Mbnl1 (muscleblind-like splicing regulator 1) - Rat Genome Database

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Gene: Mbnl1 (muscleblind-like splicing regulator 1) Rattus norvegicus
Analyze
Symbol: Mbnl1
Name: muscleblind-like splicing regulator 1
RGD ID: 628668
Description: Enables regulatory region RNA binding activity. Predicted to be involved in RNA splicing; myoblast differentiation; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within several processes, including embryonic limb morphogenesis; mRNA splicing, via spliceosome; and skeletal muscle tissue development. Located in nucleus. Orthologous to human MBNL1 (muscleblind like splicing regulator 1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Mbnl; muscleblind-like; muscleblind-like (Drosophila); muscleblind-like 1; muscleblind-like 1 (Drosophila); muscleblind-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22144,639,819 - 144,814,395 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2144,670,285 - 144,814,368 (+)Ensembl
Rnor_6.02150,698,248 - 150,867,791 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2150,756,185 - 150,869,690 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02170,117,575 - 170,293,074 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42149,891,873 - 150,004,089 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12149,942,293 - 149,942,359 (+)NCBI
Celera2139,098,823 - 139,210,061 (+)NCBICelera
Cytogenetic Map2q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
hydrogen cyanide  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
kojic acid  (ISO)
leflunomide  (ISO)
levonorgestrel  (ISO)
maneb  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
testosterone  (EXP)
testosterone undecanoate  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
Triptolide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
cytoplasmic stress granule  (ISO)
cytosol  (IEA,ISO)
nucleoplasm  (IBA,ISO)
nucleus  (IDA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10970838   PMID:15257297   PMID:15830352   PMID:16717059   PMID:16946708   PMID:18335541   PMID:19075228   PMID:19720736   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Mbnl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22144,639,819 - 144,814,395 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2144,670,285 - 144,814,368 (+)Ensembl
Rnor_6.02150,698,248 - 150,867,791 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2150,756,185 - 150,869,690 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02170,117,575 - 170,293,074 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42149,891,873 - 150,004,089 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12149,942,293 - 149,942,359 (+)NCBI
Celera2139,098,823 - 139,210,061 (+)NCBICelera
Cytogenetic Map2q31NCBI
MBNL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3152,243,828 - 152,465,780 (+)EnsemblGRCh38hg38GRCh38
GRCh383152,243,632 - 152,465,780 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373151,961,421 - 152,183,569 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363153,468,519 - 153,666,259 (+)NCBINCBI36hg18NCBI36
Celera3150,403,912 - 150,601,668 (+)NCBI
Cytogenetic Map3q25.1-q25.2NCBI
HuRef3149,377,001 - 149,574,674 (+)NCBIHuRef
CHM1_13151,948,828 - 152,146,588 (+)NCBICHM1_1
Mbnl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39360,380,209 - 60,537,171 (+)NCBIGRCm39mm39
GRCm39 Ensembl360,380,251 - 60,537,171 (+)Ensembl
GRCm38360,472,559 - 60,629,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl360,472,830 - 60,629,750 (+)EnsemblGRCm38mm10GRCm38
MGSCv37360,305,174 - 60,433,670 (+)NCBIGRCm37mm9NCBIm37
MGSCv36360,589,181 - 60,717,677 (+)NCBImm8
Celera360,219,667 - 60,332,581 (+)NCBICelera
Cytogenetic Map3DNCBI
Mbnl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554483,864,843 - 4,065,122 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554483,864,862 - 4,065,122 (+)NCBIChiLan1.0ChiLan1.0
MBNL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13156,858,039 - 157,057,239 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3156,888,763 - 157,054,207 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03149,288,323 - 149,487,635 (+)NCBIMhudiblu_PPA_v0panPan3
MBNL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12346,697,755 - 46,941,300 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2346,737,790 - 46,938,233 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2346,601,940 - 46,804,866 (+)NCBI
ROS_Cfam_1.02347,365,203 - 47,568,448 (+)NCBI
UMICH_Zoey_3.12346,951,402 - 47,154,458 (+)NCBI
UNSW_CanFamBas_1.02347,007,248 - 47,210,007 (+)NCBI
UU_Cfam_GSD_1.02347,287,802 - 47,491,349 (+)NCBI
Mbnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560289,153,246 - 89,338,851 (-)NCBI
SpeTri2.0NW_004936519419,332 - 580,706 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MBNL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1392,491,808 - 92,696,233 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11392,491,778 - 92,696,235 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213100,593,105 - 100,741,224 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MBNL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11538,208,694 - 38,427,867 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1538,208,038 - 38,375,273 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604110,962,106 - 11,182,754 (-)NCBIVero_WHO_p1.0
Mbnl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473029,930,292 - 30,112,145 (+)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1581552Pur12Proteinuria QTL 125.190.0009total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1354594Despr10Despair related QTL 100.00000249locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2118111229149559726Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
12879841Cm87Cardiac mass QTL 870.026heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2142323368146786035Rat
12879842Cm88Cardiac mass QTL 880.042heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2142323368146786035Rat
12879843Am3Aortic mass QTL 30.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2142323368146786035Rat
12879844Kidm62Kidney mass QTL 620.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2142323368146786035Rat
7488933Bp368Blood pressure QTL 3680.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2142323368147803808Rat
1549828Bp258Blood pressure QTL 2580.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2142323368150650069Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:101
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000036808
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 57 41 19 41 8 10 66 35 36 11 8
Low 1 1 8 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY148302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000036808   ⟹   ENSRNOP00000033304
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2144,670,285 - 144,807,145 (+)Ensembl
Rnor_6.0 Ensembl2150,756,258 - 150,867,775 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088461   ⟹   ENSRNOP00000070159
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2144,670,285 - 144,813,227 (+)Ensembl
Rnor_6.0 Ensembl2150,756,185 - 150,869,690 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097984   ⟹   ENSRNOP00000094816
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2144,670,334 - 144,814,368 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102621   ⟹   ENSRNOP00000095306
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2144,670,285 - 144,813,227 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106022   ⟹   ENSRNOP00000081828
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2144,670,334 - 144,814,368 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111474   ⟹   ENSRNOP00000076663
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2144,670,285 - 144,814,286 (+)Ensembl
RefSeq Acc Id: NM_001191566   ⟹   NP_001178495
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,697,833 - 144,809,367 (+)NCBI
Rnor_6.02150,756,258 - 150,867,775 (+)NCBI
Rnor_5.02170,117,575 - 170,293,074 (+)NCBI
Celera2139,098,823 - 139,210,061 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761039   ⟹   XP_008759261
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,802,410 (+)NCBI
Rnor_6.02150,728,779 - 150,859,225 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039101825   ⟹   XP_038957753
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101826   ⟹   XP_038957754
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,639,819 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_039101827   ⟹   XP_038957755
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,639,825 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_039101828   ⟹   XP_038957756
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,695,633 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_039101829   ⟹   XP_038957757
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,914 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_039101830   ⟹   XP_038957758
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101831   ⟹   XP_038957759
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101832   ⟹   XP_038957760
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101833   ⟹   XP_038957761
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101834   ⟹   XP_038957762
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101835   ⟹   XP_038957763
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101836   ⟹   XP_038957764
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101837   ⟹   XP_038957765
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101838   ⟹   XP_038957766
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101839   ⟹   XP_038957767
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101840   ⟹   XP_038957768
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,285 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101841   ⟹   XP_038957769
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101842   ⟹   XP_038957770
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,806,488 (+)NCBI
RefSeq Acc Id: XM_039101843   ⟹   XP_038957771
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101844   ⟹   XP_038957772
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101845   ⟹   XP_038957773
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101846   ⟹   XP_038957774
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101847   ⟹   XP_038957775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101848   ⟹   XP_038957776
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101849   ⟹   XP_038957777
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101850   ⟹   XP_038957778
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,316 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101851   ⟹   XP_038957779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,639,819 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_039101852   ⟹   XP_038957780
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,639,825 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_039101853   ⟹   XP_038957781
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,697,884 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_039101854   ⟹   XP_038957782
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101855   ⟹   XP_038957783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,806,488 (+)NCBI
RefSeq Acc Id: XM_039101856   ⟹   XP_038957784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101857   ⟹   XP_038957785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101859   ⟹   XP_038957787
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101860   ⟹   XP_038957788
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,305 - 144,802,410 (+)NCBI
RefSeq Acc Id: XM_039101861   ⟹   XP_038957789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,316 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101862   ⟹   XP_038957790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22144,670,316 - 144,814,393 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001178495 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759261 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957753 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957754 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957755 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957756 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957757 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957758 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957759 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957760 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957761 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957762 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957763 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957764 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957765 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957766 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957767 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957768 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957769 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957770 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957771 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957772 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957773 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957774 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957775 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957776 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957777 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957778 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957779 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957780 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957781 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957782 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957783 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957784 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957785 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957787 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957788 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957789 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957790 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAN72327 (Get FASTA)   NCBI Sequence Viewer  
  EDM14832 (Get FASTA)   NCBI Sequence Viewer  
  EDM14833 (Get FASTA)   NCBI Sequence Viewer  
  EDM14834 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001178495   ⟸   NM_001191566
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759261   ⟸   XM_008761039
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: ENSRNOP00000033304   ⟸   ENSRNOT00000036808
RefSeq Acc Id: ENSRNOP00000070159   ⟸   ENSRNOT00000088461
RefSeq Acc Id: XP_038957754   ⟸   XM_039101826
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957779   ⟸   XM_039101851
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038957755   ⟸   XM_039101827
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957780   ⟸   XM_039101852
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038957768   ⟸   XM_039101840
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038957753   ⟸   XM_039101825
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957763   ⟸   XM_039101835
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038957758   ⟸   XM_039101830
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038957766   ⟸   XM_039101838
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038957761   ⟸   XM_039101833
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038957764   ⟸   XM_039101836
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038957775   ⟸   XM_039101847
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038957759   ⟸   XM_039101831
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038957769   ⟸   XM_039101841
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038957760   ⟸   XM_039101832
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038957773   ⟸   XM_039101845
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038957767   ⟸   XM_039101839
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038957782   ⟸   XM_039101854
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038957771   ⟸   XM_039101843
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038957785   ⟸   XM_039101857
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038957762   ⟸   XM_039101834
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038957774   ⟸   XM_039101846
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038957765   ⟸   XM_039101837
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038957776   ⟸   XM_039101848
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038957784   ⟸   XM_039101856
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038957772   ⟸   XM_039101844
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038957787   ⟸   XM_039101859
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038957777   ⟸   XM_039101849
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038957770   ⟸   XM_039101842
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038957783   ⟸   XM_039101855
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038957788   ⟸   XM_039101860
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038957778   ⟸   XM_039101850
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038957789   ⟸   XM_039101861
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038957790   ⟸   XM_039101862
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038957757   ⟸   XM_039101829
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957756   ⟸   XM_039101828
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957781   ⟸   XM_039101853
- Peptide Label: isoform X22
RefSeq Acc Id: ENSRNOP00000081828   ⟸   ENSRNOT00000106022
RefSeq Acc Id: ENSRNOP00000095306   ⟸   ENSRNOT00000102621
RefSeq Acc Id: ENSRNOP00000094816   ⟸   ENSRNOT00000097984
RefSeq Acc Id: ENSRNOP00000076663   ⟸   ENSRNOT00000111474
Protein Domains
C3H1-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691352
Promoter ID:EPDNEW_R1877
Type:single initiation site
Name:Mbnl1_1
Description:muscleblind-like splicing regulator 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02150,756,202 - 150,756,262EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
2 170266084 170266085 C G snv HTX/Kyo (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628668 AgrOrtholog
Ensembl Genes ENSRNOG00000014076 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000033304 UniProtKB/TrEMBL
  ENSRNOP00000070159 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036808 UniProtKB/TrEMBL
  ENSRNOT00000088461 UniProtKB/TrEMBL
InterPro Znf_CCCH UniProtKB/TrEMBL
KEGG Report rno:282635 UniProtKB/TrEMBL
NCBI Gene 282635 ENTREZGENE
Pfam zf-CCCH UniProtKB/TrEMBL
PhenoGen Mbnl1 PhenoGen
PROSITE ZF_C3H1 UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/TrEMBL
UniProt A0A0G2JX72_RAT UniProtKB/TrEMBL
  F1M9N4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-25 Mbnl1  muscleblind-like splicing regulator 1  Mbnl1  muscleblind-like 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Mbnl1  muscleblind-like 1 (Drosophila)  Mbnl  muscleblind-like (Drosophila)  Symbol and Name updated 1299863 APPROVED
2003-02-27 Mbnl  muscleblind-like (Drosophila)      Symbol and Name status set to provisional 70820 PROVISIONAL