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Gene: Trappc13 (trafficking protein particle complex subunit 13) Rattus norvegicus

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Symbol:

Trappc13

Name:

trafficking protein particle complex subunit 13

RGD ID:

1306583

Description:

Predicted to be part of TRAPPIII protein complex. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13); INTERACTS WITH bisphenol A; flutamide; nefazodone.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC294709; LOC294709; RGD1306583; similar to RIKEN cDNA 2410002O22 gene; trafficking protein particle complex 13; UPF0533 protein C5orf44 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	37,004,288 - 37,035,837 (-)	NCBI		GRCr8
mRatBN7.2	2	35,270,495 - 35,302,049 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	35,269,183 - 35,302,048 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	42,383,448 - 42,414,968 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	40,442,145 - 40,473,663 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	35,298,823 - 35,330,323 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	34,223,396 - 34,254,995 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	34,223,352 - 34,254,968 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	53,351,695 - 53,383,272 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	35,069,282 - 35,100,637 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	34,989,652 - 35,021,006 (-)	NCBI
Celera	2	31,246,997 - 31,278,522 (-)	NCBI		Celera
Cytogenetic Map	2	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

acrylamide (ISO)

aflatoxin M1 (ISO)

atrazine (ISO)

bisphenol A (EXP)

butanal (ISO)

carbon nanotube (ISO)

copper(II) sulfate (ISO)

corosolic acid (ISO)

dicrotophos (ISO)

ethanol (ISO)

flutamide (EXP)

formaldehyde (ISO)

hydrogen peroxide (ISO)

lead(0) (ISO)

leflunomide (ISO)

nefazodone (EXP)

paraquat (ISO)

perfluorohexanesulfonic acid (ISO)

potassium chromate (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

Triptolide (EXP)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

TRAPPIII protein complex (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Trappc13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	37,004,288 - 37,035,837 (-)	NCBI		GRCr8
mRatBN7.2	2	35,270,495 - 35,302,049 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	35,269,183 - 35,302,048 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	42,383,448 - 42,414,968 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	40,442,145 - 40,473,663 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	35,298,823 - 35,330,323 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	34,223,396 - 34,254,995 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	34,223,352 - 34,254,968 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	53,351,695 - 53,383,272 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	35,069,282 - 35,100,637 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	34,989,652 - 35,021,006 (-)	NCBI
Celera	2	31,246,997 - 31,278,522 (-)	NCBI		Celera
Cytogenetic Map	2	q13	NCBI

TRAPPC13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	65,625,027 - 65,666,233 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	65,624,789 - 65,666,233 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	64,920,854 - 64,962,060 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	64,956,314 - 64,997,710 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	61,919,011 - 61,960,412 (+)	NCBI		Celera
Cytogenetic Map	5	q12.3	NCBI
HuRef	5	61,876,616 - 61,917,964 (+)	NCBI		HuRef
CHM1_1	5	64,920,108 - 64,961,641 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	66,446,811 - 66,488,005 (+)	NCBI		T2T-CHM13v2.0

Trappc13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	104,278,661 - 104,314,974 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	104,278,657 - 104,314,977 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	104,142,153 - 104,178,466 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	104,142,149 - 104,178,469 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	104,932,233 - 104,968,546 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	105,263,699 - 105,298,805 (-)	NCBI		MGSCv36	mm8
Celera	13	108,533,441 - 108,571,243 (-)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	56.28	NCBI

Trappc13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	3,433,037 - 3,467,581 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955446	3,433,675 - 3,467,539 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRAPPC13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	48,257,331 - 48,297,155 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	46,410,958 - 46,450,782 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	48,340,894 - 48,382,296 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	49,995,314 - 50,036,464 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	49,995,314 - 50,036,451 (-)	Ensembl	panpan1.1		panPan2

TRAPPC13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	51,360,564 - 51,399,764 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	51,360,593 - 51,398,210 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	48,316,685 - 48,355,638 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	51,852,170 - 51,891,132 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	51,851,946 - 51,891,130 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	48,911,903 - 48,950,873 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	49,701,000 - 49,740,200 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	50,593,434 - 50,632,404 (+)	NCBI		UU_Cfam_GSD_1.0

Trappc13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	194,588,465 - 194,620,538 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	3,520,692 - 3,557,738 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	3,524,948 - 3,557,738 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRAPPC13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	44,156,163 - 44,184,662 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	44,146,574 - 44,186,346 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	47,495,876 - 47,533,931 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRAPPC13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	61,817,031 - 61,858,115 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	61,817,039 - 61,856,668 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	10,459,807 - 10,500,786 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trappc13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624815	4,212,413 - 4,246,849 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	567
Count of miRNA genes:	265
Interacting mature miRNAs:	321
Transcripts:	ENSRNOT00000016439
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	42977529	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1300160	Hrtrt3	Heart rate QTL 3	3.62		heart pumping trait (VT:2000009)	absolute change in heart rate (CMO:0000534)	2	35614083	53462005	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	44538110	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

RH128741

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,270,566 - 35,270,746 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,223,470 - 34,223,649	NCBI	Rnor6.0
Rnor_5.0	2	53,351,770 - 53,351,949	UniSTS	Rnor5.0
RGSC_v3.4	2	35,069,354 - 35,069,533	UniSTS	RGSC3.4
Celera	2	31,247,069 - 31,247,248	UniSTS
RH 3.4 Map	2	125.8	UniSTS
Cytogenetic Map	2	q13	UniSTS

RH137993

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,295,006 - 35,295,139 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,247,909 - 34,248,041	NCBI	Rnor6.0
Rnor_5.0	2	53,376,207 - 53,376,339	UniSTS	Rnor5.0
RGSC_v3.4	2	35,093,791 - 35,093,923	UniSTS	RGSC3.4
Celera	2	31,271,488 - 31,271,620	UniSTS
RH 3.4 Map	2	142.9	UniSTS
Cytogenetic Map	2	q13	UniSTS

RH141301

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,269,475 - 35,269,658 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,222,379 - 34,222,561	NCBI	Rnor6.0
Rnor_5.0	2	53,350,679 - 53,350,861	UniSTS	Rnor5.0
RGSC_v3.4	2	35,068,263 - 35,068,445	UniSTS	RGSC3.4
Celera	2	31,245,978 - 31,246,160	UniSTS
RH 3.4 Map	2	125.2	UniSTS
Cytogenetic Map	2	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO397574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY312499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016439 ⟹ ENSRNOP00000016439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	35,270,462 - 35,302,048 (-)	Ensembl
Rnor_6.0 Ensembl	2	34,223,352 - 34,254,968 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105092 ⟹ ENSRNOP00000092702

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	35,269,183 - 35,294,551 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105393 ⟹ ENSRNOP00000093885

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	35,269,183 - 35,302,032 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110804 ⟹ ENSRNOP00000077296

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	35,269,183 - 35,302,032 (-)	Ensembl

RefSeq Acc Id:

NM_001013908 ⟹ NP_001013930

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,004,288 - 37,035,837 (-)	NCBI
mRatBN7.2	2	35,270,495 - 35,302,049 (-)	NCBI
Rnor_6.0	2	34,223,398 - 34,254,949 (-)	NCBI
Rnor_5.0	2	53,351,695 - 53,383,272 (-)	NCBI
RGSC_v3.4	2	35,069,282 - 35,100,637 (-)	RGD
Celera	2	31,246,997 - 31,278,522 (-)	NCBI

Sequence:

show sequence

TTTTGGGAAGCCGCGTATTGTCAGCCCGAAGTGGATCGTTGAAGTCAGCCTGTGTGGAAAATAT
GTGTATTTCTGAACGAAGGAATGGCCTTGGTAAAAAGATTTCACTGGAGCCGTAAAGGACTTAA
TGAAAAGAGAATTTAAGTTCTCAGGAGCAGAAAGAAGTCGAGCGTGCGTTTGAAGGCCGATCTT
CCGGGACTTGTGCCTGGCACTTTTCCTTCCAGACCCAGTGAAACTTCAGCCTGTATAGGCTGAG
GTCAGAAGTGCCGGTCAAAATGGAAGTGAATCCCCCCAAACAGGAGCACCTGCTGGCGCTAAAA
GTGATGCGATTGACCAAACCTACTTTGTTCACCAATATTCCTGTAACTTGTGAAGAGAAGGACT
TACCTGGTGATCTCTTTAACCAGTTAATGAAAGATGATCCTTCAACTGTAAATGGTGCAGAGAT
TTTAATGTTGGGAGAAATGTTGACTTTACCCCAAAATTTCGGGAATATATTTCTGGGAGAGACC
TTTTCCAGTTACATCAGTGTTCACAACGACAGCAATCAAGTTGTAAAAGATATATTGGTGAAGG
CGGATCTCCAGACGAGTTCTCAGCGTTTAAACCTTTCAGCCTCCAATGCTGCTGTGGCTGAACT
TAAACCTGATTGTTGTATTGATGATGTCATACACCACGAAGTAAAGGAAATTGGGACGCACATC
TTGGTGTGTGCTGTGAGTTACACAACTCAGGGTGGAGAAAAAATGTACTTTAGAAAATTCTTCA
AATTTCAGGTTCTCAAACCATTGGATGTGAAAACCAAATTTTACAATGCAGAGAGTGACCTCAG
TTCTGTGACTGATGAAGTATTTCTTGAAGCCCAAATTCAGAATATAACAACCTCACCAATGTTT
ATGGAGAAAGTTTCCCTGGAGCCATCAATAATGTACAATGTAACAGAATTGAATTCAGTGAACC
AAGCTGGAGAATGCGTATCTACATTTGGGTCCAGAGGATATTTGCAGCCAATGGATACACGCCA
ATACTTGTACTGCCTAAAGCCCAAGAAAGAATTTGCAGAAAAAGCCGGCATCATTAAGGGAGTG
ACAGTAATCGGGAAACTGGATATAGTGTGGAAAACAAATCTGGGTGAAAGGGGCCGACTACAGA
CCAGCCAGCTTCAAAGGATGGCTCCAGGTTATGGAGATGTTAGGCTGTCTTTAGAGGCCATCCC
AGATACCGTAAACCTAGAAGAACCTTTCCACATTACCTGTAAAATCACAAACTGCAGCAGTGAG
AGGACGATGGACCTAGTGCTGGAGATGTGCAACACCACCTCTATCCACTGGTGTGGGATTTCGG
GAAGACAGCTGGGGAAGCTGCACCCCAGCTCCTCGCTCTGCCTGGCCCTGACTCTCCTGTCCTC
AGTACAGGGGCTCCAAAGCGTGTCTGGCTTAAGACTCACGGACACATTTTTAAAAAGAACATAT
GAATATGATGACATTGCACAAGTCTGCGTGGTCTCAGCTGCTGTGGAAGTGGAAGCCTGAAGAA
ATTTCCTAATGTCAAACTTGTTTAATCACAGAATGCTCTCCGTATTTTGTCAGCTTTGTGCAAC
GATCAGTAATGAAAATAAGTATATGTTATTTAAATTTGTTTCCTGTAAAACAGTTAAATATTAA
ATGTTTGTTGTAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001013930	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88172	(Get FASTA)	NCBI Sequence Viewer
	EDM10257	(Get FASTA)	NCBI Sequence Viewer
	EDM10258	(Get FASTA)	NCBI Sequence Viewer
	EDM10259	(Get FASTA)	NCBI Sequence Viewer
	EDM10260	(Get FASTA)	NCBI Sequence Viewer
	EDM10261	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016439.7
	ENSRNOP00000077296.1
	ENSRNOP00000092702.1
	ENSRNOP00000093885.1
	ENSRNOP00055037435
	ENSRNOP00060004334
	ENSRNOP00065029579
GenBank Protein	Q5M887	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013930 ⟸ NM_001013908

- UniProtKB:

Q5M887 (UniProtKB/Swiss-Prot), A6I5E9 (UniProtKB/TrEMBL), A0A8I6AXP4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEVNPPKQEHLLALKVMRLTKPTLFTNIPVTCEEKDLPGDLFNQLMKDDPSTVNGAEILMLGEM
LTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQRLNLSASNAAVAELKPDCCI
DDVIHHEVKEIGTHILVCAVSYTTQGGEKMYFRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEV
FLEAQIQNITTSPMFMEKVSLEPSIMYNVTELNSVNQAGECVSTFGSRGYLQPMDTRQYLYCLK
PKKEFAEKAGIIKGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLE
EPFHITCKITNCSSERTMDLVLEMCNTTSIHWCGISGRQLGKLHPSSSLCLALTLLSSVQGLQS
VSGLRLTDTFLKRTYEYDDIAQVCVVSAAVEVEA

hide sequence

Ensembl Acc Id:

ENSRNOP00000016439 ⟸ ENSRNOT00000016439

Ensembl Acc Id:

ENSRNOP00000093885 ⟸ ENSRNOT00000105393

Ensembl Acc Id:

ENSRNOP00000077296 ⟸ ENSRNOT00000110804

Ensembl Acc Id:

ENSRNOP00000092702 ⟸ ENSRNOT00000105092

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5M887-F1-model_v2	AlphaFold	Q5M887	1-418	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691121

Promoter ID:

EPDNEW_R1645

Type:

initiation region

Name:

Trappc13_1

Description:

trafficking protein particle complex 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	34,254,927 - 34,254,987	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306583	AgrOrtholog
BioCyc Gene	G2FUF-54556	BioCyc
Ensembl Genes	ENSRNOG00000012124	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055026344	UniProtKB/Swiss-Prot
	ENSRNOG00060003594	UniProtKB/Swiss-Prot
	ENSRNOG00065021534	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000016439.8	UniProtKB/TrEMBL
	ENSRNOT00000105092.1	UniProtKB/TrEMBL
	ENSRNOT00000105393.1	UniProtKB/TrEMBL
	ENSRNOT00000110804.1	UniProtKB/Swiss-Prot
	ENSRNOT00055045684	UniProtKB/Swiss-Prot
	ENSRNOT00060005913	UniProtKB/Swiss-Prot
	ENSRNOT00065036741	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7323103	IMAGE-MGC_LOAD
InterPro	TRAPPC13	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:294709	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:108800	IMAGE-MGC_LOAD
NCBI Gene	294709	ENTREZGENE
PANTHER	PTHR13134	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 13	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DUF974	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Trappc13	PhenoGen
RatGTEx	ENSRNOG00000012124	RatGTEx
	ENSRNOG00055026344	RatGTEx
	ENSRNOG00060003594	RatGTEx
	ENSRNOG00065021534	RatGTEx
UniProt	A0A8I6AE67_RAT	UniProtKB/TrEMBL
	A0A8I6AXP4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UIY5_RAT	UniProtKB/TrEMBL
	A6I5E9	ENTREZGENE, UniProtKB/TrEMBL
	Q5M887	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-02-18	Trappc13	trafficking protein particle complex subunit 13	Trappc13	trafficking protein particle complex 13	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-01-31	Trappc13	trafficking protein particle complex 13	RGD1306583	similar to RIKEN cDNA 2410002O22 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306583	similar to RIKEN cDNA 2410002O22 gene	RGD1306583_predicted	similar to RIKEN cDNA 2410002O22 gene (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306583_predicted	similar to RIKEN cDNA 2410002O22 gene (predicted)	LOC294709_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC294709_predicted	similar to RIKEN cDNA 2410002O22 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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