRatBN7.2 Ensembl
Rnor_6.0 Ensembl284,566,293 - 84,566,415 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snora24Rat2-hydroxypropanoic acid decreases expressionISOSNORA24 (Homo sapiens)6480464Lactic Acid results in decreased expression of SNORA24 mRNACTDPMID:30851411
Snora24Rataflatoxin B1 decreases methylationISOSNORA24 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of SNORA24 geneCTDPMID:27153756
Snora24Ratbisphenol A affects expressionISOSNORA24 (Homo sapiens)6480464bisphenol A affects the expression of SNORA24 mRNACTDPMID:30903817
Snora24Ratchlordecone increases expressionISOSnora24 (Mus musculus)6480464Chlordecone results in increased expression of SNORA24 mRNACTDPMID:29980752
Snora24Ratcisplatin increases expressionISOSNORA24 (Homo sapiens)6480464Cisplatin results in increased expression of SNORA24 mRNACTDPMID:27392435
Snora24Ratcoumestrol multiple interactionsISOSNORA24 (Homo sapiens)6480464[Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in decreased expression of SNORA24 mRNACTDPMID:19167446
Snora24RatEnterolactone multiple interactionsISOSNORA24 (Homo sapiens)6480464[Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in decreased expression of SNORA24 mRNACTDPMID:19167446
Snora24Ratnickel sulfate decreases expressionISOSNORA24 (Homo sapiens)6480464nickel sulfate results in decreased expression of SNORA24 mRNACTDPMID:22714537
Snora24Ratpirinixic acid decreases expressionISOSnora24 (Mus musculus)6480464pirinixic acid results in decreased expression of SNORA24 mRNACTDPMID:23811191
Snora24Ratrac-lactic acid decreases expressionISOSNORA24 (Homo sapiens)6480464Lactic Acid results in decreased expression of SNORA24 mRNACTDPMID:30851411
Snora24Rattemozolomide increases expressionISOSNORA24 (Homo sapiens)6480464Temozolomide results in increased expression of SNORA24 mRNACTDPMID:31758290
Snora24Rattitanium dioxide decreases methylationISOSnora24 (Mus musculus)6480464titanium dioxide results in decreased methylation of SNORA24 promoterCTDPMID:35295148

1 to 12 of 12 rows


Snora24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,576,664 - 113,576,793 (-)NCBIGRCr8
mRatBN7.2282,490,770 - 82,490,892 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl282,490,770 - 82,490,892 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl282,490,770 - 82,490,892 (+)NCBImRatBN7.2 Ensembl
Rnor_6.0 Ensembl284,566,293 - 84,566,415 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q23NCBI
SNORA24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384118,279,190 - 118,279,320 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4118,279,190 - 118,279,320 (+)EnsemblGRCh38hg38GRCh38
GRCh374119,200,345 - 119,200,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364119,419,793 - 119,419,923 (+)NCBINCBI36Build 36hg18NCBI36
Celera4116,491,469 - 116,491,599 (+)NCBICelera
Cytogenetic Map4q26NCBI
HuRef4114,935,771 - 114,935,901 (+)NCBIHuRef
CHM1_14119,176,583 - 119,176,713 (+)NCBICHM1_1
T2T-CHM13v2.04121,584,166 - 121,584,296 (+)NCBIT2T-CHM13v2.0
Snora24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393123,301,586 - 123,301,715 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3123,301,586 - 123,301,715 (-)EnsemblGRCm39 Ensembl
GRCm383123,507,937 - 123,508,066 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3123,507,937 - 123,508,066 (-)EnsemblGRCm38mm10GRCm38
MGSCv373123,210,855 - 123,210,984 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera3129,937,163 - 129,937,292 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map354.58NCBI
LOC119867267
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha324,565,881 - 4,566,011 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03237,729,071 - 37,729,201 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13237,752,210 - 37,752,340 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03237,475,257 - 37,475,387 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0322,328,349 - 2,328,479 (-)NCBIUU_Cfam_GSD_1.0

.

1 to 10 of 57 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat

1 to 10 of 57 rows





RefSeq Transcripts XR_005487665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000081921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl282,490,770 - 82,490,892 (+)Ensembl
RefSeq Acc Id: XR_005487665
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87113,576,664 - 113,576,793 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-53862 BioCyc
Ensembl Genes ENSRNOG00000061349 Ensembl
NCBI Gene LOC120101243 ENTREZGENE
PhenoGen Snora24 PhenoGen
RatGTEx ENSRNOG00000061349 RatGTEx
RNAcentral URS0000702CA8 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-17 Snora24  small nucleolar RNA, H/ACA box 24  LOC120101243  small nucleolar RNA SNORA24  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120101243  small nucleolar RNA SNORA24  AABR07009034.1    Data merged from RGD:15014016 737654 PROVISIONAL
2021-01-26 LOC120101243  small nucleolar RNA SNORA24      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07009034.1        Symbol and Name status set to provisional 45752 PROVISIONAL